Wall clock time and date at job start Fri Apr 10 2020 17:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 S 1.81401 * 109.47149 * 2 1 4 4 O 1.42093 * 110.54547 * 291.62539 * 3 2 1 5 5 O 1.42105 * 110.53941 * 68.37879 * 3 2 1 6 6 N 1.65595 * 104.44822 * 179.97438 * 3 2 1 7 7 C 1.47083 * 120.88519 * 269.72650 * 6 3 2 8 8 C 1.53693 * 108.28236 * 128.75463 * 7 6 3 9 9 N 1.46904 * 109.25439 * 54.08060 * 8 7 6 10 10 C 1.46904 * 110.99635 * 172.61026 * 9 8 7 11 11 C 1.52995 * 109.47198 * 314.30370 * 10 9 8 12 12 H 1.08995 * 109.47285 * 60.00103 * 11 10 9 13 13 O 1.42906 * 109.46993 * 299.99696 * 11 10 9 14 14 C 1.50696 * 109.47192 * 180.02562 * 11 10 9 15 15 H 1.08001 * 119.99735 * 359.97438 * 14 11 10 16 16 C 1.37874 * 120.00326 * 179.97438 * 14 11 10 17 17 N 1.31521 * 120.00136 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 119.99869 * 359.97438 * 16 14 11 19 19 H 1.48499 * 109.47040 * 89.99957 * 18 16 14 20 20 H 1.48497 * 109.47049 * 210.00008 * 18 16 14 21 21 H 1.48495 * 109.46915 * 330.00142 * 18 16 14 22 22 C 1.46901 * 111.26825 * 296.75716 * 9 8 7 23 23 C 1.47087 * 120.88365 * 90.00077 * 6 3 2 24 24 H 1.08998 * 109.47533 * 59.99620 * 1 2 3 25 25 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 299.99990 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00010 * 2 1 3 28 28 H 1.09001 * 109.46832 * 120.00201 * 2 1 3 29 29 H 1.09004 * 109.62867 * 248.52427 * 7 6 3 30 30 H 1.08996 * 109.62608 * 9.09643 * 7 6 3 31 31 H 1.09002 * 109.64303 * 294.08358 * 8 7 6 32 32 H 1.08994 * 109.42472 * 173.94561 * 8 7 6 33 33 H 1.08995 * 109.46993 * 74.30489 * 10 9 8 34 34 H 1.09002 * 109.47099 * 194.29902 * 10 9 8 35 35 H 0.96694 * 113.99961 * 300.00764 * 13 11 10 36 36 H 0.96998 * 119.99340 * 180.02562 * 17 16 14 37 37 H 1.08997 * 109.49462 * 303.14785 * 22 9 8 38 38 H 1.09002 * 109.51121 * 183.08049 * 22 9 8 39 39 H 1.09005 * 109.62360 * 350.89978 * 23 6 3 40 40 H 1.08995 * 109.62513 * 111.47377 * 23 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3439 -1.2369 5 8 1.8386 2.3438 1.2371 6 7 3.7842 1.5653 0.0007 7 6 4.5363 1.5053 1.2633 8 6 5.4642 0.2811 1.2141 9 7 6.2911 0.3484 0.0018 10 6 7.3129 -0.7072 0.0023 11 6 7.9847 -0.7660 1.3757 12 1 7.2362 -0.9845 2.1372 13 8 8.5997 0.4924 1.6593 14 6 9.0332 -1.8483 1.3760 15 1 9.2031 -2.4358 0.4858 16 6 9.7757 -2.0886 2.5127 17 7 10.6904 -3.0336 2.5131 18 14 9.4823 -1.0720 4.0521 19 1 8.4470 -1.7293 4.8895 20 1 10.7471 -0.9642 4.8226 21 1 9.0194 0.2857 3.6679 22 6 5.4651 0.2809 -1.2111 23 6 4.5369 1.4990 -1.2613 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.1286 2.4130 1.3801 30 1 3.8427 1.4075 2.0983 31 1 4.8672 -0.6307 1.1970 32 1 6.1079 0.2785 2.0937 33 1 6.8438 -1.6669 -0.2141 34 1 8.0614 -0.4887 -0.7593 35 1 9.2779 0.7516 1.0207 36 1 11.2124 -3.2028 3.3130 37 1 4.8681 -0.6309 -1.1943 38 1 6.1091 0.2778 -2.0905 39 1 3.8435 1.3968 -2.0961 40 1 5.1291 2.4060 -1.3824 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929422510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:13 Heat of formation + Delta-G solvation = -131.364695 kcal Electronic energy + Delta-G solvation = -22769.115270 eV Core-core repulsion = 19324.447854 eV Total energy + Delta-G solvation = -3444.667415 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.129 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.15359 -38.27164 -37.85766 -37.05992 -35.18526 -34.37552 -34.04239 -32.12505 -30.63376 -28.03006 -25.43914 -25.00040 -24.68881 -22.27633 -21.21977 -19.82678 -19.46060 -18.70102 -17.44464 -17.31391 -16.82113 -16.56212 -16.30905 -15.80100 -15.75759 -15.52075 -15.27453 -15.10967 -14.73207 -14.57803 -14.13325 -13.70428 -13.43878 -13.42033 -13.36423 -13.24216 -12.93788 -12.87575 -12.70784 -12.45246 -12.43876 -12.38109 -12.20771 -11.86521 -11.65749 -11.43651 -10.92339 -10.78384 -10.15063 -9.97670 -9.10298 -8.33701 -6.48154 -0.78136 1.41268 1.48540 1.58349 1.77875 2.45436 2.84012 2.99137 3.05867 3.08916 3.54614 3.76397 3.84048 4.03499 4.09769 4.19761 4.27869 4.33717 4.35142 4.44309 4.54917 4.60481 4.67424 4.76630 4.82517 4.83963 4.98513 5.01475 5.07217 5.13296 5.17023 5.48709 5.53265 5.54282 6.08832 6.16304 6.28867 6.65171 7.24569 7.39525 8.80529 Molecular weight = 292.13amu Principal moments of inertia in cm(-1) A = 0.029179 B = 0.004047 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.377776 B = 6917.713016 C = 7093.327105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.614 4.614 3 S 2.612 3.388 4 O -0.985 6.985 5 O -0.989 6.989 6 N -1.003 6.003 7 C 0.133 3.867 8 C 0.033 3.967 9 N -0.534 5.534 10 C 0.054 3.946 11 C 0.202 3.798 12 H 0.056 0.944 13 O -0.573 6.573 14 C -0.566 4.566 15 H 0.035 0.965 16 C 0.029 3.971 17 N -0.942 5.942 18 Si 0.936 3.064 19 H -0.284 1.284 20 H -0.301 1.301 21 H -0.200 1.200 22 C 0.037 3.963 23 C 0.129 3.871 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.146 0.854 29 H 0.074 0.926 30 H 0.102 0.898 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.070 0.930 35 H 0.367 0.633 36 H 0.266 0.734 37 H 0.043 0.957 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.443 7.136 -6.603 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.747 4.747 3 S 2.709 3.291 4 O -0.975 6.975 5 O -0.980 6.980 6 N -0.841 5.841 7 C 0.007 3.993 8 C -0.096 4.096 9 N -0.259 5.259 10 C -0.074 4.074 11 C 0.144 3.856 12 H 0.074 0.926 13 O -0.380 6.380 14 C -0.604 4.604 15 H 0.054 0.946 16 C -0.171 4.171 17 N -0.581 5.581 18 Si 0.760 3.240 19 H -0.211 1.211 20 H -0.229 1.229 21 H -0.122 1.122 22 C -0.092 4.092 23 C 0.004 3.996 24 H 0.094 0.906 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.169 0.831 28 H 0.164 0.836 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.089 0.911 35 H 0.215 0.785 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.112 0.888 39 H 0.127 0.873 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.981 8.353 -6.036 22.482 hybrid contribution 0.773 -1.777 0.240 1.953 sum -19.208 6.575 -5.796 21.113 Atomic orbital electron populations 1.21678 0.89923 1.06383 1.03752 1.30404 1.07571 1.23205 1.13489 1.04916 0.72525 0.78711 0.72927 1.93540 1.83574 1.74370 1.46038 1.93546 1.83618 1.74494 1.46293 1.57718 1.23811 1.89930 1.12624 1.21588 0.94447 0.98575 0.84657 1.22697 0.95328 0.97077 0.94536 1.61851 1.14372 1.47422 1.02259 1.22496 0.94105 0.91577 0.99181 1.19642 0.91398 0.81706 0.92856 0.92600 1.86574 1.57353 1.39222 1.54808 1.21875 1.20765 1.19007 0.98779 0.94631 1.25849 0.93578 0.95107 1.02565 1.70092 1.24158 1.33424 1.30451 0.86036 0.76939 0.83484 0.77528 1.21084 1.22867 1.12198 1.22600 0.95639 0.97338 0.93621 1.21585 0.94740 0.98793 0.84486 0.90606 0.88136 0.90900 0.83135 0.83612 0.90802 0.87996 0.94040 0.89959 0.95432 0.91130 0.78546 0.92552 0.93857 0.88790 0.87333 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.92 71.98 0.71 -1.03 16 2 C -0.61 -7.48 6.90 71.98 0.50 -6.99 16 3 S 2.61 52.44 5.42 -56.49 -0.31 52.14 16 4 O -0.98 -24.72 16.79 -127.65 -2.14 -26.87 16 5 O -0.99 -26.27 16.78 -127.65 -2.14 -28.42 16 6 N -1.00 -20.94 3.25 -511.33 -1.66 -22.60 16 7 C 0.13 3.09 6.49 86.50 0.56 3.65 16 8 C 0.03 0.90 5.06 86.54 0.44 1.33 16 9 N -0.53 -15.25 4.64 -894.33 -4.15 -19.40 16 10 C 0.05 1.89 4.87 86.30 0.42 2.31 16 11 C 0.20 8.55 1.60 29.85 0.05 8.60 16 12 H 0.06 2.40 5.61 -2.39 -0.01 2.38 16 13 O -0.57 -23.48 9.81 -148.98 -1.46 -24.94 16 14 C -0.57 -30.34 9.34 25.60 0.24 -30.10 16 15 H 0.04 2.11 7.99 -2.91 -0.02 2.08 16 16 C 0.03 1.60 5.47 84.65 0.46 2.06 16 17 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 18 Si 0.94 43.59 26.99 68.60 1.85 45.44 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 21 H -0.20 -8.79 5.30 99.48 0.53 -8.26 16 22 C 0.04 0.80 5.58 86.38 0.48 1.29 16 23 C 0.13 2.51 6.46 86.34 0.56 3.07 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.76 16 25 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.15 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.10 2.08 7.18 -2.39 -0.02 2.06 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 2.59 5.58 -2.39 -0.01 2.58 16 33 H 0.03 0.98 8.08 -2.39 -0.02 0.96 16 34 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.37 13.69 9.04 -74.06 -0.67 13.02 16 36 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 37 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.85 8.11 -2.39 -0.02 1.83 16 39 H 0.11 1.68 7.19 -2.38 -0.02 1.66 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -72.77 327.37 -5.12 -77.89 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.18 Total: 19.67 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 4.42 Total: -15.81 kcal Atomic # 7 Polarization: -93.58 SS G_CDS: -5.52 Total: -99.10 kcal Atomic # 8 Polarization: -74.48 SS G_CDS: -5.75 Total: -80.22 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.85 Total: 45.44 kcal Atomic # 16 Polarization: 52.44 SS G_CDS: -0.31 Total: 52.14 kcal Total: -72.77 -5.12 -77.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929422510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.479 kcal (2) G-P(sol) polarization free energy of solvation -72.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds