Wall clock time and date at job start Fri Apr 10 2020 17:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35904 * 116.99950 * 2 1 4 4 C 1.38757 * 120.05224 * 359.72486 * 3 2 1 5 5 C 1.38125 * 119.94066 * 179.69818 * 4 3 2 6 6 C 1.38282 * 120.05589 * 0.60102 * 5 4 3 7 7 C 1.38245 * 120.11247 * 359.67331 * 6 5 4 8 8 C 1.50702 * 119.97433 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47259 * 270.02361 * 8 7 6 10 10 O 1.21294 * 119.99647 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00396 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00402 * 179.97438 * 11 9 8 13 13 H 1.08003 * 119.99898 * 11.51082 * 12 11 9 14 14 C 1.38946 * 120.00119 * 191.50257 * 12 11 9 15 15 N 1.31414 * 119.99878 * 21.40010 * 14 12 11 16 16 Si 1.86801 * 120.00178 * 201.38489 * 14 12 11 17 17 H 1.48507 * 109.46606 * 84.99283 * 16 14 12 18 18 H 1.48495 * 109.47314 * 204.98923 * 16 14 12 19 19 H 1.48495 * 109.47105 * 324.99689 * 16 14 12 20 20 C 1.46505 * 119.99928 * 359.97438 * 11 9 8 21 21 C 1.50694 * 109.46995 * 84.66701 * 20 11 9 22 22 O 1.20823 * 120.00326 * 0.02562 * 21 20 11 23 23 O 1.34233 * 120.00051 * 179.97438 * 21 20 11 24 24 C 1.38169 * 120.05307 * 0.02562 * 7 6 5 25 25 H 1.09001 * 109.46718 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47307 * 300.00166 * 1 2 3 27 27 H 1.09000 * 109.47017 * 60.00264 * 1 2 3 28 28 H 1.07999 * 120.02846 * 359.97332 * 4 3 2 29 29 H 1.08006 * 119.97239 * 180.29249 * 5 4 3 30 30 H 1.08007 * 119.94763 * 179.70298 * 6 5 4 31 31 H 1.09003 * 109.46673 * 30.02118 * 8 7 6 32 32 H 1.09002 * 109.47273 * 150.01725 * 8 7 6 33 33 H 0.97002 * 119.99750 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.47469 * 204.67113 * 20 11 9 35 35 H 1.09004 * 109.46965 * 324.66960 * 20 11 9 36 36 H 0.96696 * 116.99921 * 180.02562 * 23 21 20 37 37 H 1.08008 * 120.02446 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 -0.0058 5 6 1.9207 3.6048 0.0006 6 6 3.3017 3.6759 0.0001 7 6 4.0559 2.5173 0.0001 8 6 5.5607 2.5984 0.0001 9 6 6.0623 2.6260 -1.4207 10 8 5.2753 2.5835 -2.3426 11 7 7.3854 2.6969 -1.6669 12 6 7.8418 2.7215 -2.9595 13 1 7.1488 2.8714 -3.7741 14 6 9.1960 2.5538 -3.2214 15 7 9.9692 1.9681 -2.3347 16 14 9.9176 3.1604 -4.8341 17 1 10.2650 4.5990 -4.7109 18 1 11.1409 2.3814 -5.1532 19 1 8.9206 2.9832 -5.9202 20 6 8.3361 2.7477 -0.5534 21 6 8.6375 1.3471 -0.0860 22 8 8.1125 0.4033 -0.6277 23 8 9.4900 1.1479 0.9315 24 6 3.4310 1.2849 0.0000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 0.2127 2.3203 -0.0107 29 1 1.3338 4.5115 0.0008 30 1 3.7921 4.6382 0.0002 31 1 5.8755 3.5065 0.5143 32 1 5.9714 1.7291 0.5137 33 1 10.9145 1.8507 -2.5178 34 1 9.2578 3.2266 -0.8840 35 1 7.9037 3.3196 0.2677 36 1 9.6521 0.2320 1.1955 37 1 4.0207 0.3800 0.0004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738096559.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:34:37 Heat of formation + Delta-G solvation = -145.768833 kcal Electronic energy + Delta-G solvation = -23571.293114 eV Core-core repulsion = 19892.838475 eV Total energy + Delta-G solvation = -3678.454639 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.42253 -40.94094 -39.97078 -38.38553 -36.98596 -36.37046 -33.96571 -33.25367 -31.43122 -29.60723 -28.85016 -27.99224 -26.32785 -23.51952 -22.93206 -22.44554 -20.69339 -19.03011 -18.70829 -18.60051 -18.09004 -17.44954 -17.14328 -16.90855 -16.64809 -16.41962 -16.23258 -15.92013 -15.56431 -14.92891 -14.57199 -14.42792 -14.13569 -13.73647 -13.59942 -13.40724 -13.30008 -12.93004 -12.76920 -12.63027 -12.47453 -12.29737 -12.15154 -12.13088 -11.93281 -11.72819 -11.55338 -10.93594 -10.51776 -9.90507 -9.74829 -9.11954 -8.42772 -5.92703 0.36807 0.53131 1.37255 1.43286 1.54626 1.67878 1.88264 2.25159 2.38417 2.53890 2.75245 3.03206 3.17730 3.74359 3.89013 4.02877 4.15068 4.20111 4.28400 4.38764 4.40312 4.45688 4.53139 4.61443 4.71645 4.81397 4.84589 4.96109 5.08531 5.34131 5.46471 5.48978 5.68458 5.84663 5.93807 6.01343 6.39967 6.49643 7.11226 7.30071 7.44532 7.93813 8.62604 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.019877 B = 0.004418 C = 0.004063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.306620 B = 6336.440874 C = 6889.582910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.344 6.344 3 C 0.113 3.887 4 C -0.211 4.211 5 C -0.077 4.077 6 C -0.153 4.153 7 C -0.028 4.028 8 C -0.089 4.089 9 C 0.454 3.546 10 O -0.615 6.615 11 N -0.446 5.446 12 C -0.338 4.338 13 H 0.078 0.922 14 C -0.001 4.001 15 N -0.895 5.895 16 Si 0.992 3.008 17 H -0.258 1.258 18 H -0.279 1.279 19 H -0.282 1.282 20 C 0.136 3.864 21 C 0.496 3.504 22 O -0.556 6.556 23 O -0.516 6.516 24 C -0.169 4.169 25 H 0.117 0.883 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.276 0.724 34 H 0.131 0.869 35 H 0.124 0.876 36 H 0.413 0.587 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 3.483 10.967 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.068 3.932 4 C -0.229 4.229 5 C -0.095 4.095 6 C -0.171 4.171 7 C -0.029 4.029 8 C -0.129 4.129 9 C 0.244 3.756 10 O -0.501 6.501 11 N -0.165 5.165 12 C -0.465 4.465 13 H 0.095 0.905 14 C -0.201 4.201 15 N -0.535 5.535 16 Si 0.816 3.184 17 H -0.183 1.183 18 H -0.204 1.204 19 H -0.207 1.207 20 C 0.011 3.989 21 C 0.338 3.662 22 O -0.445 6.445 23 O -0.328 6.328 24 C -0.188 4.188 25 H 0.135 0.865 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.175 0.825 29 H 0.178 0.822 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.106 0.894 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.142 0.858 36 H 0.273 0.727 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.330 3.360 10.265 14.945 hybrid contribution 0.722 -1.031 -0.923 1.561 sum -9.608 2.329 9.342 13.602 Atomic orbital electron populations 1.23355 0.76262 1.05508 1.02428 1.86041 1.23786 1.27091 1.88924 1.19056 0.91773 0.85296 0.97059 1.21498 1.01116 0.91615 1.08720 1.21276 0.93976 0.98165 0.96081 1.21181 0.94754 0.97772 1.03440 1.19233 0.94085 0.93075 0.96500 1.20645 0.92853 1.05404 0.94013 1.20719 0.82283 0.81102 0.91464 1.90509 1.55763 1.55732 1.48099 1.43644 1.03982 1.63114 1.05765 1.19637 0.92860 1.49562 0.84468 0.90456 1.25902 0.96046 0.95383 1.02818 1.69903 1.07117 1.38515 1.38003 0.84968 0.77079 0.79010 0.77340 1.18290 1.20393 1.20733 1.21077 0.97513 0.90493 0.89858 1.23998 0.73868 0.93420 0.74882 1.90620 1.52678 1.45631 1.55617 1.84457 1.61157 1.37693 1.49469 1.20299 0.92583 0.97912 1.07993 0.86488 0.90935 0.91975 0.82537 0.82224 0.84377 0.85204 0.89401 0.91445 0.85193 0.85807 0.72730 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.34 -10.43 10.50 -92.46 -0.97 -11.40 16 3 C 0.11 3.73 6.69 22.50 0.15 3.88 16 4 C -0.21 -5.54 9.04 22.37 0.20 -5.34 16 5 C -0.08 -1.97 10.04 22.25 0.22 -1.75 16 6 C -0.15 -4.71 9.70 22.28 0.22 -4.50 16 7 C -0.03 -1.04 4.37 -19.88 -0.09 -1.13 16 8 C -0.09 -3.35 4.44 29.10 0.13 -3.22 16 9 C 0.45 22.71 7.44 87.66 0.65 23.36 16 10 O -0.62 -36.07 15.64 -3.07 -0.05 -36.12 16 11 N -0.45 -22.77 2.17 -639.60 -1.39 -24.15 16 12 C -0.34 -19.19 9.42 84.04 0.79 -18.40 16 13 H 0.08 4.77 7.31 -2.91 -0.02 4.75 16 14 C 0.00 -0.04 4.95 84.93 0.42 0.38 16 15 N -0.90 -46.22 9.27 21.66 0.20 -46.02 16 16 Si 0.99 42.26 29.60 68.60 2.03 44.29 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 18 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 C 0.14 5.71 4.98 85.63 0.43 6.14 16 21 C 0.50 21.40 6.05 71.23 0.43 21.84 16 22 O -0.56 -29.21 17.03 21.97 0.37 -28.84 16 23 O -0.52 -17.19 13.42 -51.44 -0.69 -17.88 16 24 C -0.17 -6.50 9.64 22.36 0.22 -6.28 16 25 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.01 7.67 -2.39 -0.02 0.99 16 27 H 0.06 1.01 7.65 -2.39 -0.02 0.99 16 28 H 0.16 2.91 6.30 -2.91 -0.02 2.89 16 29 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 30 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.13 3.72 7.36 -2.39 -0.02 3.70 16 32 H 0.09 3.27 7.50 -2.39 -0.02 3.25 16 33 H 0.28 13.43 8.31 -92.71 -0.77 12.66 16 34 H 0.13 5.72 6.01 -2.39 -0.01 5.71 16 35 H 0.12 3.91 6.66 -2.38 -0.02 3.89 16 36 H 0.41 10.32 9.10 -74.06 -0.67 9.64 16 37 H 0.10 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -79.92 321.72 4.84 -75.08 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.44 Total: 28.61 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 4.88 Total: 16.43 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -1.19 Total: -70.17 kcal Atomic # 8 Polarization: -92.91 SS G_CDS: -1.33 Total: -94.24 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -79.92 4.84 -75.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738096559.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.684 kcal (2) G-P(sol) polarization free energy of solvation -79.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds