Wall clock time and date at job start Fri Apr 10 2020 17:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99950 * 2 1 4 4 C 1.38757 * 120.05224 * 359.72486 * 3 2 1 5 5 C 1.38125 * 119.94066 * 179.69818 * 4 3 2 6 6 C 1.38282 * 120.05589 * 0.60102 * 5 4 3 7 7 C 1.38245 * 120.11247 * 359.67331 * 6 5 4 8 8 C 1.50702 * 119.97433 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47259 * 270.02361 * 8 7 6 10 10 O 1.21294 * 119.99647 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00396 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00402 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99898 * 11.51082 * 12 11 9 14 14 C 1.38946 * 120.00119 * 191.50257 * 12 11 9 15 15 N 1.31414 * 119.99878 * 21.40010 * 14 12 11 16 16 Si 1.86801 * 120.00178 * 201.38489 * 14 12 11 17 17 H 1.48507 * 109.46606 * 84.99283 * 16 14 12 18 18 H 1.48495 * 109.47314 * 204.98923 * 16 14 12 19 19 H 1.48495 * 109.47105 * 324.99689 * 16 14 12 20 20 C 1.46505 * 119.99928 * 359.97438 * 11 9 8 21 21 C 1.50694 * 109.46995 * 84.66701 * 20 11 9 22 22 O 1.20823 * 120.00326 * 0.02562 * 21 20 11 23 23 O 1.34233 * 120.00051 * 179.97438 * 21 20 11 24 24 C 1.38169 * 120.05307 * 0.02562 * 7 6 5 25 25 H 1.09001 * 109.46718 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47307 * 300.00166 * 1 2 3 27 27 H 1.09000 * 109.47017 * 60.00264 * 1 2 3 28 28 H 1.07999 * 120.02846 * 359.97332 * 4 3 2 29 29 H 1.08006 * 119.97239 * 180.29249 * 5 4 3 30 30 H 1.08007 * 119.94763 * 179.70298 * 6 5 4 31 31 H 1.09003 * 109.46673 * 30.02118 * 8 7 6 32 32 H 1.09002 * 109.47273 * 150.01725 * 8 7 6 33 33 H 0.97002 * 119.99750 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47469 * 204.67113 * 20 11 9 35 35 H 1.09004 * 109.46965 * 324.66960 * 20 11 9 36 36 H 0.96696 * 116.99921 * 180.02562 * 23 21 20 37 37 H 1.08008 * 120.02446 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0058 5 6 1.9207 3.6048 0.0006 6 6 3.3017 3.6759 0.0001 7 6 4.0559 2.5173 0.0001 8 6 5.5607 2.5984 0.0001 9 6 6.0623 2.6260 -1.4207 10 8 5.2753 2.5835 -2.3426 11 7 7.3854 2.6969 -1.6669 12 6 7.8418 2.7215 -2.9595 13 1 7.1488 2.8714 -3.7741 14 6 9.1960 2.5538 -3.2214 15 7 9.9692 1.9681 -2.3347 16 14 9.9176 3.1604 -4.8341 17 1 10.2650 4.5990 -4.7109 18 1 11.1409 2.3814 -5.1532 19 1 8.9206 2.9832 -5.9202 20 6 8.3361 2.7477 -0.5534 21 6 8.6375 1.3471 -0.0860 22 8 8.1125 0.4033 -0.6277 23 8 9.4900 1.1479 0.9315 24 6 3.4310 1.2849 0.0000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2127 2.3203 -0.0107 29 1 1.3338 4.5115 0.0008 30 1 3.7921 4.6382 0.0002 31 1 5.8755 3.5065 0.5143 32 1 5.9714 1.7291 0.5137 33 1 10.9145 1.8507 -2.5178 34 1 9.2578 3.2266 -0.8840 35 1 7.9037 3.3196 0.2677 36 1 9.6521 0.2320 1.1955 37 1 4.0207 0.3800 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738096559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:38 Heat of formation + Delta-G solvation = -121.545805 kcal Electronic energy + Delta-G solvation = -23570.242725 eV Core-core repulsion = 19892.838475 eV Total energy + Delta-G solvation = -3677.404250 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.01614 -39.42085 -38.29502 -37.11786 -35.25014 -34.52805 -32.31522 -31.58855 -30.26274 -27.89207 -27.46257 -26.93355 -24.49170 -22.30952 -21.37223 -21.00300 -19.04457 -17.39921 -17.20470 -16.92674 -16.28507 -16.10561 -15.78313 -15.62040 -15.57248 -14.62750 -14.47483 -14.24408 -14.07625 -13.60613 -13.20374 -12.94874 -12.70770 -12.23968 -12.04682 -11.89252 -11.68506 -11.61517 -11.37998 -11.14815 -10.93930 -10.89790 -10.59348 -10.45268 -10.39291 -10.26481 -9.69291 -9.04027 -8.72911 -8.36147 -7.96123 -7.93235 -6.45598 -3.87812 1.60091 1.74297 3.14358 3.24492 3.29504 3.38668 3.40619 3.63734 3.97204 4.11447 4.23708 4.78096 4.92955 5.00734 5.07239 5.11453 5.15761 5.29704 5.42074 5.54962 5.60856 5.68349 5.74840 5.88617 5.96708 6.08365 6.30739 6.45537 6.53065 6.65534 6.66408 6.91962 7.02833 7.46026 7.54116 7.59534 7.95613 8.36210 8.98561 9.08382 9.29723 9.83283 10.62352 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.019877 B = 0.004418 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.306620 B = 6336.440874 C = 6889.582910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.217 4.217 5 C -0.083 4.083 6 C -0.142 4.142 7 C -0.006 4.006 8 C -0.103 4.103 9 C 0.465 3.535 10 O -0.566 6.566 11 N -0.434 5.434 12 C -0.299 4.299 13 H 0.109 0.891 14 C 0.026 3.974 15 N -0.887 5.887 16 Si 0.931 3.069 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.270 1.270 20 C 0.140 3.860 21 C 0.488 3.512 22 O -0.508 6.508 23 O -0.533 6.533 24 C -0.134 4.134 25 H 0.096 0.904 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.271 0.729 34 H 0.139 0.861 35 H 0.076 0.924 36 H 0.392 0.608 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 2.041 9.729 13.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.078 3.922 4 C -0.235 4.235 5 C -0.102 4.102 6 C -0.160 4.160 7 C -0.006 4.006 8 C -0.143 4.143 9 C 0.253 3.747 10 O -0.448 6.448 11 N -0.154 5.154 12 C -0.426 4.426 13 H 0.127 0.873 14 C -0.175 4.175 15 N -0.528 5.528 16 Si 0.757 3.243 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.195 1.195 20 C 0.013 3.987 21 C 0.329 3.671 22 O -0.394 6.394 23 O -0.344 6.344 24 C -0.153 4.153 25 H 0.114 0.886 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.140 0.860 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.094 0.906 36 H 0.248 0.752 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.735 1.921 8.959 13.369 hybrid contribution 0.561 -0.502 -0.595 0.960 sum -9.174 1.419 8.364 12.495 Atomic orbital electron populations 1.22986 0.78979 1.03496 1.01100 1.86072 1.20909 1.27279 1.89047 1.18914 0.92162 0.83919 0.97175 1.21087 0.99432 0.92515 1.10494 1.20795 0.94448 0.96682 0.98229 1.20882 0.93632 0.97930 1.03566 1.19158 0.94340 0.92286 0.94852 1.20727 0.92102 1.03700 0.97754 1.19783 0.82782 0.82556 0.89568 1.90562 1.54591 1.53677 1.45974 1.43491 1.03006 1.63356 1.05597 1.19772 0.92434 1.46825 0.83590 0.87287 1.25198 0.96476 0.96152 0.99685 1.69822 1.06917 1.39213 1.36867 0.85859 0.78289 0.78624 0.81489 1.20214 1.21118 1.19463 1.20903 0.98117 0.90133 0.89511 1.23983 0.74341 0.93817 0.74979 1.90626 1.50756 1.44253 1.53723 1.84533 1.62843 1.35800 1.51209 1.20260 0.91204 0.98386 1.05467 0.88597 0.92944 0.92826 0.86021 0.86110 0.86050 0.89009 0.89325 0.91847 0.84320 0.90583 0.75181 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.87 10.50 -19.44 -0.20 -5.08 16 3 C 0.12 2.03 6.69 -39.22 -0.26 1.77 16 4 C -0.22 -3.10 9.04 -39.43 -0.36 -3.45 16 5 C -0.08 -1.18 10.04 -39.61 -0.40 -1.58 16 6 C -0.14 -2.28 9.70 -39.56 -0.38 -2.67 16 7 C -0.01 -0.11 4.37 -104.64 -0.46 -0.56 16 8 C -0.10 -1.92 4.44 -29.03 -0.13 -2.05 16 9 C 0.46 11.28 7.44 -10.99 -0.08 11.20 16 10 O -0.57 -15.81 15.64 5.55 0.09 -15.72 16 11 N -0.43 -10.86 2.17 -116.10 -0.25 -11.11 16 12 C -0.30 -8.21 9.42 -14.93 -0.14 -8.35 16 13 H 0.11 3.17 7.31 -52.48 -0.38 2.78 16 14 C 0.03 0.68 4.95 -17.47 -0.09 0.60 16 15 N -0.89 -22.98 9.27 55.50 0.51 -22.47 16 16 Si 0.93 20.51 29.60 -169.99 -5.03 15.48 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 20 C 0.14 2.98 4.98 -5.19 -0.03 2.96 16 21 C 0.49 10.66 6.05 36.00 0.22 10.88 16 22 O -0.51 -13.11 17.03 -18.75 -0.32 -13.42 16 23 O -0.53 -9.38 13.42 -39.26 -0.53 -9.91 16 24 C -0.13 -2.48 9.64 -39.44 -0.38 -2.86 16 25 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.44 7.67 -51.93 -0.40 0.04 16 27 H 0.05 0.50 7.65 -51.93 -0.40 0.10 16 28 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 29 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 30 H 0.12 1.74 8.06 -52.48 -0.42 1.31 16 31 H 0.09 1.40 7.36 -51.93 -0.38 1.02 16 32 H 0.09 1.62 7.50 -51.93 -0.39 1.23 16 33 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.14 3.10 6.01 -51.93 -0.31 2.79 16 35 H 0.08 1.29 6.66 -51.93 -0.35 0.94 16 36 H 0.39 5.27 9.10 45.56 0.41 5.69 16 37 H 0.13 2.40 8.06 -52.48 -0.42 1.98 16 LS Contribution 321.72 15.07 4.85 4.85 Total: -1.00 -34.94 321.72 -5.73 -40.67 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -3.35 Total: 9.53 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.49 Total: 7.18 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: 0.26 Total: -33.58 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.96 Total: -44.13 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.94 -5.73 -40.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738096559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.876 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds