Wall clock time and date at job start Fri Apr 10 2020 17:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99970 * 2 1 4 4 C 1.50696 * 109.47175 * 293.95138 * 3 2 1 5 5 H 1.07992 * 120.00034 * 0.02562 * 4 3 2 6 6 C 1.37883 * 119.99800 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99576 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00301 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47361 * 89.99549 * 8 6 4 10 10 H 1.48492 * 109.47187 * 210.00234 * 8 6 4 11 11 H 1.48506 * 109.46933 * 329.99640 * 8 6 4 12 12 C 1.46900 * 111.00031 * 123.95521 * 2 1 3 13 13 C 1.50703 * 109.47215 * 66.04580 * 12 2 1 14 14 O 1.21289 * 119.99869 * 359.97438 * 13 12 2 15 15 N 1.34778 * 119.99951 * 180.02562 * 13 12 2 16 16 C 1.39926 * 120.00074 * 185.27318 * 15 13 12 17 17 C 1.38882 * 120.06747 * 33.28455 * 16 15 13 18 18 C 1.38111 * 119.92705 * 180.02562 * 17 16 15 19 19 C 1.38277 * 120.07341 * 0.02562 * 18 17 16 20 20 N 1.48010 * 119.93383 * 179.97438 * 19 18 17 21 21 O 1.21803 * 119.99775 * 0.02562 * 20 19 18 22 22 O 1.21806 * 120.00317 * 179.72335 * 20 19 18 23 23 C 1.38292 * 120.13957 * 0.27386 * 19 18 17 24 24 C 1.38116 * 120.06773 * 359.44652 * 23 19 18 25 25 H 1.08997 * 109.47423 * 296.04522 * 1 2 3 26 26 H 1.09003 * 109.46991 * 56.04598 * 1 2 3 27 27 H 1.09008 * 109.47304 * 176.04600 * 1 2 3 28 28 H 1.09001 * 109.47109 * 53.95698 * 3 2 1 29 29 H 1.09011 * 109.46967 * 173.95192 * 3 2 1 30 30 H 0.97001 * 119.99828 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47314 * 306.04832 * 12 2 1 32 32 H 1.08995 * 109.47505 * 186.04751 * 12 2 1 33 33 H 0.97000 * 120.00470 * 5.26738 * 15 13 12 34 34 H 1.08003 * 120.03454 * 0.02562 * 17 16 15 35 35 H 1.07998 * 119.95955 * 179.97438 * 18 17 16 36 36 H 1.07996 * 119.96338 * 179.73094 * 23 19 18 37 37 H 1.07998 * 120.03005 * 180.24926 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0484 6 6 2.0268 3.3495 -1.5284 7 7 1.7135 3.9393 -2.6614 8 14 2.9999 4.2762 -0.2309 9 1 4.4523 4.0637 -0.4557 10 1 2.6917 5.7258 -0.3225 11 1 2.6292 3.7756 1.1172 12 6 1.9954 -0.7660 1.1376 13 6 1.6369 -2.2205 0.9728 14 8 1.0046 -2.5831 0.0034 15 7 2.0180 -3.1180 1.9032 16 6 1.7824 -4.4819 1.6975 17 6 1.8266 -5.0098 0.4137 18 6 1.5931 -6.3563 0.2139 19 6 1.3150 -7.1785 1.2903 20 7 1.0647 -8.6209 1.0726 21 8 1.1043 -9.0826 -0.0538 22 8 0.8246 -9.3473 2.0205 23 6 1.2642 -6.6547 2.5692 24 6 1.5025 -5.3102 2.7764 25 1 -0.3634 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0253 -0.0709 28 1 1.5611 1.9273 0.8310 29 1 3.0798 1.3443 0.1083 30 1 1.9875 4.8556 -2.8231 31 1 1.5610 -0.3873 2.0628 32 1 3.0796 -0.6611 1.1757 33 1 2.4557 -2.8186 2.7154 34 1 2.0433 -4.3680 -0.4275 35 1 1.6269 -6.7672 -0.7842 36 1 1.0425 -7.2987 3.4074 37 1 1.4666 -4.9026 3.7758 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005913378.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:31 Heat of formation + Delta-G solvation = -15.529861 kcal Electronic energy + Delta-G solvation = -22310.819575 eV Core-core repulsion = 18670.305273 eV Total energy + Delta-G solvation = -3640.514302 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.24171 -41.84970 -39.96250 -37.87853 -37.66835 -36.12906 -34.61613 -32.47031 -32.19448 -30.44209 -29.02693 -27.23440 -25.80578 -24.52990 -23.51888 -22.31739 -21.49847 -20.41762 -19.75817 -19.19981 -18.81194 -18.59638 -18.21357 -16.97133 -16.51483 -16.13363 -16.03252 -15.92985 -15.45991 -15.35359 -14.77990 -14.49887 -14.46157 -14.35996 -13.82056 -13.50711 -12.92427 -12.82589 -12.69250 -12.66109 -12.41416 -12.34966 -12.30394 -12.30186 -11.91190 -11.85957 -11.53136 -10.93005 -10.77034 -10.42955 -9.70658 -9.05985 -8.26372 -6.31575 -1.27249 -0.05562 0.19670 0.39900 1.38001 1.39671 1.41007 1.50867 1.67263 2.29728 2.36880 3.06820 3.22336 3.34742 3.48600 3.56250 3.79824 3.87390 4.22949 4.26341 4.38366 4.42186 4.48909 4.60373 4.65872 4.74276 4.89086 4.91413 4.98624 5.04022 5.19363 5.23615 5.51885 5.52542 5.90539 6.15050 6.29783 6.49132 6.62167 6.76038 6.98744 7.31901 8.90823 Molecular weight = 293.12amu Principal moments of inertia in cm(-1) A = 0.042228 B = 0.002615 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.906122 B =10706.446747 C =11062.302570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.173 3.827 4 C -0.522 4.522 5 H 0.028 0.972 6 C 0.001 3.999 7 N -0.953 5.953 8 Si 0.956 3.044 9 H -0.263 1.263 10 H -0.288 1.288 11 H -0.238 1.238 12 C 0.034 3.966 13 C 0.520 3.480 14 O -0.530 6.530 15 N -0.657 5.657 16 C 0.212 3.788 17 C -0.140 4.140 18 C -0.036 4.036 19 C -0.086 4.086 20 N 0.036 4.964 21 O -0.207 6.207 22 O -0.166 6.166 23 C -0.024 4.024 24 C -0.129 4.129 25 H 0.027 0.973 26 H 0.041 0.959 27 H 0.072 0.928 28 H 0.001 0.999 29 H 0.043 0.957 30 H 0.266 0.734 31 H 0.094 0.906 32 H 0.131 0.869 33 H 0.439 0.561 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.179 0.821 37 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.377 -17.428 19.517 26.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.268 5.268 3 C 0.047 3.953 4 C -0.560 4.560 5 H 0.047 0.953 6 C -0.196 4.196 7 N -0.594 5.594 8 Si 0.778 3.222 9 H -0.188 1.188 10 H -0.214 1.214 11 H -0.161 1.161 12 C -0.097 4.097 13 C 0.309 3.691 14 O -0.404 6.404 15 N -0.305 5.305 16 C 0.114 3.886 17 C -0.161 4.161 18 C -0.056 4.056 19 C -0.170 4.170 20 N 0.549 4.451 21 O -0.413 6.413 22 O -0.383 6.383 23 C -0.044 4.044 24 C -0.150 4.150 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.281 0.719 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.196 0.804 37 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.234 -16.971 18.323 25.184 hybrid contribution -0.032 0.748 0.296 0.805 sum 3.202 -16.223 18.620 24.902 Atomic orbital electron populations 1.22241 0.87438 1.01322 0.99746 1.61464 1.08537 1.15303 1.41471 1.20001 0.95784 0.84648 0.94874 1.21288 1.35048 0.97611 1.02076 0.95340 1.25992 0.97139 0.98452 0.97972 1.70085 1.48693 1.13887 1.26743 0.85599 0.79183 0.77234 0.80166 1.18812 1.21407 1.16118 1.22137 1.03955 0.88799 0.94834 1.21222 0.77500 0.88832 0.81556 1.90732 1.38000 1.80707 1.30956 1.43589 1.59785 1.02943 1.24187 1.18305 0.91878 0.84339 0.94035 1.21184 1.02942 0.93742 0.98240 1.20924 0.92956 0.92492 0.99210 1.21254 1.18318 0.79311 0.98159 1.43886 0.96923 1.04288 1.00045 1.94550 1.57444 1.79165 1.10170 1.94483 1.51283 1.58207 1.34363 1.21169 0.92397 0.96194 0.94637 1.21273 1.01897 0.91244 1.00555 0.95452 0.93972 0.90965 0.98089 0.93951 0.92490 0.88801 0.85167 0.71913 0.84169 0.82974 0.80355 0.78832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.03 127.69 1.15 2.69 16 2 N -0.54 -20.50 4.49 -931.65 -4.18 -24.69 16 3 C 0.17 7.47 3.79 85.56 0.32 7.80 16 4 C -0.52 -29.37 9.01 25.60 0.23 -29.14 16 5 H 0.03 1.85 7.37 -2.91 -0.02 1.83 16 6 C 0.00 0.06 5.47 84.66 0.46 0.53 16 7 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 8 Si 0.96 41.11 27.47 68.60 1.88 42.99 16 9 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.24 -9.00 6.54 99.48 0.65 -8.35 16 12 C 0.03 0.78 5.45 85.56 0.47 1.25 16 13 C 0.52 11.66 7.29 87.66 0.64 12.30 16 14 O -0.53 -17.02 12.00 -3.06 -0.04 -17.06 16 15 N -0.66 -8.10 5.34 -303.49 -1.62 -9.72 16 16 C 0.21 3.05 6.28 38.15 0.24 3.29 16 17 C -0.14 -2.79 8.66 22.39 0.19 -2.59 16 18 C -0.04 -0.71 9.55 22.25 0.21 -0.50 16 19 C -0.09 -1.65 6.85 36.40 0.25 -1.40 16 20 N 0.04 0.87 4.45 -46.41 -0.21 0.67 16 21 O -0.21 -5.75 18.44 18.88 0.35 -5.40 16 22 O -0.17 -4.01 18.44 18.88 0.35 -3.66 16 23 C -0.02 -0.29 9.55 22.25 0.21 -0.08 16 24 C -0.13 -1.09 9.96 22.39 0.22 -0.87 16 25 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.04 1.90 6.76 -2.39 -0.02 1.89 16 27 H 0.07 2.62 5.88 -2.38 -0.01 2.61 16 28 H 0.00 0.06 7.18 -2.39 -0.02 0.04 16 29 H 0.04 1.69 7.36 -2.38 -0.02 1.68 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.09 1.62 8.12 -2.38 -0.02 1.60 16 32 H 0.13 2.41 7.93 -2.39 -0.02 2.39 16 33 H 0.44 1.41 8.82 -92.71 -0.82 0.59 16 34 H 0.14 3.43 6.42 -2.91 -0.02 3.41 16 35 H 0.15 2.98 7.60 -2.91 -0.02 2.95 16 36 H 0.18 1.36 7.60 -2.91 -0.02 1.34 16 37 H 0.19 -0.02 8.06 -2.91 -0.02 -0.04 16 Total: -1.00 -78.53 321.79 1.68 -76.85 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: 0.25 Total: 5.59 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 4.61 Total: -6.72 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -5.71 Total: -92.58 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: 0.66 Total: -26.13 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.88 Total: 42.99 kcal Total: -78.53 1.68 -76.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005913378.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.315 kcal (2) G-P(sol) polarization free energy of solvation -78.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds