Wall clock time and date at job start Fri Apr 10 2020 17:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00426 * 2 1 4 4 C 1.50694 * 109.46994 * 270.00314 * 3 2 1 5 5 O 1.20829 * 120.00455 * 359.97438 * 4 3 2 6 6 O 1.34237 * 119.99928 * 179.97438 * 4 3 2 7 7 C 1.34783 * 119.99988 * 179.97438 * 2 1 3 8 8 O 1.21284 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47151 * 180.02562 * 9 7 2 11 11 C 1.38328 * 119.96224 * 270.02423 * 10 9 7 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99818 * 10 9 7 25 25 H 1.08998 * 109.47741 * 270.00060 * 1 2 3 26 26 H 1.09001 * 109.47144 * 30.00541 * 1 2 3 27 27 H 1.09003 * 109.47209 * 149.99639 * 1 2 3 28 28 H 1.09002 * 109.46470 * 29.99242 * 3 2 1 29 29 H 1.08991 * 109.47749 * 149.99605 * 3 2 1 30 30 H 0.96697 * 116.99815 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.46756 * 60.00007 * 9 7 2 32 32 H 1.08998 * 109.46908 * 300.00650 * 9 7 2 33 33 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 34 34 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 35 35 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 36 36 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 8 2.0564 1.0236 -2.3392 6 8 3.1081 2.8469 -1.6661 7 6 2.1388 -1.1673 0.0005 8 8 3.3517 -1.1673 0.0010 9 6 1.3853 -2.4724 0.0017 10 6 2.3646 -3.6178 0.0027 11 6 2.8140 -4.1436 -1.1952 12 6 3.7130 -5.1943 -1.1985 13 6 4.1700 -5.7177 -0.0047 14 6 3.7165 -5.1958 1.1994 15 8 4.1593 -5.7120 2.3743 16 6 4.9434 -6.8067 2.3051 17 1 5.2589 -7.1850 1.3440 18 6 5.3445 -7.4467 3.4678 19 7 4.9597 -6.9862 4.6385 20 14 6.4302 -8.9638 3.3719 21 1 6.7205 -9.2756 1.9493 22 1 7.7036 -8.7074 4.0917 23 1 5.7302 -10.1139 3.9984 24 6 2.8128 -4.1409 1.1993 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6083 2.0284 0.5137 29 1 3.1499 1.1384 0.5138 30 1 3.2455 3.0841 -2.5934 31 1 0.7583 -2.5306 -0.8881 32 1 0.7590 -2.5294 0.8919 33 1 2.4619 -3.7327 -2.1299 34 1 4.0616 -5.6030 -2.1353 35 1 4.8761 -6.5349 -0.0079 36 1 5.2401 -7.4341 5.4518 37 1 2.4613 -3.7301 2.1343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820562221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:17 Heat of formation + Delta-G solvation = -118.621813 kcal Electronic energy + Delta-G solvation = -22700.488316 eV Core-core repulsion = 19023.210860 eV Total energy + Delta-G solvation = -3677.277456 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.76360 -39.66828 -38.74299 -36.61323 -36.29228 -35.47416 -32.42511 -32.04691 -29.81247 -29.02494 -27.21776 -26.18130 -25.15652 -22.47708 -21.57378 -20.84310 -19.28515 -18.43414 -17.58862 -17.25890 -17.12242 -16.86932 -16.04873 -15.77430 -15.34248 -14.93238 -14.37567 -14.33345 -13.71616 -13.58257 -13.35650 -13.25806 -13.07124 -12.84172 -12.64275 -12.44365 -12.23838 -11.82268 -11.73602 -11.50233 -11.23282 -10.94213 -10.79775 -10.70384 -10.55650 -10.38612 -9.83256 -9.27550 -9.03602 -8.78547 -8.00802 -7.15325 -6.38901 -3.97662 1.95913 2.08329 2.37640 2.46348 2.75251 3.14205 3.17254 3.17596 3.23243 4.01606 4.40758 4.66433 4.77605 4.87859 4.96263 5.00491 5.15089 5.16457 5.20342 5.32811 5.40709 5.52866 5.73536 5.80647 6.00676 6.09011 6.23311 6.24269 6.40084 6.71144 6.97783 7.11237 7.13970 7.33018 7.43794 7.50140 7.62855 7.89103 8.06573 8.14895 9.07191 9.78533 10.79583 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.003089 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.010390 B = 9061.376195 C = 9197.288814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.613 5.613 3 C 0.125 3.875 4 C 0.460 3.540 5 O -0.506 6.506 6 O -0.518 6.518 7 C 0.522 3.478 8 O -0.512 6.512 9 C -0.089 4.089 10 C -0.036 4.036 11 C -0.195 4.195 12 C -0.075 4.075 13 C -0.230 4.230 14 C 0.154 3.846 15 O -0.181 6.181 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.865 5.865 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.174 4.174 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.410 0.590 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.268 0.732 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 15.984 -9.518 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.350 5.350 3 C 0.000 4.000 4 C 0.300 3.700 5 O -0.393 6.393 6 O -0.330 6.330 7 C 0.311 3.689 8 O -0.385 6.385 9 C -0.128 4.128 10 C -0.036 4.036 11 C -0.214 4.214 12 C -0.093 4.093 13 C -0.249 4.249 14 C 0.101 3.899 15 O -0.084 6.084 16 C -0.466 4.466 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.500 5.500 20 Si 0.765 3.235 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.193 4.193 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.146 0.854 30 H 0.269 0.731 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.078 0.922 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.347 15.664 -8.873 20.284 hybrid contribution 0.613 -0.498 -0.853 1.162 sum -8.735 15.166 -9.726 20.022 Atomic orbital electron populations 1.21865 0.78490 1.03778 1.02138 1.47641 1.07310 1.04518 1.75491 1.20793 1.01753 0.87449 0.90010 1.24302 0.73993 0.77927 0.93807 1.90730 1.48240 1.53534 1.46791 1.84522 1.70967 1.41096 1.36427 1.20917 0.88275 0.84891 0.74828 1.90762 1.13912 1.86844 1.46959 1.20605 0.97814 0.89839 1.04590 1.18672 0.97093 0.94698 0.93172 1.20374 1.03919 1.00960 0.96108 1.20680 0.96155 0.95666 0.96826 1.21181 1.06329 1.05266 0.92122 1.19266 0.91622 0.92424 0.86566 1.83974 1.58888 1.40862 1.24713 1.21366 1.27209 1.03359 0.94684 0.89094 1.25268 0.98088 0.99000 0.94206 1.70048 1.43074 1.39507 0.97398 0.85657 0.79075 0.79965 0.78777 1.19131 1.20203 1.20195 1.19937 1.02233 1.00004 0.97118 0.91800 0.91260 0.90242 0.86110 0.85399 0.73148 0.88123 0.87998 0.87929 0.87476 0.85606 0.92184 0.86786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.55 10.24 59.84 0.61 1.16 16 2 N -0.61 -6.72 2.36 -182.96 -0.43 -7.15 16 3 C 0.13 1.16 6.00 -5.20 -0.03 1.13 16 4 C 0.46 4.94 8.40 36.00 0.30 5.24 16 5 O -0.51 -7.24 17.19 -18.75 -0.32 -7.56 16 6 O -0.52 -4.14 13.42 -39.28 -0.53 -4.66 16 7 C 0.52 7.92 7.67 -10.98 -0.08 7.84 16 8 O -0.51 -10.15 15.61 5.55 0.09 -10.07 16 9 C -0.09 -1.24 4.38 -29.04 -0.13 -1.36 16 10 C -0.04 -0.68 4.37 -104.65 -0.46 -1.13 16 11 C -0.19 -3.70 9.70 -39.53 -0.38 -4.08 16 12 C -0.07 -1.50 10.04 -39.61 -0.40 -1.89 16 13 C -0.23 -5.31 9.17 -39.40 -0.36 -5.67 16 14 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 15 O -0.18 -5.33 9.76 0.05 0.00 -5.33 16 16 C -0.39 -11.22 9.49 30.89 0.29 -10.93 16 17 H 0.09 2.44 5.21 -52.49 -0.27 2.17 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.84 13.67 55.48 0.76 -25.09 16 20 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 21 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 24 C -0.17 -3.86 9.65 -39.39 -0.38 -4.24 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 27 H 0.08 0.51 6.44 -51.93 -0.33 0.18 16 28 H 0.12 0.62 8.07 -51.93 -0.42 0.20 16 29 H 0.13 1.31 7.42 -51.93 -0.39 0.93 16 30 H 0.41 1.70 9.10 45.56 0.41 2.11 16 31 H 0.10 1.14 7.34 -51.93 -0.38 0.76 16 32 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 33 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.13 2.89 5.64 -52.48 -0.30 2.59 16 36 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 LS Contribution 330.10 15.07 4.97 4.97 Total: -1.00 -38.39 330.10 -5.19 -43.58 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -3.34 Total: 4.62 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.37 Total: -9.30 kcal Atomic # 7 Polarization: -32.57 SS G_CDS: 0.33 Total: -32.24 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.76 Total: -27.62 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -38.39 -5.19 -43.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820562221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.040 kcal (2) G-P(sol) polarization free energy of solvation -38.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds