Wall clock time and date at job start Fri Apr 10 2020 17:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47149 * 2 1 4 4 O 1.42093 * 110.54547 * 291.62539 * 3 2 1 5 5 O 1.42105 * 110.53941 * 68.37879 * 3 2 1 6 6 N 1.65595 * 104.44822 * 179.97438 * 3 2 1 7 7 C 1.47083 * 120.88519 * 269.72650 * 6 3 2 8 8 C 1.53693 * 108.28236 * 128.75463 * 7 6 3 9 9 N 1.46904 * 109.25439 * 54.08060 * 8 7 6 10 10 C 1.46904 * 110.99635 * 172.61026 * 9 8 7 11 11 C 1.52995 * 109.47198 * 314.30370 * 10 9 8 12 12 H 1.08995 * 109.47285 * 60.00103 * 11 10 9 13 13 O 1.42906 * 109.46993 * 299.99696 * 11 10 9 14 14 C 1.50696 * 109.47192 * 180.02562 * 11 10 9 15 15 H 1.08001 * 119.99735 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00326 * 179.97438 * 14 11 10 17 17 N 1.31521 * 120.00136 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 119.99869 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.47040 * 89.99957 * 18 16 14 20 20 H 1.48497 * 109.47049 * 210.00008 * 18 16 14 21 21 H 1.48495 * 109.46915 * 330.00142 * 18 16 14 22 22 C 1.46901 * 111.26825 * 296.75716 * 9 8 7 23 23 C 1.47087 * 120.88365 * 90.00077 * 6 3 2 24 24 H 1.08998 * 109.47533 * 59.99620 * 1 2 3 25 25 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99990 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00010 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00201 * 2 1 3 29 29 H 1.09004 * 109.62867 * 248.52427 * 7 6 3 30 30 H 1.08996 * 109.62608 * 9.09643 * 7 6 3 31 31 H 1.09002 * 109.64303 * 294.08358 * 8 7 6 32 32 H 1.08994 * 109.42472 * 173.94561 * 8 7 6 33 33 H 1.08995 * 109.46993 * 74.30489 * 10 9 8 34 34 H 1.09002 * 109.47099 * 194.29902 * 10 9 8 35 35 H 0.96694 * 113.99961 * 300.00764 * 13 11 10 36 36 H 0.96998 * 119.99340 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.49462 * 303.14785 * 22 9 8 38 38 H 1.09002 * 109.51121 * 183.08049 * 22 9 8 39 39 H 1.09005 * 109.62360 * 350.89978 * 23 6 3 40 40 H 1.08995 * 109.62513 * 111.47377 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3439 -1.2369 5 8 1.8386 2.3438 1.2371 6 7 3.7842 1.5653 0.0007 7 6 4.5363 1.5053 1.2633 8 6 5.4642 0.2811 1.2141 9 7 6.2911 0.3484 0.0018 10 6 7.3129 -0.7072 0.0023 11 6 7.9847 -0.7660 1.3757 12 1 7.2362 -0.9845 2.1372 13 8 8.5997 0.4924 1.6593 14 6 9.0332 -1.8483 1.3760 15 1 9.2031 -2.4358 0.4858 16 6 9.7757 -2.0886 2.5127 17 7 10.6904 -3.0336 2.5131 18 14 9.4823 -1.0720 4.0521 19 1 8.4470 -1.7293 4.8895 20 1 10.7471 -0.9642 4.8226 21 1 9.0194 0.2857 3.6679 22 6 5.4651 0.2809 -1.2111 23 6 4.5369 1.4990 -1.2613 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.1286 2.4130 1.3801 30 1 3.8427 1.4075 2.0983 31 1 4.8672 -0.6307 1.1970 32 1 6.1079 0.2785 2.0937 33 1 6.8438 -1.6669 -0.2141 34 1 8.0614 -0.4887 -0.7593 35 1 9.2779 0.7516 1.0207 36 1 11.2124 -3.2028 3.3130 37 1 4.8681 -0.6309 -1.1943 38 1 6.1091 0.2778 -2.0905 39 1 3.8435 1.3968 -2.0961 40 1 5.1291 2.4060 -1.3824 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929422510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:13 Heat of formation + Delta-G solvation = -102.286112 kcal Electronic energy + Delta-G solvation = -22767.854328 eV Core-core repulsion = 19324.447854 eV Total energy + Delta-G solvation = -3443.406473 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.00250 -37.32722 -36.35300 -36.09277 -33.94448 -33.45118 -32.28229 -31.13083 -29.04843 -26.55747 -24.42928 -23.94716 -23.56903 -20.94684 -19.93975 -18.88655 -18.04275 -17.28319 -16.60738 -16.43526 -15.20811 -14.96571 -14.94021 -14.86641 -14.64942 -14.35297 -14.12989 -13.80216 -13.65328 -13.34255 -12.84117 -12.77427 -12.54906 -12.36908 -12.27210 -11.91652 -11.88101 -11.63975 -11.47443 -11.25274 -11.12919 -10.97100 -10.92009 -10.63716 -10.37183 -9.91161 -9.20207 -8.97657 -8.66974 -8.27600 -7.92597 -6.18091 -4.29935 0.04425 2.44049 3.34334 3.45303 3.63547 3.70833 3.89627 4.15980 4.25667 4.46059 4.48566 4.56651 4.83684 5.04247 5.14009 5.17264 5.23928 5.27631 5.31079 5.36693 5.46206 5.53573 5.67727 5.76794 5.87120 5.92757 5.99731 6.06839 6.09061 6.20348 6.46643 6.57337 7.18751 7.30331 7.43868 7.61056 8.23975 8.77838 9.02861 9.46292 10.92531 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029179 B = 0.004047 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.377776 B = 6917.713016 C = 7093.327105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.635 4.635 3 S 2.609 3.391 4 O -0.957 6.957 5 O -0.955 6.955 6 N -1.000 6.000 7 C 0.127 3.873 8 C 0.034 3.966 9 N -0.527 5.527 10 C 0.040 3.960 11 C 0.194 3.806 12 H 0.055 0.945 13 O -0.572 6.572 14 C -0.567 4.567 15 H 0.071 0.929 16 C 0.084 3.916 17 N -0.893 5.893 18 Si 0.870 3.130 19 H -0.288 1.288 20 H -0.295 1.295 21 H -0.215 1.215 22 C 0.038 3.962 23 C 0.129 3.871 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.130 0.870 28 H 0.131 0.869 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.104 0.896 33 H 0.032 0.968 34 H 0.073 0.927 35 H 0.358 0.642 36 H 0.265 0.735 37 H 0.031 0.969 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.465 6.669 -6.391 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.764 4.764 3 S 2.702 3.298 4 O -0.947 6.947 5 O -0.945 6.945 6 N -0.839 5.839 7 C 0.002 3.998 8 C -0.095 4.095 9 N -0.252 5.252 10 C -0.087 4.087 11 C 0.137 3.863 12 H 0.073 0.927 13 O -0.378 6.378 14 C -0.605 4.605 15 H 0.089 0.911 16 C -0.121 4.121 17 N -0.530 5.530 18 Si 0.696 3.304 19 H -0.215 1.215 20 H -0.222 1.222 21 H -0.137 1.137 22 C -0.092 4.092 23 C 0.003 3.997 24 H 0.089 0.911 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.148 0.852 28 H 0.149 0.851 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.048 0.952 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.091 0.909 35 H 0.204 0.796 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.000 7.831 -5.801 20.469 hybrid contribution 0.202 -1.574 0.271 1.609 sum -17.798 6.257 -5.530 19.660 Atomic orbital electron populations 1.21493 0.90653 1.04995 1.03312 1.30601 1.07021 1.27140 1.11669 1.05130 0.73016 0.77455 0.74242 1.93580 1.83379 1.72492 1.45285 1.93592 1.83300 1.72440 1.45157 1.57780 1.23628 1.89591 1.12876 1.21704 0.94462 0.99972 0.83626 1.22713 0.95415 0.95636 0.95761 1.61903 1.13737 1.48884 1.00652 1.22845 0.93366 0.90733 1.01770 1.19825 0.92757 0.83250 0.90513 0.92731 1.86636 1.56931 1.40018 1.54195 1.21491 1.20094 1.18526 1.00408 0.91102 1.24991 0.93713 0.94063 0.99284 1.69959 1.22387 1.31136 1.29479 0.87046 0.77474 0.84483 0.81390 1.21504 1.22191 1.13677 1.22498 0.95554 0.96267 0.94874 1.21529 0.94537 0.99587 0.84028 0.91064 0.90087 0.90998 0.85200 0.85051 0.89822 0.89348 0.95170 0.87799 0.94986 0.90862 0.79608 0.92535 0.95087 0.89754 0.89444 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.92 37.16 0.37 -0.67 16 2 C -0.64 -5.00 6.90 37.16 0.26 -4.75 16 3 S 2.61 28.84 5.42 -107.50 -0.58 28.26 16 4 O -0.96 -12.82 16.79 -57.54 -0.97 -13.79 16 5 O -0.95 -13.29 16.78 -57.54 -0.97 -14.25 16 6 N -1.00 -11.54 3.25 -112.97 -0.37 -11.91 16 7 C 0.13 1.60 6.49 -3.36 -0.02 1.58 16 8 C 0.03 0.50 5.06 -3.46 -0.02 0.48 16 9 N -0.53 -8.04 4.64 -234.03 -1.09 -9.13 16 10 C 0.04 0.72 4.87 -3.82 -0.02 0.70 16 11 C 0.19 4.21 1.60 -27.89 -0.04 4.16 16 12 H 0.06 1.21 5.61 -51.93 -0.29 0.92 16 13 O -0.57 -12.19 9.81 -35.23 -0.35 -12.53 16 14 C -0.57 -15.08 9.34 -34.44 -0.32 -15.40 16 15 H 0.07 2.04 7.99 -52.49 -0.42 1.62 16 16 C 0.08 2.35 5.47 -17.82 -0.10 2.25 16 17 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 18 Si 0.87 21.07 26.99 -169.99 -4.59 16.48 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.21 -5.03 5.30 56.52 0.30 -4.73 16 22 C 0.04 0.46 5.58 -3.70 -0.02 0.44 16 23 C 0.13 1.41 6.46 -3.60 -0.02 1.39 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.13 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 0.99 7.18 -51.93 -0.37 0.61 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 1.72 5.58 -51.93 -0.29 1.43 16 33 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.36 6.92 9.04 45.56 0.41 7.34 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 39 H 0.09 0.80 7.19 -51.93 -0.37 0.43 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -33.77 327.37 -8.78 -42.55 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -5.64 Total: 5.07 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 0.06 Total: -9.81 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.68 Total: -46.91 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -2.28 Total: -40.57 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.59 Total: 16.48 kcal Atomic # 16 Polarization: 28.84 SS G_CDS: -0.58 Total: 28.26 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.77 -8.78 -42.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929422510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.735 kcal (2) G-P(sol) polarization free energy of solvation -33.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds