Wall clock time and date at job start Fri Apr 10 2020 17:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46733 * 2 1 4 4 C 1.46495 * 120.00203 * 294.66378 * 3 2 1 5 5 C 1.50703 * 109.47242 * 275.00395 * 4 3 2 6 6 H 1.07997 * 120.00033 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99872 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99868 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99764 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47044 * 89.99704 * 9 7 5 11 11 H 1.48496 * 109.47293 * 209.99638 * 9 7 5 12 12 H 1.48499 * 109.47302 * 329.99668 * 9 7 5 13 13 S 1.65606 * 120.00020 * 114.66601 * 3 2 1 14 14 O 1.42098 * 106.40228 * 155.95389 * 13 3 2 15 15 O 1.42097 * 106.40010 * 23.03406 * 13 3 2 16 16 N 1.65592 * 107.21901 * 269.49260 * 13 3 2 17 17 C 1.46503 * 120.00160 * 63.60527 * 16 13 3 18 18 H 1.09002 * 110.45464 * 354.75771 * 17 16 13 19 19 C 1.54481 * 110.51658 * 232.00556 * 17 16 13 20 20 O 1.44421 * 104.80055 * 265.33572 * 19 17 16 21 21 C 1.44428 * 105.27628 * 319.48111 * 20 19 17 22 22 C 1.54480 * 104.80084 * 40.51633 * 21 20 19 23 23 H 1.09000 * 110.51105 * 217.37365 * 22 21 20 24 24 C 1.53004 * 110.51061 * 94.80227 * 22 21 20 25 25 H 1.08997 * 109.46731 * 186.45677 * 1 2 3 26 26 H 1.08997 * 109.47148 * 306.45665 * 1 2 3 27 27 H 1.08999 * 109.46827 * 66.45616 * 1 2 3 28 28 H 1.08994 * 109.47483 * 240.00436 * 2 1 3 29 29 H 1.09004 * 109.47002 * 119.99283 * 2 1 3 30 30 H 1.09007 * 109.47036 * 35.00309 * 4 3 2 31 31 H 1.09001 * 109.47348 * 155.00057 * 4 3 2 32 32 H 0.97001 * 119.99380 * 180.02562 * 8 7 5 33 33 H 0.97002 * 120.00766 * 243.60735 * 16 13 3 34 34 H 1.08990 * 110.37592 * 146.49657 * 19 17 16 35 35 H 1.09006 * 110.36550 * 24.16054 * 19 17 16 36 36 H 1.08994 * 110.37250 * 159.34804 * 21 20 19 37 37 H 1.09001 * 110.37048 * 281.68570 * 21 20 19 38 38 H 1.09003 * 109.46824 * 61.45221 * 24 22 21 39 39 H 1.08994 * 109.46647 * 181.45423 * 24 22 21 40 40 H 1.08996 * 109.46864 * 301.45427 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7633 2.2483 -1.1529 5 6 2.8284 2.0244 -2.1952 6 1 3.6168 1.3082 -2.0165 7 6 2.7971 2.7348 -3.3766 8 7 1.8374 3.6073 -3.5939 9 14 4.1178 2.4577 -4.6682 10 1 3.6864 1.3796 -5.5939 11 1 4.3317 3.7117 -5.4344 12 1 5.3852 2.0617 -4.0033 13 16 2.8586 1.9625 1.3033 14 8 3.6524 3.0381 0.8217 15 8 3.4039 0.8302 1.9665 16 7 1.7534 2.6260 2.3428 17 6 0.7352 1.7784 2.9682 18 1 0.7886 0.7641 2.5727 19 6 -0.6734 2.3740 2.7504 20 8 -0.9320 3.1538 3.9382 21 6 -0.4194 2.3622 5.0321 22 6 0.9061 1.7703 4.5038 23 1 1.0415 0.7519 4.8678 24 6 2.0884 2.6483 4.9192 25 1 -0.3633 -1.0211 0.1156 26 1 -0.3633 0.6106 0.8265 27 1 -0.3633 0.4105 -0.9421 28 1 1.8934 -0.5137 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 0.7863 2.0131 -1.5754 31 1 1.7800 3.2907 -0.8344 32 1 1.8152 4.1067 -4.4252 33 1 1.7801 3.5758 2.5377 34 1 -1.4109 1.5777 2.6512 35 1 -0.6826 3.0132 1.8675 36 1 -0.2337 2.9921 5.9020 37 1 -1.1181 1.5640 5.2828 38 1 2.1500 2.6838 6.0069 39 1 3.0107 2.2298 4.5164 40 1 1.9465 3.6565 4.5302 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921498552.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:03 Heat of formation + Delta-G solvation = -149.428606 kcal Electronic energy + Delta-G solvation = -23452.243669 eV Core-core repulsion = 20006.792944 eV Total energy + Delta-G solvation = -3445.450725 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75576 -38.29825 -37.72693 -36.86690 -35.97022 -34.69680 -33.01729 -31.44781 -29.48386 -28.60083 -27.23274 -25.09888 -23.55307 -23.03723 -21.31330 -20.39569 -19.15266 -18.45034 -18.37058 -17.61784 -16.99822 -16.92904 -16.51349 -16.16586 -15.55266 -15.15023 -15.00427 -14.68986 -14.61401 -14.22509 -13.72786 -13.64565 -13.40520 -13.30124 -13.14886 -13.13170 -13.01933 -12.68822 -12.66172 -12.41756 -12.25986 -12.21924 -12.16633 -12.04668 -11.75278 -11.63179 -11.59878 -10.96074 -10.58018 -10.29211 -9.80145 -8.19964 -6.30855 -0.33357 1.38063 1.40629 1.50855 2.00804 2.40369 2.63212 3.03726 3.11261 3.43352 3.53803 3.81052 3.92803 3.96899 4.13385 4.19238 4.32061 4.45291 4.51795 4.58450 4.70985 4.78484 4.84040 4.90705 4.95667 5.02379 5.05552 5.15947 5.18563 5.22794 5.34512 5.41308 5.57627 5.72932 5.88310 5.89859 6.08442 6.14949 6.77313 7.37676 8.87514 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.024914 B = 0.005215 C = 0.005001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.605392 B = 5368.091905 C = 5597.966033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.107 3.893 3 N -0.995 5.995 4 C 0.275 3.725 5 C -0.548 4.548 6 H 0.049 0.951 7 C 0.013 3.987 8 N -0.924 5.924 9 Si 0.954 3.046 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.276 1.276 13 S 2.793 3.207 14 O -1.014 7.014 15 O -1.005 7.005 16 N -1.107 6.107 17 C 0.116 3.884 18 H 0.111 0.889 19 C 0.036 3.964 20 O -0.393 6.393 21 C 0.047 3.953 22 C -0.136 4.136 23 H 0.109 0.891 24 C -0.140 4.140 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.013 0.987 32 H 0.267 0.733 33 H 0.420 0.580 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.446 -6.368 16.491 19.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.837 5.837 4 C 0.152 3.848 5 C -0.587 4.587 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.201 1.201 13 S 2.802 3.198 14 O -0.998 6.998 15 O -0.989 6.989 16 N -0.869 5.869 17 C 0.008 3.992 18 H 0.129 0.871 19 C -0.043 4.043 20 O -0.312 6.312 21 C -0.029 4.029 22 C -0.156 4.156 23 H 0.127 0.873 24 C -0.198 4.198 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.053 0.947 31 H 0.031 0.969 32 H 0.076 0.924 33 H 0.256 0.744 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.662 -6.276 16.454 18.828 hybrid contribution 0.611 0.497 -1.131 1.378 sum -6.051 -5.779 15.323 17.459 Atomic orbital electron populations 1.22179 0.94168 1.03392 1.02394 1.21417 0.96045 0.81188 1.03146 1.57594 1.73977 1.20681 1.31418 1.18539 0.96257 0.87717 0.82330 1.21841 1.11634 1.22884 1.02369 0.93232 1.25702 0.97986 0.94651 1.00302 1.70004 1.33906 1.25992 1.26458 0.85623 0.79436 0.78035 0.79027 1.19018 1.20462 1.20087 1.01358 0.73552 0.72442 0.72460 1.93573 1.68292 1.57224 1.80718 1.93511 1.77074 1.52992 1.75279 1.55915 1.49186 1.20307 1.61483 1.22392 0.88135 0.94462 0.94231 0.87141 1.23926 0.94457 0.96532 0.89343 1.89138 1.81887 1.43619 1.16532 1.23697 0.92867 0.95768 0.90563 1.22950 0.96843 1.02184 0.93634 0.87301 1.21716 0.96817 0.99454 1.01818 0.89058 0.91480 0.93475 0.91910 0.88837 0.94738 0.96915 0.92440 0.74373 0.88707 0.89180 0.87868 0.89926 0.90453 0.94038 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 9.73 71.98 0.70 -3.32 16 2 C 0.11 3.41 6.08 86.38 0.53 3.94 16 3 N -1.00 -39.63 2.93 -519.83 -1.52 -41.15 16 4 C 0.28 13.70 4.99 85.63 0.43 14.13 16 5 C -0.55 -31.03 9.38 25.60 0.24 -30.79 16 6 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 7 C 0.01 0.74 5.46 84.66 0.46 1.20 16 8 N -0.92 -54.20 13.29 21.45 0.28 -53.92 16 9 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 13 S 2.79 108.01 5.95 -56.49 -0.34 107.67 16 14 O -1.01 -49.61 17.13 -128.00 -2.19 -51.80 16 15 O -1.01 -39.58 16.39 -128.00 -2.10 -41.68 16 16 N -1.11 -31.44 4.16 -165.16 -0.69 -32.13 16 17 C 0.12 2.53 3.36 46.01 0.15 2.68 16 18 H 0.11 2.23 6.32 -2.39 -0.02 2.22 16 19 C 0.04 0.73 6.40 72.49 0.46 1.19 16 20 O -0.39 -8.65 11.65 -148.98 -1.74 -10.39 16 21 C 0.05 0.73 7.18 72.49 0.52 1.25 16 22 C -0.14 -2.41 3.71 -9.78 -0.04 -2.44 16 23 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 24 C -0.14 -2.77 8.15 71.98 0.59 -2.19 16 25 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.07 1.41 5.62 -2.39 -0.01 1.40 16 27 H 0.05 1.37 7.14 -2.39 -0.02 1.35 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.14 16 29 H 0.09 2.61 6.78 -2.39 -0.02 2.60 16 30 H 0.03 1.73 6.87 -2.38 -0.02 1.71 16 31 H 0.01 0.70 7.62 -2.39 -0.02 0.68 16 32 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 33 H 0.42 11.33 7.84 -96.74 -0.76 10.58 16 34 H 0.09 1.46 8.01 -2.39 -0.02 1.44 16 35 H 0.09 2.11 8.06 -2.38 -0.02 2.09 16 36 H 0.10 1.36 7.87 -2.39 -0.02 1.34 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.04 0.98 8.01 -2.39 -0.02 0.96 16 40 H 0.05 1.13 7.03 -2.39 -0.02 1.11 16 Total: -1.00 -72.71 330.79 -1.93 -74.64 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.28 Total: 16.15 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 4.04 Total: -14.34 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -1.92 Total: -127.20 kcal Atomic # 8 Polarization: -97.84 SS G_CDS: -6.03 Total: -103.86 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 108.01 SS G_CDS: -0.34 Total: 107.67 kcal Total: -72.71 -1.93 -74.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921498552.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.787 kcal (2) G-P(sol) polarization free energy of solvation -72.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds