Wall clock time and date at job start Fri Apr 10 2020 17:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 111.00443 * 2 1 4 4 C 1.38858 * 111.00005 * 236.04739 * 2 1 3 5 5 C 1.39585 * 120.56522 * 59.71929 * 4 2 1 6 6 C 1.38196 * 118.42821 * 179.78141 * 5 4 2 7 7 C 1.38839 * 119.47188 * 0.50077 * 6 5 4 8 8 N 1.31339 * 121.12332 * 359.74204 * 7 6 5 9 9 C 1.32893 * 121.71415 * 0.02562 * 8 7 6 10 10 C 1.47710 * 119.80320 * 180.02562 * 9 8 7 11 11 O 1.21575 * 120.00193 * 179.97438 * 10 9 8 12 12 N 1.34782 * 120.00387 * 359.97006 * 10 9 8 13 13 C 1.46494 * 120.00259 * 180.02562 * 12 10 9 14 14 C 1.50693 * 109.47227 * 179.97438 * 13 12 10 15 15 O 1.21292 * 120.00001 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00322 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00139 * 180.02562 * 16 14 13 18 18 H 1.07999 * 120.00379 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99691 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00582 * 359.97438 * 19 17 16 21 21 Si 1.86812 * 119.99835 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46922 * 59.99797 * 21 19 17 23 23 H 1.48501 * 109.47019 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.46902 * 299.99888 * 21 19 17 25 25 H 1.09002 * 109.47401 * 183.95136 * 1 2 3 26 26 H 1.09001 * 109.46874 * 63.95149 * 1 2 3 27 27 H 1.09004 * 109.46970 * 303.95282 * 1 2 3 28 28 H 1.09006 * 109.46770 * 56.04400 * 3 2 1 29 29 H 1.09001 * 109.47456 * 176.04615 * 3 2 1 30 30 H 1.09000 * 109.46814 * 296.04921 * 3 2 1 31 31 H 1.08006 * 120.78828 * 0.02562 * 5 4 2 32 32 H 1.07996 * 120.26725 * 180.22030 * 6 5 4 33 33 H 1.07996 * 119.43668 * 179.76330 * 7 6 5 34 34 H 0.97000 * 119.99642 * 0.02562 * 12 10 9 35 35 H 1.09003 * 109.47480 * 300.00576 * 13 12 10 36 36 H 1.09002 * 109.47082 * 59.99926 * 13 12 10 37 37 H 0.97001 * 119.99895 * 359.97438 * 16 14 13 38 38 H 0.96997 * 120.00058 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9666 -0.7240 -1.0753 5 6 1.6552 -0.3545 -2.3849 6 6 2.1781 -1.1035 -3.4218 7 6 2.9823 -2.1985 -3.1357 8 7 3.2590 -2.5321 -1.8959 9 6 2.7846 -1.8417 -0.8642 10 6 3.1231 -2.2541 0.5131 11 8 2.6915 -1.6248 1.4596 12 7 3.9104 -3.3282 0.7208 13 6 4.2457 -3.7376 2.0869 14 6 5.1308 -4.9564 2.0431 15 8 5.4505 -5.4358 0.9758 16 7 5.5679 -5.5134 3.1899 17 6 6.3736 -6.6220 3.1500 18 1 6.6576 -7.0493 2.1997 19 6 6.8238 -7.1964 4.3324 20 7 6.4779 -6.6769 5.4888 21 14 7.9209 -8.7074 4.2781 22 1 9.1675 -8.3876 3.5371 23 1 8.2603 -9.1227 5.6629 24 1 7.2067 -9.8133 3.5912 25 1 -0.3634 -1.0252 0.0708 26 1 -0.3633 0.4513 -0.9233 27 1 -0.3633 0.5740 0.8525 28 1 1.5899 1.9163 0.8525 29 1 3.0829 1.3431 0.0709 30 1 1.7045 1.8723 -0.9233 31 1 1.0238 0.4991 -2.5831 32 1 1.9593 -0.8419 -4.4465 33 1 3.3875 -2.7858 -3.9464 34 1 4.2551 -3.8301 -0.0343 35 1 4.7695 -2.9256 2.5913 36 1 3.3307 -3.9727 2.6306 37 1 5.3132 -5.1294 4.0435 38 1 6.7919 -7.0781 6.3142 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908174928.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:50 Heat of formation + Delta-G solvation = -36.206809 kcal Electronic energy + Delta-G solvation = -22648.054716 eV Core-core repulsion = 19104.362456 eV Total energy + Delta-G solvation = -3543.692260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 292.132 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.89956 -40.55033 -39.49688 -38.28731 -36.21390 -35.18297 -33.42910 -33.23036 -31.60723 -29.34996 -28.53706 -26.71864 -25.91594 -25.18326 -22.51340 -21.75778 -21.32697 -20.10974 -19.30191 -18.03297 -17.60907 -17.34723 -16.81793 -16.69228 -16.43876 -16.15978 -15.95832 -15.61122 -15.34299 -14.98336 -14.88036 -14.39613 -14.34182 -13.88481 -13.55487 -13.53199 -13.49078 -13.23658 -12.92389 -12.89117 -12.68250 -12.46623 -12.12756 -11.56166 -11.22542 -10.89070 -10.71960 -10.54493 -10.18522 -10.08848 -9.93277 -9.25093 -8.50248 -6.00714 -0.38421 0.13420 1.38563 1.42579 1.53961 1.79275 1.91999 2.01329 2.32419 2.77615 2.82728 3.11339 3.16501 3.25566 3.78407 3.84748 3.99846 4.12291 4.22880 4.34085 4.37947 4.43130 4.43405 4.52734 4.57888 4.58435 4.92976 4.95409 5.00142 5.06591 5.32376 5.39149 5.44510 5.92255 5.95595 6.24409 6.45778 6.52148 6.85059 7.03831 7.23037 7.44487 7.95494 8.66592 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029793 B = 0.003097 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.581706 B = 9039.061078 C = 9797.635707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.519 5.519 3 C 0.037 3.963 4 C 0.095 3.905 5 C -0.115 4.115 6 C -0.118 4.118 7 C 0.086 3.914 8 N -0.479 5.479 9 C 0.062 3.938 10 C 0.560 3.440 11 O -0.528 6.528 12 N -0.701 5.701 13 C 0.124 3.876 14 C 0.432 3.568 15 O -0.623 6.623 16 N -0.558 5.558 17 C -0.340 4.340 18 H 0.085 0.915 19 C -0.010 4.010 20 N -0.916 5.916 21 Si 0.998 3.002 22 H -0.270 1.270 23 H -0.270 1.270 24 H -0.270 1.270 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.169 0.831 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.414 0.586 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.399 0.601 38 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.077 16.099 -15.783 25.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.241 5.241 3 C -0.109 4.109 4 C -0.003 4.003 5 C -0.143 4.143 6 C -0.138 4.138 7 C -0.075 4.075 8 N -0.191 5.191 9 C -0.075 4.075 10 C 0.345 3.655 11 O -0.404 6.404 12 N -0.356 5.356 13 C -0.004 4.004 14 C 0.219 3.781 15 O -0.511 6.511 16 N -0.194 5.194 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.211 4.211 20 N -0.556 5.556 21 Si 0.821 3.179 22 H -0.195 1.195 23 H -0.195 1.195 24 H -0.195 1.195 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.186 0.814 32 H 0.202 0.798 33 H 0.208 0.792 34 H 0.253 0.747 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.233 0.767 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.445 15.238 -14.867 24.170 hybrid contribution -0.055 0.098 -0.311 0.330 sum -11.500 15.336 -15.177 24.450 Atomic orbital electron populations 1.22436 0.84163 1.02210 1.02280 1.59088 1.09575 1.15035 1.40392 1.22405 1.00119 0.86120 1.02213 1.19755 0.95504 0.93848 0.91210 1.22510 0.99433 1.00939 0.91429 1.22736 0.94936 0.93925 1.02180 1.23497 0.95203 0.95936 0.92867 1.67632 1.20961 1.29552 1.00965 1.21062 0.99248 0.94931 0.92298 1.18101 0.78714 0.80105 0.88551 1.90796 1.53017 1.53957 1.42581 1.45677 1.50717 1.30399 1.08835 1.20780 0.99239 0.95198 0.85185 1.20425 0.85647 0.87636 0.84421 1.90481 1.63465 1.66689 1.30481 1.41817 1.43786 1.26443 1.07319 1.19720 1.26799 1.05769 0.94593 0.89669 1.26142 0.99047 1.02034 0.93839 1.69677 1.45558 1.42276 0.98116 0.84920 0.78082 0.77176 0.77741 1.19467 1.19454 1.19484 0.92901 0.92899 0.89706 0.89690 0.93062 0.92987 0.81369 0.79773 0.79176 0.74735 0.88688 0.88708 0.76668 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.34 127.69 1.19 1.82 16 2 N -0.52 -12.41 2.91 -743.99 -2.17 -14.58 16 3 C 0.04 0.68 9.38 127.69 1.20 1.88 16 4 C 0.10 2.29 4.72 38.81 0.18 2.48 16 5 C -0.12 -1.73 8.68 22.59 0.20 -1.53 16 6 C -0.12 -1.42 10.10 22.40 0.23 -1.19 16 7 C 0.09 1.56 11.17 84.91 0.95 2.51 16 8 N -0.48 -13.58 9.53 -184.52 -1.76 -15.34 16 9 C 0.06 1.90 6.76 41.94 0.28 2.19 16 10 C 0.56 20.89 7.80 86.75 0.68 21.56 16 11 O -0.53 -21.27 15.01 -3.95 -0.06 -21.33 16 12 N -0.70 -27.65 5.52 -469.84 -2.59 -30.24 16 13 C 0.12 5.01 6.15 85.63 0.53 5.54 16 14 C 0.43 21.43 7.85 87.65 0.69 22.12 16 15 O -0.62 -34.74 15.24 -3.07 -0.05 -34.79 16 16 N -0.56 -29.36 5.29 -306.99 -1.62 -30.98 16 17 C -0.34 -19.38 9.68 84.04 0.81 -18.57 16 18 H 0.09 5.11 7.16 -2.91 -0.02 5.08 16 19 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 20 N -0.92 -49.81 13.05 21.66 0.28 -49.53 16 21 Si 1.00 42.77 29.55 68.60 2.03 44.79 16 22 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.05 0.63 7.16 -2.39 -0.02 0.62 16 27 H 0.08 1.35 8.12 -2.38 -0.02 1.33 16 28 H 0.08 1.38 8.12 -2.38 -0.02 1.36 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.05 0.65 7.41 -2.39 -0.02 0.63 16 31 H 0.17 1.40 7.16 -2.91 -0.02 1.38 16 32 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 33 H 0.19 2.22 8.06 -2.91 -0.02 2.19 16 34 H 0.41 17.10 6.76 -92.71 -0.63 16.47 16 35 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 36 H 0.09 3.63 8.14 -2.39 -0.02 3.61 16 37 H 0.40 20.08 7.90 -92.71 -0.73 19.35 16 38 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -74.20 331.35 1.22 -72.98 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.25 Total: 40.28 kcal Atomic # 6 Polarization: 31.34 SS G_CDS: 7.40 Total: 38.74 kcal Atomic # 7 Polarization: -132.81 SS G_CDS: -7.86 Total: -140.67 kcal Atomic # 8 Polarization: -56.01 SS G_CDS: -0.11 Total: -56.12 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -74.20 1.22 -72.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908174928.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.773 kcal (2) G-P(sol) polarization free energy of solvation -74.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds