Wall clock time and date at job start Fri Apr 10 2020 17:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35992 * 117.00434 * 2 1 4 4 C 1.38566 * 120.07051 * 0.02562 * 3 2 1 5 5 C 1.38240 * 119.99940 * 179.69981 * 4 3 2 6 6 C 1.38254 * 120.14335 * 0.55381 * 5 4 3 7 7 C 1.50703 * 119.92696 * 179.72267 * 6 5 4 8 8 C 1.52996 * 109.47130 * 269.72137 * 7 6 5 9 9 C 1.52997 * 109.47131 * 179.97438 * 8 7 6 10 10 N 1.46506 * 109.47289 * 180.02562 * 9 8 7 11 11 C 1.34774 * 120.00072 * 180.02562 * 10 9 8 12 12 O 1.21682 * 120.00244 * 0.02562 * 11 10 9 13 13 C 1.46376 * 119.99597 * 180.02562 * 11 10 9 14 14 H 1.07995 * 120.00074 * 359.97438 * 13 11 10 15 15 C 1.40050 * 119.99840 * 179.97438 * 13 11 10 16 16 N 1.30681 * 119.99902 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00281 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47026 * 89.99977 * 17 15 13 19 19 H 1.48492 * 109.47108 * 210.00013 * 17 15 13 20 20 H 1.48501 * 109.46758 * 330.00129 * 17 15 13 21 21 C 1.38245 * 120.14760 * 359.44113 * 6 5 4 22 22 C 1.38565 * 119.99588 * 0.28514 * 21 6 5 23 23 O 1.35991 * 120.06982 * 179.97438 * 22 21 6 24 24 C 1.42900 * 117.00257 * 359.97438 * 23 22 21 25 25 H 1.09004 * 109.46881 * 59.99902 * 1 2 3 26 26 H 1.08998 * 109.47680 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46880 * 300.00332 * 1 2 3 28 28 H 1.08003 * 120.00470 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.93160 * 180.29328 * 5 4 3 30 30 H 1.09001 * 109.46980 * 149.72372 * 7 6 5 31 31 H 1.09004 * 109.47113 * 29.72353 * 7 6 5 32 32 H 1.09001 * 109.46997 * 60.00245 * 8 7 6 33 33 H 1.08996 * 109.47452 * 299.99818 * 8 7 6 34 34 H 1.09001 * 109.47289 * 60.00050 * 9 8 7 35 35 H 1.09004 * 109.47261 * 300.00306 * 9 8 7 36 36 H 0.97001 * 119.99251 * 0.02562 * 10 9 8 37 37 H 0.96999 * 120.00129 * 179.97438 * 16 15 13 38 38 H 1.07999 * 119.99842 * 180.25378 * 21 6 5 39 39 H 1.08997 * 109.47381 * 60.00228 * 24 23 22 40 40 H 1.09002 * 109.47265 * 180.02562 * 24 23 22 41 41 H 1.09003 * 109.46976 * 300.00103 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2934 2.3747 0.0005 5 6 1.9226 3.6056 0.0068 6 6 3.3031 3.6797 0.0010 7 6 3.9839 5.0241 0.0016 8 6 4.2143 5.4797 -1.4407 9 6 4.9049 6.8450 -1.4402 10 7 5.1250 7.2815 -2.8212 11 6 5.7235 8.4638 -3.0670 12 8 6.0816 9.1685 -2.1418 13 6 5.9429 8.9002 -4.4469 14 1 5.6255 8.2745 -5.2680 15 6 6.5643 10.1289 -4.7023 16 7 6.9488 10.8857 -3.7087 17 14 6.8449 10.6856 -6.4632 18 1 5.6700 11.4650 -6.9291 19 1 8.0600 11.5369 -6.5256 20 1 7.0278 9.4972 -7.3348 21 6 4.0604 2.5231 0.0006 22 6 3.4360 1.2862 0.0000 23 8 4.1795 0.1475 -0.0010 24 6 5.6003 0.3004 -0.0019 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2147 2.3197 0.0005 29 1 1.3345 4.5114 0.0120 30 1 4.9421 4.9460 0.5153 31 1 3.3541 5.7502 0.5158 32 1 3.2562 5.5579 -1.9545 33 1 4.8442 4.7538 -1.9549 34 1 5.8631 6.7673 -0.9262 35 1 4.2747 7.5708 -0.9261 36 1 4.8399 6.7196 -3.5587 37 1 7.3796 11.7366 -3.8856 38 1 5.1387 2.5838 0.0002 39 1 5.9072 0.8497 0.8880 40 1 6.0715 -0.6825 -0.0031 41 1 5.9059 0.8505 -0.8919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002226267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:26 Heat of formation + Delta-G solvation = -101.492368 kcal Electronic energy + Delta-G solvation = -22330.370518 eV Core-core repulsion = 18789.668944 eV Total energy + Delta-G solvation = -3540.701573 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74420 -38.62620 -37.79960 -37.14595 -34.64104 -32.63011 -31.98480 -30.50370 -29.69547 -27.69299 -27.45693 -26.37261 -24.66034 -22.36328 -21.88848 -20.88403 -19.61628 -18.58012 -17.21607 -17.08779 -16.92062 -16.25798 -15.44530 -15.28606 -15.00434 -14.94992 -14.81281 -14.63241 -14.01370 -13.85844 -13.48691 -13.09544 -12.69184 -12.48795 -12.31524 -12.23767 -12.07082 -11.51293 -11.42857 -11.39608 -11.27739 -11.13519 -10.96601 -10.85827 -10.71565 -10.41003 -10.40386 -10.19360 -8.85409 -8.83245 -7.90913 -7.58390 -7.46019 -6.16386 -4.61738 1.12016 1.27913 3.06365 3.09077 3.15257 3.21878 3.25468 3.53559 4.12398 4.55492 4.60108 4.61565 4.75550 4.87081 4.89459 4.93479 4.98259 4.99277 5.08681 5.19870 5.26389 5.28774 5.32364 5.43607 5.59342 5.64311 5.78094 5.93164 5.93758 6.02669 6.12483 6.19773 6.48202 6.52980 6.64996 6.66623 6.84877 7.39330 7.45410 7.96615 8.14272 8.35954 9.04636 9.57498 10.62733 10.81607 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025983 B = 0.002420 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.376568 B =11565.532310 C =11755.025123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.088 3.912 4 C -0.170 4.170 5 C -0.114 4.114 6 C -0.069 4.069 7 C -0.076 4.076 8 C -0.121 4.121 9 C 0.133 3.867 10 N -0.769 5.769 11 C 0.554 3.446 12 O -0.582 6.582 13 C -0.546 4.546 14 H 0.067 0.933 15 C 0.087 3.913 16 N -0.769 5.769 17 Si 0.908 3.092 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.265 1.265 21 C -0.169 4.169 22 C 0.100 3.900 23 O -0.309 6.309 24 C 0.026 3.974 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.053 0.947 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.047 0.953 36 H 0.380 0.620 37 H 0.268 0.732 38 H 0.136 0.864 39 H 0.055 0.945 40 H 0.099 0.901 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.262 -21.092 7.500 24.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.043 3.957 4 C -0.188 4.188 5 C -0.132 4.132 6 C -0.069 4.069 7 C -0.114 4.114 8 C -0.159 4.159 9 C 0.007 3.993 10 N -0.425 5.425 11 C 0.357 3.643 12 O -0.465 6.465 13 C -0.583 4.583 14 H 0.085 0.915 15 C -0.133 4.133 16 N -0.398 5.398 17 Si 0.732 3.268 18 H -0.198 1.198 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.188 4.188 22 C 0.055 3.945 23 O -0.223 6.223 24 C -0.070 4.070 25 H 0.073 0.927 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.211 0.789 37 H 0.079 0.921 38 H 0.154 0.846 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.873 -20.783 8.269 24.450 hybrid contribution -0.067 0.285 -1.234 1.268 sum -9.939 -20.498 7.035 23.842 Atomic orbital electron populations 1.23041 0.78781 1.03791 1.01197 1.86152 1.20832 1.26080 1.89294 1.18218 0.89120 0.85158 1.03215 1.21041 0.99819 0.91500 1.06468 1.20803 0.93962 0.97104 1.01347 1.19685 0.93330 0.94893 0.98997 1.20535 1.00625 0.92534 0.97736 1.21763 1.01181 0.97365 0.95612 1.20871 0.98621 0.92963 0.86811 1.46135 1.67620 1.23678 1.05059 1.18219 0.76898 0.78583 0.90554 1.90591 1.54761 1.54590 1.46594 1.20898 1.41674 1.04684 0.91072 0.91472 1.25718 0.93478 0.95953 0.98119 1.70029 1.28798 1.09187 1.31787 0.86376 0.78222 0.79099 0.83061 1.19756 1.20473 1.18937 1.21004 1.00466 0.90520 1.06764 1.18225 0.88208 0.86067 1.02039 1.86147 1.18705 1.28340 1.89111 1.23077 0.78590 1.03785 1.01507 0.92745 0.88373 0.92812 0.84887 0.85390 0.90746 0.90497 0.91603 0.91751 0.93512 0.93463 0.78923 0.92148 0.84645 0.92651 0.88288 0.92494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.62 10.28 -34.22 -0.35 -3.97 16 3 C 0.09 1.07 6.70 -39.12 -0.26 0.80 16 4 C -0.17 -1.76 9.04 -39.46 -0.36 -2.12 16 5 C -0.11 -1.23 9.69 -39.57 -0.38 -1.61 16 6 C -0.07 -0.79 5.13 -104.61 -0.54 -1.33 16 7 C -0.08 -0.90 5.34 -27.88 -0.15 -1.05 16 8 C -0.12 -1.68 5.31 -26.73 -0.14 -1.83 16 9 C 0.13 2.52 5.67 -4.04 -0.02 2.50 16 10 N -0.77 -17.46 5.55 -61.72 -0.34 -17.80 16 11 C 0.55 16.06 7.75 -12.99 -0.10 15.96 16 12 O -0.58 -19.22 15.02 5.20 0.08 -19.14 16 13 C -0.55 -15.65 9.54 -35.63 -0.34 -15.99 16 14 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 15 C 0.09 2.45 5.50 -17.36 -0.10 2.36 16 16 N -0.77 -23.37 11.83 55.55 0.66 -22.71 16 17 Si 0.91 20.31 29.56 -169.99 -5.02 15.28 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 C -0.17 -1.94 8.69 -39.46 -0.34 -2.28 16 22 C 0.10 1.25 6.70 -39.12 -0.26 0.99 16 23 O -0.31 -3.78 10.28 -34.22 -0.35 -4.13 16 24 C 0.03 0.21 9.81 101.05 0.99 1.20 16 25 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 26 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 28 H 0.13 1.04 6.30 -52.48 -0.33 0.71 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 31 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.38 7.56 8.45 -40.82 -0.35 7.21 16 37 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 38 H 0.14 1.35 6.30 -52.49 -0.33 1.02 16 39 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -36.96 349.45 -7.02 -43.98 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.94 Total: 4.44 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.01 Total: -1.22 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.31 Total: -40.51 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.63 Total: -27.24 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.96 -7.02 -43.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002226267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.510 kcal (2) G-P(sol) polarization free energy of solvation -36.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds