Wall clock time and date at job start Fri Apr 10 2020 17:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99970 * 2 1 4 4 C 1.50696 * 109.47175 * 293.95138 * 3 2 1 5 5 H 1.07992 * 120.00034 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99800 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99576 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00301 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47361 * 89.99549 * 8 6 4 10 10 H 1.48492 * 109.47187 * 210.00234 * 8 6 4 11 11 H 1.48506 * 109.46933 * 329.99640 * 8 6 4 12 12 C 1.46900 * 111.00031 * 123.95521 * 2 1 3 13 13 C 1.50703 * 109.47215 * 66.04580 * 12 2 1 14 14 O 1.21289 * 119.99869 * 359.97438 * 13 12 2 15 15 N 1.34778 * 119.99951 * 180.02562 * 13 12 2 16 16 C 1.39926 * 120.00074 * 185.27318 * 15 13 12 17 17 C 1.38882 * 120.06747 * 33.28455 * 16 15 13 18 18 C 1.38111 * 119.92705 * 180.02562 * 17 16 15 19 19 C 1.38277 * 120.07341 * 0.02562 * 18 17 16 20 20 N 1.48010 * 119.93383 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99775 * 0.02562 * 20 19 18 22 22 O 1.21806 * 120.00317 * 179.72335 * 20 19 18 23 23 C 1.38292 * 120.13957 * 0.27386 * 19 18 17 24 24 C 1.38116 * 120.06773 * 359.44652 * 23 19 18 25 25 H 1.08997 * 109.47423 * 296.04522 * 1 2 3 26 26 H 1.09003 * 109.46991 * 56.04598 * 1 2 3 27 27 H 1.09008 * 109.47304 * 176.04600 * 1 2 3 28 28 H 1.09001 * 109.47109 * 53.95698 * 3 2 1 29 29 H 1.09011 * 109.46967 * 173.95192 * 3 2 1 30 30 H 0.97001 * 119.99828 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47314 * 306.04832 * 12 2 1 32 32 H 1.08995 * 109.47505 * 186.04751 * 12 2 1 33 33 H 0.97000 * 120.00470 * 5.26738 * 15 13 12 34 34 H 1.08003 * 120.03454 * 0.02562 * 17 16 15 35 35 H 1.07998 * 119.95955 * 179.97438 * 18 17 16 36 36 H 1.07996 * 119.96338 * 179.73094 * 23 19 18 37 37 H 1.07998 * 120.03005 * 180.24926 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0268 3.3495 -1.5284 7 7 1.7135 3.9393 -2.6614 8 14 2.9999 4.2762 -0.2309 9 1 4.4523 4.0637 -0.4557 10 1 2.6917 5.7258 -0.3225 11 1 2.6292 3.7756 1.1172 12 6 1.9954 -0.7660 1.1376 13 6 1.6369 -2.2205 0.9728 14 8 1.0046 -2.5831 0.0034 15 7 2.0180 -3.1180 1.9032 16 6 1.7824 -4.4819 1.6975 17 6 1.8266 -5.0098 0.4137 18 6 1.5931 -6.3563 0.2139 19 6 1.3150 -7.1785 1.2903 20 7 1.0647 -8.6209 1.0726 21 8 1.1043 -9.0826 -0.0538 22 8 0.8246 -9.3473 2.0205 23 6 1.2642 -6.6547 2.5692 24 6 1.5025 -5.3102 2.7764 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0253 -0.0709 28 1 1.5611 1.9273 0.8310 29 1 3.0798 1.3443 0.1083 30 1 1.9875 4.8556 -2.8231 31 1 1.5610 -0.3873 2.0628 32 1 3.0796 -0.6611 1.1757 33 1 2.4557 -2.8186 2.7154 34 1 2.0433 -4.3680 -0.4275 35 1 1.6269 -6.7672 -0.7842 36 1 1.0425 -7.2987 3.4074 37 1 1.4666 -4.9026 3.7758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005913378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:31 Heat of formation + Delta-G solvation = 8.554732 kcal Electronic energy + Delta-G solvation = -22309.775189 eV Core-core repulsion = 18670.305273 eV Total energy + Delta-G solvation = -3639.469916 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.34493 -40.98363 -39.07058 -36.72299 -36.48535 -35.21996 -32.58855 -31.79016 -31.31320 -28.92333 -27.58014 -26.23813 -24.26575 -23.79339 -22.56871 -20.98551 -20.30937 -19.59951 -18.83791 -18.24574 -17.68677 -17.34121 -16.86292 -16.01515 -15.39882 -15.14336 -14.74535 -14.58362 -14.33984 -14.06064 -13.91583 -13.65296 -13.53604 -12.71830 -12.29698 -12.13326 -12.00727 -11.73814 -11.40127 -11.36395 -11.31138 -11.17791 -11.01155 -10.78193 -10.66216 -10.13086 -9.87736 -9.69987 -9.38836 -8.94559 -8.67131 -7.61301 -6.14079 -4.12781 -0.41494 0.59626 1.05889 1.22896 2.31128 2.47872 3.00501 3.18948 3.25441 3.27406 4.00802 4.14448 4.31406 4.34405 4.45318 4.60580 4.63280 4.87773 5.11742 5.16656 5.27882 5.29364 5.37012 5.42400 5.58501 5.72524 6.00699 6.07176 6.12065 6.28947 6.56869 6.70155 6.84345 6.85939 7.39728 7.46839 7.67447 7.74063 7.90777 8.52604 8.95591 9.45643 10.98912 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.042228 B = 0.002615 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.906122 B =10706.446747 C =11062.302570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.514 5.514 3 C 0.163 3.837 4 C -0.512 4.512 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.269 1.269 12 C 0.036 3.964 13 C 0.515 3.485 14 O -0.483 6.483 15 N -0.682 5.682 16 C 0.217 3.783 17 C -0.126 4.126 18 C -0.029 4.029 19 C -0.073 4.073 20 N 0.035 4.965 21 O -0.166 6.166 22 O -0.170 6.170 23 C -0.031 4.031 24 C -0.154 4.154 25 H 0.008 0.992 26 H 0.084 0.916 27 H 0.065 0.935 28 H -0.008 1.008 29 H 0.025 0.975 30 H 0.265 0.735 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.417 0.583 34 H 0.162 0.838 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 -17.480 14.744 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.239 5.239 3 C 0.038 3.962 4 C -0.550 4.550 5 H 0.101 0.899 6 C -0.133 4.133 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.194 1.194 12 C -0.096 4.096 13 C 0.303 3.697 14 O -0.353 6.353 15 N -0.328 5.328 16 C 0.119 3.881 17 C -0.147 4.147 18 C -0.049 4.049 19 C -0.157 4.157 20 N 0.552 4.448 21 O -0.381 6.381 22 O -0.384 6.384 23 C -0.051 4.051 24 C -0.176 4.176 25 H 0.027 0.973 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.009 0.991 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.254 0.746 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.173 0.827 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.813 -16.963 13.556 21.790 hybrid contribution 0.450 0.833 1.768 2.006 sum 2.263 -16.130 15.324 22.363 Atomic orbital electron populations 1.22435 0.87120 1.01566 1.00727 1.61729 1.08502 1.16355 1.37270 1.20250 0.94902 0.83233 0.97855 1.20978 1.36035 0.97265 1.00772 0.89912 1.24905 0.95778 0.97295 0.95321 1.69888 1.46545 1.13308 1.23790 0.86865 0.80875 0.79491 0.82490 1.20083 1.21092 1.19360 1.22011 1.02535 0.89194 0.95881 1.21398 0.78041 0.88593 0.81672 1.90723 1.35616 1.80120 1.28862 1.43986 1.60727 1.03765 1.24364 1.18177 0.91826 0.84043 0.94053 1.21315 1.01741 0.93951 0.97679 1.20963 0.92503 0.92427 0.99001 1.21066 1.16982 0.80769 0.96907 1.43584 0.97425 1.03397 1.00403 1.94547 1.55423 1.78387 1.09706 1.94520 1.51921 1.57427 1.34560 1.20787 0.93688 0.95373 0.95254 1.20900 1.04727 0.92451 0.99487 0.97329 0.89776 0.91616 0.99074 0.95658 0.92518 0.92271 0.87623 0.74623 0.82091 0.82589 0.82712 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.03 60.06 0.54 1.10 16 2 N -0.51 -10.02 4.49 -245.82 -1.10 -11.12 16 3 C 0.16 3.66 3.79 -4.98 -0.02 3.64 16 4 C -0.51 -14.04 9.01 -34.44 -0.31 -14.35 16 5 H 0.08 2.51 7.37 -52.49 -0.39 2.13 16 6 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 7 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 8 Si 0.88 20.35 27.47 -169.99 -4.67 15.68 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 12 C 0.04 0.48 5.45 -4.97 -0.03 0.45 16 13 C 0.51 6.44 7.29 -10.98 -0.08 6.36 16 14 O -0.48 -7.87 12.00 5.55 0.07 -7.80 16 15 N -0.68 -5.57 5.34 -9.86 -0.05 -5.63 16 16 C 0.22 1.90 6.28 -83.69 -0.53 1.37 16 17 C -0.13 -1.29 8.66 -39.39 -0.34 -1.63 16 18 C -0.03 -0.29 9.55 -39.61 -0.38 -0.66 16 19 C -0.07 -0.74 6.85 -79.92 -0.55 -1.29 16 20 N 0.03 0.43 4.45 33.98 0.15 0.58 16 21 O -0.17 -2.21 18.44 -29.46 -0.54 -2.75 16 22 O -0.17 -2.16 18.44 -29.46 -0.54 -2.70 16 23 C -0.03 -0.24 9.55 -39.61 -0.38 -0.62 16 24 C -0.15 -1.02 9.96 -39.39 -0.39 -1.42 16 25 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 26 H 0.08 1.80 6.76 -51.93 -0.35 1.45 16 27 H 0.07 1.19 5.88 -51.92 -0.31 0.88 16 28 H -0.01 -0.19 7.18 -51.93 -0.37 -0.56 16 29 H 0.03 0.55 7.36 -51.92 -0.38 0.17 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.11 1.23 7.93 -51.93 -0.41 0.82 16 33 H 0.42 1.84 8.82 -40.82 -0.36 1.48 16 34 H 0.16 1.89 6.42 -52.48 -0.34 1.55 16 35 H 0.16 1.39 7.60 -52.49 -0.40 0.99 16 36 H 0.16 0.94 7.60 -52.49 -0.40 0.54 16 37 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 321.79 15.07 4.85 4.85 Total: -1.00 -33.40 321.79 -7.77 -41.17 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.14 Total: -1.04 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -2.55 Total: -5.20 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: -0.23 Total: -42.19 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -1.02 Total: -13.26 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.40 -7.77 -41.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005913378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.723 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds