Wall clock time and date at job start Fri Apr 10 2020 17:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46976 * 2 1 4 4 C 1.46496 * 119.99805 * 274.99717 * 3 2 1 5 5 C 1.50700 * 109.47461 * 274.84284 * 4 3 2 6 6 H 1.08000 * 119.99692 * 355.14335 * 5 4 3 7 7 C 1.37877 * 120.00141 * 175.14663 * 5 4 3 8 8 N 1.31512 * 120.00288 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99948 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47326 * 90.00089 * 9 7 5 11 11 H 1.48500 * 109.47318 * 210.00178 * 9 7 5 12 12 H 1.48509 * 109.47080 * 329.99927 * 9 7 5 13 13 S 1.65598 * 120.00096 * 94.99956 * 3 2 1 14 14 O 1.42101 * 106.40271 * 10.05801 * 13 3 2 15 15 O 1.42099 * 106.40361 * 142.97522 * 13 3 2 16 16 N 1.65600 * 107.21643 * 256.51694 * 13 3 2 17 17 C 1.46497 * 119.99989 * 69.11651 * 16 13 3 18 18 H 1.09006 * 110.80494 * 10.47630 * 17 16 13 19 19 C 1.54997 * 110.91071 * 246.85077 * 17 16 13 20 20 O 1.44381 * 103.49270 * 204.78066 * 19 17 16 21 21 C 1.43742 * 106.97438 * 40.05299 * 20 19 17 22 22 C 1.54100 * 107.29953 * 333.49245 * 21 20 19 23 23 H 1.09000 * 110.49071 * 120.70251 * 22 21 20 24 24 C 1.53004 * 110.48376 * 243.35379 * 22 21 20 25 25 H 1.08998 * 109.46974 * 60.00493 * 1 2 3 26 26 H 1.08999 * 109.46514 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47399 * 300.00079 * 1 2 3 28 28 H 1.08999 * 109.47399 * 239.99921 * 2 1 3 29 29 H 1.08998 * 109.46974 * 119.99507 * 2 1 3 30 30 H 1.09000 * 109.47451 * 34.84496 * 4 3 2 31 31 H 1.09006 * 109.47266 * 154.84465 * 4 3 2 32 32 H 0.96999 * 120.00205 * 179.97438 * 8 7 5 33 33 H 0.97001 * 119.99825 * 249.11223 * 16 13 3 34 34 H 1.09003 * 110.61159 * 323.27762 * 19 17 16 35 35 H 1.09002 * 110.61854 * 86.27187 * 19 17 16 36 36 H 1.09003 * 109.87359 * 92.91367 * 21 20 19 37 37 H 1.09003 * 109.88006 * 214.05987 * 21 20 19 38 38 H 1.09003 * 109.46863 * 174.76650 * 24 22 21 39 39 H 1.09001 * 109.47026 * 294.75975 * 24 22 21 40 40 H 1.08994 * 109.47014 * 54.76553 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1086 -1.2639 5 6 3.4964 1.7918 -1.8804 6 1 4.2063 1.1793 -1.3446 7 6 3.8143 2.2840 -3.1285 8 7 2.9496 3.0296 -3.7812 9 14 5.4727 1.8907 -3.8929 10 1 5.3679 0.6399 -4.6864 11 1 5.8857 3.0070 -4.7809 12 1 6.4830 1.7126 -2.8191 13 16 2.4121 2.1203 1.4287 14 8 2.3989 1.1049 2.4227 15 8 3.5479 2.9312 1.1612 16 7 1.1753 3.1562 1.8019 17 6 -0.1340 2.6247 2.1883 18 1 -0.0801 1.5496 2.3599 19 6 -1.2050 2.9612 1.1196 20 8 -2.4424 2.9365 1.8632 21 6 -2.1796 3.5515 3.1356 22 6 -0.6810 3.3575 3.4375 23 1 -0.1885 4.3222 3.5600 24 6 -0.4939 2.4964 4.6883 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.3634 1.8076 -1.9463 31 1 2.0894 3.1802 -1.0760 32 1 3.1734 3.3762 -4.6591 33 1 1.3177 4.1150 1.7646 34 1 -1.0297 3.9514 0.6990 35 1 -1.2141 2.2055 0.3340 36 1 -2.4135 4.6151 3.0884 37 1 -2.7788 3.0721 3.9097 38 1 0.5670 2.2925 4.8336 39 1 -0.8840 3.0274 5.5567 40 1 -1.0312 1.5561 4.5657 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921498550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:58 Heat of formation + Delta-G solvation = -152.879301 kcal Electronic energy + Delta-G solvation = -23392.053622 eV Core-core repulsion = 19946.453263 eV Total energy + Delta-G solvation = -3445.600359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72637 -38.31612 -37.67760 -36.88795 -36.03477 -34.70700 -33.49061 -31.59918 -29.31332 -28.46830 -27.10698 -24.97168 -23.59131 -23.25209 -21.67335 -20.38858 -19.15532 -18.33298 -18.26017 -17.97407 -17.09625 -16.88446 -16.29538 -16.04319 -15.65267 -15.26025 -14.83600 -14.74509 -14.61343 -14.08959 -13.77434 -13.73825 -13.53355 -13.37506 -13.22192 -13.15570 -13.06795 -12.89084 -12.75929 -12.58777 -12.47139 -12.19528 -12.13737 -11.86258 -11.78854 -11.73842 -11.57218 -10.81526 -10.57893 -10.32959 -9.81041 -8.19197 -6.29656 -0.35109 1.39356 1.41457 1.52113 1.95025 2.40967 2.55164 3.02347 3.11910 3.37856 3.46886 3.71318 3.83913 3.96649 4.06106 4.18224 4.33755 4.45874 4.47409 4.51943 4.64545 4.74123 4.77897 4.84052 4.94158 5.01801 5.05555 5.13686 5.18583 5.19990 5.35289 5.41860 5.55734 5.71976 5.82127 5.89402 6.07728 6.15266 6.78815 7.38947 8.87825 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.023860 B = 0.005246 C = 0.004981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.227411 B = 5336.049893 C = 5620.132148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 N -0.996 5.996 4 C 0.276 3.724 5 C -0.545 4.545 6 H 0.049 0.951 7 C 0.015 3.985 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.277 1.277 13 S 2.794 3.206 14 O -1.003 7.003 15 O -1.010 7.010 16 N -1.105 6.105 17 C 0.117 3.883 18 H 0.107 0.893 19 C 0.030 3.970 20 O -0.389 6.389 21 C 0.048 3.952 22 C -0.132 4.132 23 H 0.102 0.898 24 C -0.145 4.145 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.032 0.968 31 H 0.015 0.985 32 H 0.267 0.733 33 H 0.424 0.576 34 H 0.071 0.929 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.049 0.951 39 H 0.082 0.918 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.255 -0.632 13.426 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.016 4.016 3 N -0.837 5.837 4 C 0.152 3.848 5 C -0.584 4.584 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.204 1.204 12 H -0.202 1.202 13 S 2.802 3.198 14 O -0.986 6.986 15 O -0.994 6.994 16 N -0.867 5.867 17 C 0.009 3.991 18 H 0.125 0.875 19 C -0.049 4.049 20 O -0.307 6.307 21 C -0.029 4.029 22 C -0.152 4.152 23 H 0.120 0.880 24 C -0.202 4.202 25 H 0.075 0.925 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.259 0.741 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.716 -0.973 13.717 17.434 hybrid contribution 1.045 0.602 -0.994 1.563 sum -9.671 -0.370 12.723 15.985 Atomic orbital electron populations 1.22370 0.94782 1.03679 1.02040 1.21366 0.95279 0.81538 1.03424 1.57619 1.81560 1.22585 1.21968 1.18558 0.95814 0.90020 0.80403 1.21837 1.02260 1.32055 1.02283 0.93305 1.25659 1.00508 0.94878 0.97417 1.69990 1.36648 1.35244 1.14402 0.85646 0.80084 0.78284 0.78233 1.19271 1.20414 1.20181 1.01354 0.73043 0.72743 0.72673 1.93508 1.87381 1.59124 1.58618 1.93589 1.49445 1.70668 1.85667 1.55737 1.25511 1.21059 1.84367 1.22582 0.81997 0.99527 0.94972 0.87536 1.24123 0.82908 1.02911 0.94924 1.88881 1.31516 1.81662 1.28667 1.23437 0.94490 0.99022 0.85920 1.22873 0.96540 1.00935 0.94887 0.87997 1.21852 1.02068 0.99833 0.96489 0.92466 0.89301 0.92250 0.90567 0.89794 0.94945 0.96685 0.92441 0.74081 0.91047 0.88182 0.90843 0.87777 0.93227 0.89939 0.91820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.47 9.38 71.98 0.68 -3.80 16 2 C 0.11 3.65 6.33 86.38 0.55 4.20 16 3 N -1.00 -39.64 2.82 -519.85 -1.47 -41.11 16 4 C 0.28 13.40 5.13 85.63 0.44 13.84 16 5 C -0.54 -30.38 9.38 25.60 0.24 -30.14 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.83 5.46 84.65 0.46 1.29 16 8 N -0.92 -52.95 13.29 21.45 0.28 -52.67 16 9 Si 0.95 44.38 29.54 68.60 2.03 46.41 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 S 2.79 106.40 6.01 -56.49 -0.34 106.06 16 14 O -1.00 -38.79 15.83 -128.00 -2.03 -40.81 16 15 O -1.01 -47.85 17.63 -128.00 -2.26 -50.11 16 16 N -1.11 -31.02 5.58 -163.99 -0.91 -31.93 16 17 C 0.12 2.80 2.84 46.29 0.13 2.94 16 18 H 0.11 2.66 5.54 -2.38 -0.01 2.65 16 19 C 0.03 0.71 7.13 72.67 0.52 1.23 16 20 O -0.39 -9.09 11.52 -148.98 -1.72 -10.80 16 21 C 0.05 0.81 7.37 72.35 0.53 1.34 16 22 C -0.13 -2.40 3.39 -9.80 -0.03 -2.44 16 23 H 0.10 1.64 8.01 -2.39 -0.02 1.62 16 24 C -0.15 -2.44 8.92 71.98 0.64 -1.80 16 25 H 0.06 1.59 7.93 -2.39 -0.02 1.57 16 26 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.06 1.44 4.35 -2.39 -0.01 1.43 16 28 H 0.08 2.66 8.11 -2.39 -0.02 2.64 16 29 H 0.08 2.66 6.89 -2.39 -0.02 2.64 16 30 H 0.03 1.61 8.11 -2.39 -0.02 1.59 16 31 H 0.02 0.77 7.96 -2.38 -0.02 0.75 16 32 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 33 H 0.42 10.36 8.90 -96.75 -0.86 9.50 16 34 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 2.49 6.05 -2.39 -0.01 2.48 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.10 1.39 7.69 -2.39 -0.02 1.38 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -69.36 333.36 -2.07 -71.43 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: 0.18 Total: 16.87 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 4.15 Total: -13.33 kcal Atomic # 7 Polarization: -123.61 SS G_CDS: -2.10 Total: -125.71 kcal Atomic # 8 Polarization: -95.73 SS G_CDS: -6.00 Total: -101.73 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 106.40 SS G_CDS: -0.34 Total: 106.06 kcal Total: -69.36 -2.07 -71.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921498550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.449 kcal (2) G-P(sol) polarization free energy of solvation -69.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds