Wall clock time and date at job start Fri Apr 10 2020 17:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46902 * 110.99989 * 2 1 4 4 C 1.46904 * 111.00103 * 123.95021 * 2 1 3 5 5 C 1.53001 * 109.47010 * 66.04742 * 4 2 1 6 6 N 1.46501 * 109.46884 * 179.97438 * 5 4 2 7 7 C 1.34776 * 119.99766 * 180.02562 * 6 5 4 8 8 S 1.71202 * 119.99965 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99875 * 180.02562 * 7 6 5 10 10 C 1.39148 * 119.99799 * 185.74192 * 9 7 6 11 11 C 1.39507 * 119.83665 * 40.96913 * 10 9 7 12 12 C 1.36357 * 120.16981 * 180.29373 * 11 10 9 13 13 C 1.40887 * 119.82336 * 359.46106 * 12 11 10 14 14 C 1.41136 * 120.15579 * 180.25392 * 13 12 11 15 15 H 1.07999 * 119.99785 * 205.37583 * 14 13 12 16 16 C 1.39889 * 120.00438 * 25.36973 * 14 13 12 17 17 N 1.30887 * 119.99608 * 16.82776 * 16 14 13 18 18 Si 1.86795 * 120.00051 * 196.82007 * 16 14 13 19 19 H 1.48500 * 109.47342 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.47135 * 120.00531 * 18 16 14 21 21 H 1.48498 * 109.47154 * 240.00189 * 18 16 14 22 22 C 1.40876 * 119.68062 * 0.53550 * 13 12 11 23 23 C 1.36363 * 119.82775 * 359.73542 * 22 13 12 24 24 H 1.08995 * 109.47591 * 296.04764 * 1 2 3 25 25 H 1.08996 * 109.47551 * 56.04890 * 1 2 3 26 26 H 1.09002 * 109.47083 * 176.04580 * 1 2 3 27 27 H 1.09000 * 109.47649 * 183.95395 * 3 2 1 28 28 H 1.09003 * 109.46896 * 303.95615 * 3 2 1 29 29 H 1.09006 * 109.47151 * 63.94803 * 3 2 1 30 30 H 1.08997 * 109.46959 * 306.04876 * 4 2 1 31 31 H 1.09004 * 109.47226 * 186.04831 * 4 2 1 32 32 H 1.09004 * 109.46522 * 60.00337 * 5 4 2 33 33 H 1.08997 * 109.47370 * 300.00403 * 5 4 2 34 34 H 0.96998 * 119.99867 * 0.02562 * 6 5 4 35 35 H 0.97000 * 120.00435 * 5.74821 * 9 7 6 36 36 H 1.07999 * 119.91614 * 0.02562 * 11 10 9 37 37 H 1.07991 * 120.08721 * 179.72519 * 12 11 10 38 38 H 0.97003 * 119.99723 * 180.02562 * 17 16 14 39 39 H 1.08000 * 120.08340 * 179.71227 * 22 13 12 40 40 H 1.07996 * 119.91064 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2426 0.9705 6 7 2.1570 -3.0065 2.1047 7 6 1.9567 -4.3376 2.1714 8 16 1.0874 -5.1356 0.9310 9 7 2.4397 -5.0403 3.2151 10 6 2.3380 -6.4280 3.2262 11 6 2.5744 -7.1506 2.0565 12 6 2.4708 -8.5103 2.0583 13 6 2.1352 -9.1859 3.2482 14 6 2.0313 -10.5933 3.2593 15 1 1.4062 -11.0829 3.9913 16 6 2.7379 -11.3543 2.3219 17 7 3.7319 -10.8188 1.6599 18 14 2.2629 -13.1346 2.0153 19 1 1.1145 -13.4973 2.8842 20 1 1.8791 -13.3063 0.5910 21 1 3.4171 -14.0156 2.3265 22 6 1.8980 -8.4493 4.4254 23 6 1.9999 -7.0896 4.4069 24 1 -0.3634 0.4512 0.9232 25 1 -0.3634 0.5739 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0827 1.3433 -0.0709 28 1 1.5897 1.9163 -0.8524 29 1 1.7042 1.8724 0.9233 30 1 1.5610 -0.3872 2.0628 31 1 3.0797 -0.6610 1.1757 32 1 2.0659 -2.6213 0.0453 33 1 0.5472 -2.3475 0.9324 34 1 2.6492 -2.5542 2.8076 35 1 2.8582 -4.5787 3.9586 36 1 2.8358 -6.6316 1.1463 37 1 2.6496 -9.0680 1.1510 38 1 4.2216 -11.3463 1.0097 39 1 1.6358 -8.9602 5.3401 40 1 1.8180 -6.5236 5.3085 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007369108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:36 Heat of formation + Delta-G solvation = 30.304759 kcal Electronic energy + Delta-G solvation = -20228.546774 eV Core-core repulsion = 17168.605975 eV Total energy + Delta-G solvation = -3059.940799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.75632 -39.34112 -38.23671 -36.39837 -34.89053 -31.48471 -31.37876 -30.09217 -28.50641 -26.92980 -25.32227 -24.75383 -22.98179 -22.67512 -21.93455 -19.45840 -19.21538 -18.79774 -17.24100 -16.94059 -16.83430 -16.49870 -15.86883 -15.76052 -15.69736 -15.15798 -14.96107 -14.50808 -14.10560 -13.92744 -13.63838 -13.30595 -13.20423 -12.99494 -12.77956 -12.73270 -12.59888 -12.49859 -12.35537 -12.17618 -11.98747 -11.65583 -11.37336 -11.03437 -10.49056 -9.56166 -9.37965 -9.17656 -8.80546 -8.64023 -8.06710 -6.28787 0.19281 0.92967 1.10893 1.26426 1.40171 1.52175 1.55526 1.62740 2.21720 2.63055 2.75731 3.14314 3.73169 3.78227 3.97948 4.27367 4.37327 4.41401 4.48960 4.54310 4.63856 4.67026 4.77144 4.84382 4.87866 5.03817 5.06843 5.10291 5.14104 5.19280 5.36491 5.45803 5.73115 5.80992 5.96761 6.00676 6.03384 6.13781 6.22913 6.37497 6.59242 6.72417 6.93941 7.05817 8.32188 Molecular weight = 293.13amu Principal moments of inertia in cm(-1) A = 0.036855 B = 0.002856 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.554466 B = 9800.006423 C =10154.646074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.560 5.560 3 C 0.026 3.974 4 C 0.054 3.946 5 C 0.135 3.865 6 N -0.663 5.663 7 C 0.573 3.427 8 S -0.740 6.740 9 N -0.580 5.580 10 C -0.020 4.020 11 C -0.044 4.044 12 C -0.189 4.189 13 C 0.089 3.911 14 C -0.487 4.487 15 H 0.081 0.919 16 C 0.032 3.968 17 N -0.818 5.818 18 Si 0.982 3.018 19 H -0.255 1.255 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.238 4.238 23 C -0.075 4.075 24 H 0.034 0.966 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.056 0.944 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.417 0.583 35 H 0.418 0.582 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.288 0.712 39 H 0.109 0.891 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.280 21.100 2.691 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.285 5.285 3 C -0.121 4.121 4 C -0.075 4.075 5 C 0.011 3.989 6 N -0.294 5.294 7 C 0.210 3.790 8 S -0.613 6.613 9 N -0.203 5.203 10 C -0.114 4.114 11 C -0.066 4.066 12 C -0.210 4.210 13 C 0.086 3.914 14 C -0.516 4.516 15 H 0.099 0.901 16 C -0.184 4.184 17 N -0.443 5.443 18 Si 0.803 3.197 19 H -0.179 1.179 20 H -0.194 1.194 21 H -0.187 1.187 22 C -0.259 4.259 23 C -0.095 4.095 24 H 0.053 0.947 25 H 0.097 0.903 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.257 0.743 35 H 0.258 0.742 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.128 0.872 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.020 20.374 1.185 20.408 hybrid contribution 0.355 0.143 1.398 1.449 sum 0.375 20.517 2.583 20.682 Atomic orbital electron populations 1.22505 0.86668 1.02470 1.01392 1.61777 1.08849 1.15283 1.42595 1.22436 1.01223 0.87102 1.01385 1.22192 1.01774 0.90687 0.92853 1.21526 0.99775 0.90199 0.87388 1.44545 1.55162 1.03044 1.26676 1.21658 0.83490 0.85034 0.88835 1.93633 1.55932 1.74608 1.37143 1.41579 1.53939 1.05681 1.19058 1.16816 1.18835 0.79578 0.96195 1.20506 0.96187 0.93639 0.96275 1.20748 1.09330 0.92917 0.98044 1.18049 0.88159 0.94037 0.91171 1.19900 1.25021 0.92064 1.14598 0.90064 1.26832 0.92636 1.05559 0.93365 1.69919 1.14488 1.40270 1.19649 0.85153 0.79567 0.75962 0.79020 1.17873 1.19402 1.18676 1.20726 1.13967 0.93872 0.97302 1.20308 0.98768 0.94286 0.96159 0.94700 0.90294 0.91978 0.90580 0.90483 0.94720 0.92608 0.88619 0.91128 0.91092 0.74317 0.74160 0.88131 0.88804 0.90103 0.87244 0.85046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.32 127.69 1.19 1.45 16 2 N -0.56 -8.50 5.02 -948.84 -4.76 -13.26 16 3 C 0.03 0.27 9.57 127.69 1.22 1.49 16 4 C 0.05 0.72 5.07 86.30 0.44 1.16 16 5 C 0.14 2.85 5.05 86.38 0.44 3.29 16 6 N -0.66 -13.78 5.56 -350.16 -1.95 -15.73 16 7 C 0.57 18.53 7.73 179.06 1.38 19.92 16 8 S -0.74 -33.62 24.97 -56.49 -1.41 -35.03 16 9 N -0.58 -18.01 5.29 -189.60 -1.00 -19.02 16 10 C -0.02 -0.86 5.94 38.59 0.23 -0.64 16 11 C -0.04 -2.25 7.76 22.14 0.17 -2.07 16 12 C -0.19 -10.64 8.63 22.48 0.19 -10.45 16 13 C 0.09 4.88 5.57 -21.27 -0.12 4.76 16 14 C -0.49 -26.54 9.04 23.38 0.21 -26.33 16 15 H 0.08 4.22 7.90 -2.91 -0.02 4.20 16 16 C 0.03 1.63 5.15 85.23 0.44 2.07 16 17 N -0.82 -43.95 10.95 21.82 0.24 -43.71 16 18 Si 0.98 39.09 29.59 68.60 2.03 41.12 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 22 C -0.24 -11.39 9.74 22.48 0.22 -11.17 16 23 C -0.07 -3.08 9.90 22.14 0.22 -2.86 16 24 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 26 H 0.06 1.11 6.47 -2.39 -0.02 1.10 16 27 H 0.08 0.69 8.12 -2.39 -0.02 0.67 16 28 H 0.08 0.72 8.12 -2.39 -0.02 0.70 16 29 H 0.03 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.06 0.60 8.12 -2.39 -0.02 0.58 16 31 H 0.10 1.03 8.06 -2.38 -0.02 1.01 16 32 H 0.07 1.89 7.99 -2.38 -0.02 1.87 16 33 H 0.07 1.76 6.40 -2.39 -0.02 1.75 16 34 H 0.42 4.94 8.49 -92.71 -0.79 4.15 16 35 H 0.42 8.73 8.84 -92.71 -0.82 7.91 16 36 H 0.10 5.24 6.16 -6.26 -0.04 5.20 16 37 H 0.09 5.66 6.18 -2.92 -0.02 5.64 16 38 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 39 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -73.24 340.85 -1.19 -74.43 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: -0.57 Total: 30.57 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: 6.24 Total: -19.38 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -7.47 Total: -91.71 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Atomic # 16 Polarization: -33.62 SS G_CDS: -1.41 Total: -35.03 kcal Total: -73.24 -1.19 -74.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007369108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.732 kcal (2) G-P(sol) polarization free energy of solvation -73.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds