Wall clock time and date at job start Fri Apr 10 2020 17:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46733 * 2 1 4 4 C 1.46495 * 120.00203 * 294.66378 * 3 2 1 5 5 C 1.50703 * 109.47242 * 275.00395 * 4 3 2 6 6 H 1.07997 * 120.00033 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99872 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99868 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99764 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47044 * 89.99704 * 9 7 5 11 11 H 1.48496 * 109.47293 * 209.99638 * 9 7 5 12 12 H 1.48499 * 109.47302 * 329.99668 * 9 7 5 13 13 S 1.65606 * 120.00020 * 114.66601 * 3 2 1 14 14 O 1.42098 * 106.40228 * 155.95389 * 13 3 2 15 15 O 1.42097 * 106.40010 * 23.03406 * 13 3 2 16 16 N 1.65592 * 107.21901 * 269.49260 * 13 3 2 17 17 C 1.46503 * 120.00160 * 63.60527 * 16 13 3 18 18 H 1.09002 * 110.45464 * 354.75771 * 17 16 13 19 19 C 1.54481 * 110.51658 * 232.00556 * 17 16 13 20 20 O 1.44421 * 104.80055 * 265.33572 * 19 17 16 21 21 C 1.44428 * 105.27628 * 319.48111 * 20 19 17 22 22 C 1.54480 * 104.80084 * 40.51633 * 21 20 19 23 23 H 1.09000 * 110.51105 * 217.37365 * 22 21 20 24 24 C 1.53004 * 110.51061 * 94.80227 * 22 21 20 25 25 H 1.08997 * 109.46731 * 186.45677 * 1 2 3 26 26 H 1.08997 * 109.47148 * 306.45665 * 1 2 3 27 27 H 1.08999 * 109.46827 * 66.45616 * 1 2 3 28 28 H 1.08994 * 109.47483 * 240.00436 * 2 1 3 29 29 H 1.09004 * 109.47002 * 119.99283 * 2 1 3 30 30 H 1.09007 * 109.47036 * 35.00309 * 4 3 2 31 31 H 1.09001 * 109.47348 * 155.00057 * 4 3 2 32 32 H 0.97001 * 119.99380 * 180.02562 * 8 7 5 33 33 H 0.97002 * 120.00766 * 243.60735 * 16 13 3 34 34 H 1.08990 * 110.37592 * 146.49657 * 19 17 16 35 35 H 1.09006 * 110.36550 * 24.16054 * 19 17 16 36 36 H 1.08994 * 110.37250 * 159.34804 * 21 20 19 37 37 H 1.09001 * 110.37048 * 281.68570 * 21 20 19 38 38 H 1.09003 * 109.46824 * 61.45221 * 24 22 21 39 39 H 1.08994 * 109.46647 * 181.45423 * 24 22 21 40 40 H 1.08996 * 109.46864 * 301.45427 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7633 2.2483 -1.1529 5 6 2.8284 2.0244 -2.1952 6 1 3.6168 1.3082 -2.0165 7 6 2.7971 2.7348 -3.3766 8 7 1.8374 3.6073 -3.5939 9 14 4.1178 2.4577 -4.6682 10 1 3.6864 1.3796 -5.5939 11 1 4.3317 3.7117 -5.4344 12 1 5.3852 2.0617 -4.0033 13 16 2.8586 1.9625 1.3033 14 8 3.6524 3.0381 0.8217 15 8 3.4039 0.8302 1.9665 16 7 1.7534 2.6260 2.3428 17 6 0.7352 1.7784 2.9682 18 1 0.7886 0.7641 2.5727 19 6 -0.6734 2.3740 2.7504 20 8 -0.9320 3.1538 3.9382 21 6 -0.4194 2.3622 5.0321 22 6 0.9061 1.7703 4.5038 23 1 1.0415 0.7519 4.8678 24 6 2.0884 2.6483 4.9192 25 1 -0.3633 -1.0211 0.1156 26 1 -0.3633 0.6106 0.8265 27 1 -0.3633 0.4105 -0.9421 28 1 1.8934 -0.5137 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 0.7863 2.0131 -1.5754 31 1 1.7800 3.2907 -0.8344 32 1 1.8152 4.1067 -4.4252 33 1 1.7801 3.5758 2.5377 34 1 -1.4109 1.5777 2.6512 35 1 -0.6826 3.0132 1.8675 36 1 -0.2337 2.9921 5.9020 37 1 -1.1181 1.5640 5.2828 38 1 2.1500 2.6838 6.0069 39 1 3.0107 2.2298 4.5164 40 1 1.9465 3.6565 4.5302 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921498552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:03 Heat of formation + Delta-G solvation = -123.466628 kcal Electronic energy + Delta-G solvation = -23451.117873 eV Core-core repulsion = 20006.792944 eV Total energy + Delta-G solvation = -3444.324930 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88247 -36.66575 -36.13143 -35.19882 -34.93099 -32.66401 -32.08508 -29.95910 -28.49668 -26.74670 -26.43669 -23.32026 -22.62608 -21.55680 -20.40018 -19.03060 -17.60590 -17.02607 -16.49767 -16.33477 -15.90457 -15.61394 -15.27960 -14.57389 -14.30188 -13.94603 -13.77934 -13.38434 -13.31197 -12.91775 -12.38500 -12.18698 -12.09187 -11.90568 -11.68549 -11.49390 -11.42172 -11.37483 -11.30391 -11.06492 -11.02903 -10.87012 -10.80005 -10.60095 -10.39514 -10.10104 -9.96112 -9.75970 -9.25556 -8.44196 -8.10246 -6.06495 -4.09988 1.19628 3.31361 3.38043 3.41981 3.45753 3.82872 4.11207 4.39223 4.45048 4.68540 4.74790 4.84972 5.01591 5.07058 5.24669 5.28594 5.35869 5.38087 5.51622 5.58994 5.65995 5.69135 5.71241 5.82631 5.89737 5.94559 6.05815 6.19244 6.30268 6.54333 6.61336 6.70413 7.09466 7.26622 7.41954 7.61160 7.91107 8.20840 8.92098 9.55098 11.02156 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.005215 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.605392 B = 5368.091905 C = 5597.966033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.258 3.742 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.777 3.223 14 O -0.963 6.963 15 O -0.997 6.997 16 N -1.121 6.121 17 C 0.128 3.872 18 H 0.102 0.898 19 C 0.033 3.967 20 O -0.371 6.371 21 C 0.047 3.953 22 C -0.138 4.138 23 H 0.090 0.910 24 C -0.136 4.136 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.415 0.585 34 H 0.069 0.931 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.471 -5.053 15.274 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.010 4.010 3 N -0.833 5.833 4 C 0.136 3.864 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.785 3.215 14 O -0.946 6.946 15 O -0.981 6.981 16 N -0.879 5.879 17 C 0.019 3.981 18 H 0.120 0.880 19 C -0.045 4.045 20 O -0.290 6.290 21 C -0.030 4.030 22 C -0.158 4.158 23 H 0.109 0.891 24 C -0.194 4.194 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.086 0.914 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.250 0.750 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.679 -4.932 15.227 16.983 hybrid contribution 0.333 0.112 -0.869 0.937 sum -5.346 -4.820 14.358 16.061 Atomic orbital electron populations 1.22240 0.96783 1.01076 1.02820 1.21138 0.93769 0.83150 1.02895 1.57727 1.73734 1.19609 1.32250 1.19022 0.97433 0.88198 0.81734 1.21479 1.11052 1.23052 1.01137 0.92247 1.24920 0.95968 0.94828 0.98278 1.69917 1.32520 1.25307 1.25769 0.86524 0.82227 0.77584 0.81285 1.20643 1.21078 1.19733 1.02108 0.73590 0.73349 0.72490 1.93649 1.65950 1.55497 1.79535 1.93531 1.76499 1.52720 1.75330 1.56358 1.49155 1.19769 1.62595 1.22027 0.88554 0.94611 0.92898 0.87973 1.23930 0.94489 0.96232 0.89848 1.89154 1.81640 1.42504 1.15704 1.23529 0.93201 0.95159 0.91128 1.22907 0.96511 1.01160 0.95256 0.89135 1.21679 0.97462 0.99843 1.00393 0.92370 0.93151 0.91389 0.90515 0.90721 0.94443 0.94527 0.92714 0.75049 0.91269 0.87707 0.89023 0.92229 0.92651 0.91996 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.73 37.16 0.36 -1.91 16 2 C 0.12 1.91 6.08 -4.04 -0.02 1.89 16 3 N -0.99 -19.58 2.93 -115.66 -0.34 -19.92 16 4 C 0.26 6.26 4.99 -5.20 -0.03 6.23 16 5 C -0.53 -14.63 9.38 -34.44 -0.32 -14.96 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.95 13.29 55.43 0.74 -25.21 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.77 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 S 2.78 53.20 5.95 -107.50 -0.64 52.56 16 14 O -0.96 -22.77 17.13 -57.17 -0.98 -23.75 16 15 O -1.00 -19.90 16.39 -57.17 -0.94 -20.84 16 16 N -1.12 -16.13 4.16 -3.55 -0.01 -16.14 16 17 C 0.13 1.53 3.36 -66.36 -0.22 1.31 16 18 H 0.10 1.17 6.32 -51.93 -0.33 0.84 16 19 C 0.03 0.38 6.40 37.93 0.24 0.62 16 20 O -0.37 -4.51 11.65 -35.23 -0.41 -4.92 16 21 C 0.05 0.44 7.18 37.93 0.27 0.71 16 22 C -0.14 -1.41 3.71 -89.05 -0.33 -1.74 16 23 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 24 C -0.14 -1.46 8.15 37.16 0.30 -1.15 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.59 5.62 -51.93 -0.29 0.30 16 27 H 0.07 1.02 7.14 -51.93 -0.37 0.65 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 1.11 6.78 -51.93 -0.35 0.76 16 30 H 0.04 0.91 6.87 -51.93 -0.36 0.56 16 31 H 0.04 0.95 7.62 -51.93 -0.40 0.56 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.42 5.56 7.84 -34.47 -0.27 5.29 16 34 H 0.07 0.65 8.01 -51.93 -0.42 0.23 16 35 H 0.10 1.27 8.06 -51.93 -0.42 0.85 16 36 H 0.09 0.75 7.87 -51.93 -0.41 0.34 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.76 8.01 -51.93 -0.42 0.34 16 40 H 0.06 0.66 7.03 -51.93 -0.37 0.30 16 LS Contribution 330.79 15.07 4.98 4.98 Total: -1.00 -33.46 330.79 -8.51 -41.97 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.05 Total: 1.84 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 0.16 Total: -7.35 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: 0.38 Total: -61.28 kcal Atomic # 8 Polarization: -47.18 SS G_CDS: -2.33 Total: -49.51 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 53.20 SS G_CDS: -0.64 Total: 52.56 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.46 -8.51 -41.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921498552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.498 kcal (2) G-P(sol) polarization free energy of solvation -33.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds