Wall clock time and date at job start Fri Apr 10 2020 17:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46976 * 2 1 4 4 C 1.46496 * 119.99805 * 274.99717 * 3 2 1 5 5 C 1.50700 * 109.47461 * 274.84284 * 4 3 2 6 6 H 1.08000 * 119.99692 * 355.14335 * 5 4 3 7 7 C 1.37877 * 120.00141 * 175.14663 * 5 4 3 8 8 N 1.31512 * 120.00288 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47326 * 90.00089 * 9 7 5 11 11 H 1.48500 * 109.47318 * 210.00178 * 9 7 5 12 12 H 1.48509 * 109.47080 * 329.99927 * 9 7 5 13 13 S 1.65598 * 120.00096 * 94.99956 * 3 2 1 14 14 O 1.42101 * 106.40271 * 10.05801 * 13 3 2 15 15 O 1.42099 * 106.40361 * 142.97522 * 13 3 2 16 16 N 1.65600 * 107.21643 * 256.51694 * 13 3 2 17 17 C 1.46497 * 119.99989 * 69.11651 * 16 13 3 18 18 H 1.09006 * 110.80494 * 10.47630 * 17 16 13 19 19 C 1.54997 * 110.91071 * 246.85077 * 17 16 13 20 20 O 1.44381 * 103.49270 * 204.78066 * 19 17 16 21 21 C 1.43742 * 106.97438 * 40.05299 * 20 19 17 22 22 C 1.54100 * 107.29953 * 333.49245 * 21 20 19 23 23 H 1.09000 * 110.49071 * 120.70251 * 22 21 20 24 24 C 1.53004 * 110.48376 * 243.35379 * 22 21 20 25 25 H 1.08998 * 109.46974 * 60.00493 * 1 2 3 26 26 H 1.08999 * 109.46514 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47399 * 300.00079 * 1 2 3 28 28 H 1.08999 * 109.47399 * 239.99921 * 2 1 3 29 29 H 1.08998 * 109.46974 * 119.99507 * 2 1 3 30 30 H 1.09000 * 109.47451 * 34.84496 * 4 3 2 31 31 H 1.09006 * 109.47266 * 154.84465 * 4 3 2 32 32 H 0.96999 * 120.00205 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99825 * 249.11223 * 16 13 3 34 34 H 1.09003 * 110.61159 * 323.27762 * 19 17 16 35 35 H 1.09002 * 110.61854 * 86.27187 * 19 17 16 36 36 H 1.09003 * 109.87359 * 92.91367 * 21 20 19 37 37 H 1.09003 * 109.88006 * 214.05987 * 21 20 19 38 38 H 1.09003 * 109.46863 * 174.76650 * 24 22 21 39 39 H 1.09001 * 109.47026 * 294.75975 * 24 22 21 40 40 H 1.08994 * 109.47014 * 54.76553 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4964 1.7918 -1.8804 6 1 4.2063 1.1793 -1.3446 7 6 3.8143 2.2840 -3.1285 8 7 2.9496 3.0296 -3.7812 9 14 5.4727 1.8907 -3.8929 10 1 5.3679 0.6399 -4.6864 11 1 5.8857 3.0070 -4.7809 12 1 6.4830 1.7126 -2.8191 13 16 2.4121 2.1203 1.4287 14 8 2.3989 1.1049 2.4227 15 8 3.5479 2.9312 1.1612 16 7 1.1753 3.1562 1.8019 17 6 -0.1340 2.6247 2.1883 18 1 -0.0801 1.5496 2.3599 19 6 -1.2050 2.9612 1.1196 20 8 -2.4424 2.9365 1.8632 21 6 -2.1796 3.5515 3.1356 22 6 -0.6810 3.3575 3.4375 23 1 -0.1885 4.3222 3.5600 24 6 -0.4939 2.4964 4.6883 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3634 1.8076 -1.9463 31 1 2.0894 3.1802 -1.0760 32 1 3.1734 3.3762 -4.6591 33 1 1.3177 4.1150 1.7646 34 1 -1.0297 3.9514 0.6990 35 1 -1.2141 2.2055 0.3340 36 1 -2.4135 4.6151 3.0884 37 1 -2.7788 3.0721 3.9097 38 1 0.5670 2.2925 4.8336 39 1 -0.8840 3.0274 5.5567 40 1 -1.0312 1.5561 4.5657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921498550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:59 Heat of formation + Delta-G solvation = -127.719687 kcal Electronic energy + Delta-G solvation = -23390.962619 eV Core-core repulsion = 19946.453263 eV Total energy + Delta-G solvation = -3444.509356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.79335 -36.70440 -36.07196 -35.23565 -34.94417 -32.71042 -32.55565 -30.08498 -28.24940 -26.62266 -26.32192 -23.23745 -22.46187 -21.84926 -20.76102 -18.97315 -17.57151 -16.95799 -16.66415 -16.37314 -15.92710 -15.37891 -15.09183 -14.65475 -14.34661 -14.10326 -13.62005 -13.36195 -13.08495 -12.86075 -12.71357 -12.40923 -12.10352 -11.92539 -11.91419 -11.59608 -11.54518 -11.40711 -11.31747 -11.03327 -10.99052 -10.95847 -10.84172 -10.50843 -10.41327 -9.99989 -9.87743 -9.75933 -9.24366 -8.46980 -8.11805 -6.08396 -4.11822 1.16714 3.30715 3.35378 3.37261 3.44257 3.85852 4.12351 4.30720 4.43784 4.59782 4.72917 4.85896 5.04854 5.05492 5.27109 5.29078 5.35667 5.46542 5.50529 5.60889 5.66405 5.70019 5.72911 5.78523 5.81669 5.97548 6.05114 6.16614 6.29252 6.55932 6.61205 6.74068 7.06069 7.20742 7.40081 7.58133 7.89891 8.18710 8.91675 9.53567 10.99996 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.005246 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.227411 B = 5336.049893 C = 5620.132148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.259 3.741 5 C -0.525 4.525 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.272 1.272 13 S 2.778 3.222 14 O -0.997 6.997 15 O -0.963 6.963 16 N -1.120 6.120 17 C 0.125 3.875 18 H 0.111 0.889 19 C 0.028 3.972 20 O -0.375 6.375 21 C 0.050 3.950 22 C -0.136 4.136 23 H 0.090 0.910 24 C -0.145 4.145 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.263 0.737 33 H 0.414 0.586 34 H 0.070 0.930 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.258 -0.498 12.524 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.009 4.009 3 N -0.834 5.834 4 C 0.137 3.863 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.537 5.537 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.786 3.214 14 O -0.981 6.981 15 O -0.947 6.947 16 N -0.877 5.877 17 C 0.016 3.984 18 H 0.129 0.871 19 C -0.050 4.050 20 O -0.293 6.293 21 C -0.027 4.027 22 C -0.157 4.157 23 H 0.109 0.891 24 C -0.202 4.202 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.247 0.753 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.710 -0.821 12.805 16.091 hybrid contribution 0.800 0.565 -0.798 1.264 sum -8.909 -0.256 12.007 14.954 Atomic orbital electron populations 1.22439 0.97378 1.01908 1.01933 1.21152 0.93070 0.83122 1.03540 1.57730 1.81055 1.21424 1.23159 1.19003 0.97673 0.90468 0.79154 1.21507 1.00950 1.32169 1.01837 0.92074 1.24927 0.97320 0.94942 0.96879 1.69913 1.35181 1.34567 1.14018 0.86518 0.84118 0.77856 0.79105 1.20640 1.21134 1.19679 1.02056 0.73246 0.73055 0.73064 1.93522 1.87112 1.58649 1.58784 1.93655 1.46347 1.69601 1.85080 1.56197 1.25553 1.21082 1.84860 1.22375 0.83183 0.99385 0.93410 0.87108 1.24201 0.82789 1.02992 0.95053 1.88894 1.31683 1.81181 1.27503 1.23246 0.94792 0.98000 0.86658 1.22850 0.96210 1.00631 0.95970 0.89132 1.21832 1.02967 0.99475 0.95935 0.91769 0.91923 0.93157 0.89590 0.90540 0.94225 0.95339 0.92723 0.75308 0.91200 0.87575 0.92314 0.89589 0.91599 0.92287 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 9.38 37.16 0.35 -2.10 16 2 C 0.12 1.98 6.33 -4.04 -0.03 1.96 16 3 N -0.99 -19.57 2.82 -115.66 -0.33 -19.90 16 4 C 0.26 6.18 5.13 -5.20 -0.03 6.15 16 5 C -0.53 -14.41 9.38 -34.44 -0.32 -14.73 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 13 S 2.78 52.78 6.01 -107.50 -0.65 52.14 16 14 O -1.00 -19.54 15.83 -57.17 -0.90 -20.44 16 15 O -0.96 -22.41 17.63 -57.17 -1.01 -23.41 16 16 N -1.12 -16.09 5.58 -3.18 -0.02 -16.11 16 17 C 0.13 1.59 2.84 -65.92 -0.19 1.40 16 18 H 0.11 1.47 5.54 -51.93 -0.29 1.18 16 19 C 0.03 0.35 7.13 38.21 0.27 0.63 16 20 O -0.37 -4.76 11.52 -35.23 -0.41 -5.17 16 21 C 0.05 0.50 7.37 37.73 0.28 0.78 16 22 C -0.14 -1.40 3.39 -89.09 -0.30 -1.71 16 23 H 0.09 0.85 8.01 -51.93 -0.42 0.43 16 24 C -0.14 -1.39 8.92 37.16 0.33 -1.06 16 25 H 0.06 0.92 7.93 -51.93 -0.41 0.50 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.65 4.35 -51.93 -0.23 0.42 16 28 H 0.09 1.49 8.11 -51.93 -0.42 1.07 16 29 H 0.08 1.24 6.89 -51.93 -0.36 0.88 16 30 H 0.04 0.97 8.11 -51.93 -0.42 0.54 16 31 H 0.03 0.71 7.96 -51.93 -0.41 0.30 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.41 5.21 8.90 -34.47 -0.31 4.90 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.11 1.37 6.05 -51.93 -0.31 1.05 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.72 7.69 -51.93 -0.40 0.32 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 333.36 15.07 5.02 5.02 Total: -1.00 -32.64 333.36 -8.36 -40.99 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -6.06 Total: 2.22 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 0.27 Total: -7.08 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: 0.39 Total: -60.88 kcal Atomic # 8 Polarization: -46.71 SS G_CDS: -2.32 Total: -49.02 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 52.78 SS G_CDS: -0.65 Total: 52.14 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.64 -8.36 -40.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921498550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.725 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds