Wall clock time and date at job start Fri Apr 10 2020 17:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46902 * 110.99989 * 2 1 4 4 C 1.46904 * 111.00103 * 123.95021 * 2 1 3 5 5 C 1.53001 * 109.47010 * 66.04742 * 4 2 1 6 6 N 1.46501 * 109.46884 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99766 * 180.02562 * 6 5 4 8 8 S 1.71202 * 119.99965 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99875 * 180.02562 * 7 6 5 10 10 C 1.39148 * 119.99799 * 185.74192 * 9 7 6 11 11 C 1.39507 * 119.83665 * 40.96913 * 10 9 7 12 12 C 1.36357 * 120.16981 * 180.29373 * 11 10 9 13 13 C 1.40887 * 119.82336 * 359.46106 * 12 11 10 14 14 C 1.41136 * 120.15579 * 180.25392 * 13 12 11 15 15 H 1.07999 * 119.99785 * 205.37583 * 14 13 12 16 16 C 1.39889 * 120.00438 * 25.36973 * 14 13 12 17 17 N 1.30887 * 119.99608 * 16.82776 * 16 14 13 18 18 Si 1.86795 * 120.00051 * 196.82007 * 16 14 13 19 19 H 1.48500 * 109.47342 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47135 * 120.00531 * 18 16 14 21 21 H 1.48498 * 109.47154 * 240.00189 * 18 16 14 22 22 C 1.40876 * 119.68062 * 0.53550 * 13 12 11 23 23 C 1.36363 * 119.82775 * 359.73542 * 22 13 12 24 24 H 1.08995 * 109.47591 * 296.04764 * 1 2 3 25 25 H 1.08996 * 109.47551 * 56.04890 * 1 2 3 26 26 H 1.09002 * 109.47083 * 176.04580 * 1 2 3 27 27 H 1.09000 * 109.47649 * 183.95395 * 3 2 1 28 28 H 1.09003 * 109.46896 * 303.95615 * 3 2 1 29 29 H 1.09006 * 109.47151 * 63.94803 * 3 2 1 30 30 H 1.08997 * 109.46959 * 306.04876 * 4 2 1 31 31 H 1.09004 * 109.47226 * 186.04831 * 4 2 1 32 32 H 1.09004 * 109.46522 * 60.00337 * 5 4 2 33 33 H 1.08997 * 109.47370 * 300.00403 * 5 4 2 34 34 H 0.96998 * 119.99867 * 0.02562 * 6 5 4 35 35 H 0.97000 * 120.00435 * 5.74821 * 9 7 6 36 36 H 1.07999 * 119.91614 * 0.02562 * 11 10 9 37 37 H 1.07991 * 120.08721 * 179.72519 * 12 11 10 38 38 H 0.97003 * 119.99723 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.08340 * 179.71227 * 22 13 12 40 40 H 1.07996 * 119.91064 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2426 0.9705 6 7 2.1570 -3.0065 2.1047 7 6 1.9567 -4.3376 2.1714 8 16 1.0874 -5.1356 0.9310 9 7 2.4397 -5.0403 3.2151 10 6 2.3380 -6.4280 3.2262 11 6 2.5744 -7.1506 2.0565 12 6 2.4708 -8.5103 2.0583 13 6 2.1352 -9.1859 3.2482 14 6 2.0313 -10.5933 3.2593 15 1 1.4062 -11.0829 3.9913 16 6 2.7379 -11.3543 2.3219 17 7 3.7319 -10.8188 1.6599 18 14 2.2629 -13.1346 2.0153 19 1 1.1145 -13.4973 2.8842 20 1 1.8791 -13.3063 0.5910 21 1 3.4171 -14.0156 2.3265 22 6 1.8980 -8.4493 4.4254 23 6 1.9999 -7.0896 4.4069 24 1 -0.3634 0.4512 0.9232 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8524 29 1 1.7042 1.8724 0.9233 30 1 1.5610 -0.3872 2.0628 31 1 3.0797 -0.6610 1.1757 32 1 2.0659 -2.6213 0.0453 33 1 0.5472 -2.3475 0.9324 34 1 2.6492 -2.5542 2.8076 35 1 2.8582 -4.5787 3.9586 36 1 2.8358 -6.6316 1.1463 37 1 2.6496 -9.0680 1.1510 38 1 4.2216 -11.3463 1.0097 39 1 1.6358 -8.9602 5.3401 40 1 1.8180 -6.5236 5.3085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007369108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:36 Heat of formation + Delta-G solvation = 51.066981 kcal Electronic energy + Delta-G solvation = -20227.646456 eV Core-core repulsion = 17168.605975 eV Total energy + Delta-G solvation = -3059.040481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.25833 -38.17800 -36.95444 -34.92878 -33.16228 -30.11251 -29.52165 -28.64316 -27.92038 -25.33019 -24.09245 -23.42660 -21.61903 -21.17061 -20.44110 -18.02387 -17.34164 -17.31770 -16.08340 -15.94321 -15.26612 -15.16714 -14.89733 -14.67876 -14.13147 -13.94249 -13.65997 -12.85724 -12.72521 -12.66140 -12.16799 -12.09888 -12.05859 -11.83776 -11.81465 -11.46426 -11.23506 -11.11722 -10.86213 -10.56019 -10.51121 -9.84030 -9.54515 -9.20244 -9.00871 -8.77007 -7.69453 -7.43121 -7.00508 -6.79666 -6.26298 -4.33713 1.72278 2.41466 2.81660 2.96844 3.09107 3.14136 3.15869 3.26400 3.71250 3.92719 4.02966 4.51454 4.62455 4.70880 4.85690 4.98792 5.09824 5.25815 5.26601 5.49213 5.59697 5.70841 5.76204 5.85731 6.08248 6.25280 6.38295 6.57401 6.60197 6.62117 6.99688 7.03516 7.12028 7.22360 7.31035 7.60592 7.68015 7.94370 8.06922 8.20643 8.28209 8.64675 8.86929 8.97527 10.14460 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.036855 B = 0.002856 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.554466 B = 9800.006423 C =10154.646074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.043 3.957 5 C 0.133 3.867 6 N -0.701 5.701 7 C 0.544 3.456 8 S -0.639 6.639 9 N -0.591 5.591 10 C -0.037 4.037 11 C -0.038 4.038 12 C -0.163 4.163 13 C 0.119 3.881 14 C -0.450 4.450 15 H 0.080 0.920 16 C 0.074 3.926 17 N -0.783 5.783 18 Si 0.909 3.091 19 H -0.260 1.260 20 H -0.270 1.270 21 H -0.274 1.274 22 C -0.226 4.226 23 C -0.082 4.082 24 H 0.026 0.974 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.389 0.611 35 H 0.389 0.611 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.282 0.718 39 H 0.096 0.904 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.118 18.694 0.802 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.264 5.264 3 C -0.123 4.123 4 C -0.086 4.086 5 C 0.009 3.991 6 N -0.333 5.333 7 C 0.186 3.814 8 S -0.511 6.511 9 N -0.210 5.210 10 C -0.129 4.129 11 C -0.060 4.060 12 C -0.183 4.183 13 C 0.116 3.884 14 C -0.479 4.479 15 H 0.098 0.902 16 C -0.145 4.145 17 N -0.407 5.407 18 Si 0.734 3.266 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.200 1.200 22 C -0.247 4.247 23 C -0.102 4.102 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.225 0.775 35 H 0.225 0.775 36 H 0.129 0.871 37 H 0.139 0.861 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.412 17.872 -0.748 17.892 hybrid contribution 0.456 0.570 1.974 2.105 sum 0.044 18.442 1.226 18.483 Atomic orbital electron populations 1.22535 0.86712 1.03341 1.00556 1.61801 1.08574 1.13861 1.42213 1.22399 1.00882 0.88356 1.00641 1.22290 1.00739 0.93464 0.92120 1.21491 1.00720 0.88164 0.88766 1.44672 1.57398 1.05041 1.26217 1.22321 0.84738 0.83667 0.90713 1.93303 1.51656 1.72733 1.33371 1.41982 1.53544 1.07307 1.18170 1.16889 1.21246 0.77552 0.97258 1.20509 0.95923 0.94164 0.95380 1.20880 1.06943 0.91986 0.98510 1.17728 0.87087 0.93237 0.90341 1.19656 1.23628 0.91570 1.13029 0.90190 1.25972 0.93211 1.01221 0.94101 1.69858 1.13515 1.38426 1.18936 0.86240 0.79619 0.81422 0.79360 1.18318 1.19529 1.19980 1.20470 1.13936 0.92597 0.97662 1.19965 1.00634 0.94866 0.94756 0.95559 0.91072 0.90250 0.91216 0.90993 0.95658 0.94345 0.90200 0.88923 0.89856 0.77545 0.77530 0.87123 0.86138 0.90706 0.88600 0.89525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.06 0.56 0.69 16 2 N -0.54 -4.71 5.02 -251.26 -1.26 -5.97 16 3 C 0.03 0.17 9.57 60.07 0.57 0.74 16 4 C 0.04 0.36 5.07 -3.82 -0.02 0.34 16 5 C 0.13 1.52 5.05 -4.04 -0.02 1.50 16 6 N -0.70 -8.40 5.56 -62.03 -0.34 -8.74 16 7 C 0.54 9.33 7.73 -86.92 -0.67 8.66 16 8 S -0.64 -14.22 24.97 -107.50 -2.68 -16.90 16 9 N -0.59 -10.07 5.29 -11.28 -0.06 -10.13 16 10 C -0.04 -0.80 5.94 -83.59 -0.50 -1.30 16 11 C -0.04 -0.94 7.76 -39.79 -0.31 -1.25 16 12 C -0.16 -4.35 8.63 -39.26 -0.34 -4.69 16 13 C 0.12 3.17 5.57 -106.80 -0.59 2.58 16 14 C -0.45 -11.83 9.04 -37.87 -0.34 -12.18 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 16 C 0.07 1.85 5.15 -17.34 -0.09 1.76 16 17 N -0.78 -20.15 10.95 55.54 0.61 -19.54 16 18 Si 0.91 18.63 29.59 -169.99 -5.03 13.60 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 22 C -0.23 -5.45 9.74 -39.26 -0.38 -5.83 16 23 C -0.08 -1.77 9.90 -39.78 -0.39 -2.17 16 24 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 25 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 26 H 0.08 0.72 6.47 -51.93 -0.34 0.39 16 27 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 31 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 32 H 0.09 1.26 7.99 -51.93 -0.41 0.85 16 33 H 0.08 1.07 6.40 -51.93 -0.33 0.74 16 34 H 0.39 3.29 8.49 -40.82 -0.35 2.94 16 35 H 0.39 5.02 8.84 -40.82 -0.36 4.66 16 36 H 0.11 2.77 6.16 -47.21 -0.29 2.48 16 37 H 0.12 3.37 6.18 -52.49 -0.32 3.05 16 38 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 39 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 40 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -31.35 340.85 -11.91 -43.26 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.75 Total: 10.43 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -2.52 Total: -11.14 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -1.06 Total: -44.39 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: -14.22 SS G_CDS: -2.68 Total: -16.90 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.35 -11.91 -43.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007369108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.331 kcal (2) G-P(sol) polarization free energy of solvation -31.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds