Wall clock time and date at job start Fri Apr 10 2020 17:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.46503 * 120.00426 * 2 1 4 4 C 1.50694 * 109.46994 * 270.00314 * 3 2 1 5 5 O 1.20829 * 120.00455 * 359.97438 * 4 3 2 6 6 O 1.34237 * 119.99928 * 179.97438 * 4 3 2 7 7 C 1.34783 * 119.99988 * 179.97438 * 2 1 3 8 8 O 1.21284 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00059 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47151 * 180.02562 * 9 7 2 11 11 C 1.38328 * 119.96224 * 270.02423 * 10 9 7 12 12 C 1.38281 * 120.13505 * 179.97438 * 11 10 9 13 13 C 1.38120 * 120.06679 * 359.68445 * 12 11 10 14 14 C 1.38852 * 119.93490 * 0.58817 * 13 12 11 15 15 O 1.35752 * 120.07221 * 179.70368 * 14 13 12 16 16 C 1.34829 * 116.99954 * 354.17311 * 15 14 13 17 17 H 1.07998 * 119.99999 * 5.03596 * 16 15 14 18 18 C 1.38656 * 119.99670 * 185.03445 * 16 15 14 19 19 N 1.31550 * 120.00275 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99668 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47010 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46908 * 119.99967 * 20 18 16 23 23 H 1.48504 * 109.47373 * 240.00300 * 20 18 16 24 24 C 1.38073 * 119.96539 * 89.99818 * 10 9 7 25 25 H 1.08998 * 109.47741 * 270.00060 * 1 2 3 26 26 H 1.09001 * 109.47144 * 30.00541 * 1 2 3 27 27 H 1.09003 * 109.47209 * 149.99639 * 1 2 3 28 28 H 1.09002 * 109.46470 * 29.99242 * 3 2 1 29 29 H 1.08991 * 109.47749 * 149.99605 * 3 2 1 30 30 H 0.96697 * 116.99815 * 179.97438 * 6 4 3 31 31 H 1.09004 * 109.46756 * 60.00007 * 9 7 2 32 32 H 1.08998 * 109.46908 * 300.00650 * 9 7 2 33 33 H 1.08001 * 119.93314 * 359.97438 * 11 10 9 34 34 H 1.07993 * 119.96315 * 179.97438 * 12 11 10 35 35 H 1.08006 * 120.03715 * 180.31908 * 13 12 11 36 36 H 0.96999 * 119.99936 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.03547 * 0.04988 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 8 2.0564 1.0236 -2.3392 6 8 3.1081 2.8469 -1.6661 7 6 2.1388 -1.1673 0.0005 8 8 3.3517 -1.1673 0.0010 9 6 1.3853 -2.4724 0.0017 10 6 2.3646 -3.6178 0.0027 11 6 2.8140 -4.1436 -1.1952 12 6 3.7130 -5.1943 -1.1985 13 6 4.1700 -5.7177 -0.0047 14 6 3.7165 -5.1958 1.1994 15 8 4.1593 -5.7120 2.3743 16 6 4.9434 -6.8067 2.3051 17 1 5.2589 -7.1850 1.3440 18 6 5.3445 -7.4467 3.4678 19 7 4.9597 -6.9862 4.6385 20 14 6.4302 -8.9638 3.3719 21 1 6.7205 -9.2756 1.9493 22 1 7.7036 -8.7074 4.0917 23 1 5.7302 -10.1139 3.9984 24 6 2.8128 -4.1409 1.1993 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6083 2.0284 0.5137 29 1 3.1499 1.1384 0.5138 30 1 3.2455 3.0841 -2.5934 31 1 0.7583 -2.5306 -0.8881 32 1 0.7590 -2.5294 0.8919 33 1 2.4619 -3.7327 -2.1299 34 1 4.0616 -5.6030 -2.1353 35 1 4.8761 -6.5349 -0.0079 36 1 5.2401 -7.4341 5.4518 37 1 2.4613 -3.7301 2.1343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000820562221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:16 Heat of formation + Delta-G solvation = -146.821020 kcal Electronic energy + Delta-G solvation = -22701.711125 eV Core-core repulsion = 19023.210860 eV Total energy + Delta-G solvation = -3678.500265 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68787 -40.92382 -40.29125 -38.25109 -37.22044 -36.44776 -34.34724 -33.58572 -31.06470 -30.44897 -28.38677 -27.37593 -26.92152 -23.54885 -23.20019 -22.35434 -20.38889 -19.42538 -19.22707 -18.75369 -18.23779 -17.88914 -17.05166 -16.76090 -16.63019 -16.56692 -16.08404 -15.82626 -15.49537 -15.01726 -14.59207 -14.37935 -14.16145 -14.03034 -13.75019 -13.59488 -13.46860 -13.05419 -12.97461 -12.83196 -12.55405 -12.49232 -12.34104 -12.24135 -12.08233 -11.82147 -11.20615 -11.04324 -10.80103 -9.89611 -9.65086 -8.98890 -8.46739 -6.15160 0.49952 0.74252 1.14968 1.34647 1.41653 1.43689 1.53295 1.79448 2.17970 2.37766 2.82886 3.15421 3.42510 3.66784 3.87353 4.08654 4.17743 4.20320 4.29671 4.34836 4.36897 4.41516 4.56354 4.59313 4.72560 4.79249 4.98169 5.05514 5.13304 5.29642 5.33930 5.58039 5.63775 5.71748 5.74320 6.03099 6.14777 6.26302 6.92586 6.97924 7.09462 7.78891 8.76950 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.003089 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.010390 B = 9061.376195 C = 9197.288814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.606 5.606 3 C 0.118 3.882 4 C 0.464 3.536 5 O -0.547 6.547 6 O -0.511 6.511 7 C 0.517 3.483 8 O -0.574 6.574 9 C -0.088 4.088 10 C -0.027 4.027 11 C -0.184 4.184 12 C -0.074 4.074 13 C -0.246 4.246 14 C 0.114 3.886 15 O -0.233 6.233 16 C -0.414 4.414 17 H 0.099 0.901 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 1.020 2.980 21 H -0.253 1.253 22 H -0.268 1.268 23 H -0.265 1.265 24 C -0.189 4.189 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.168 0.832 29 H 0.115 0.885 30 H 0.427 0.573 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.118 0.882 36 H 0.273 0.727 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.366 17.148 -11.614 23.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C -0.006 4.006 4 C 0.306 3.694 5 O -0.437 6.437 6 O -0.324 6.324 7 C 0.307 3.693 8 O -0.452 6.452 9 C -0.126 4.126 10 C -0.028 4.028 11 C -0.202 4.202 12 C -0.092 4.092 13 C -0.265 4.265 14 C 0.064 3.936 15 O -0.140 6.140 16 C -0.491 4.491 17 H 0.117 0.883 18 C -0.220 4.220 19 N -0.559 5.559 20 Si 0.839 3.161 21 H -0.176 1.176 22 H -0.193 1.193 23 H -0.190 1.190 24 C -0.208 4.208 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.185 0.815 29 H 0.133 0.867 30 H 0.288 0.712 31 H 0.155 0.845 32 H 0.147 0.853 33 H 0.157 0.843 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.931 16.907 -11.020 22.952 hybrid contribution 0.913 -0.554 -0.425 1.149 sum -10.018 16.354 -11.445 22.334 Atomic orbital electron populations 1.22218 0.75691 1.05169 1.04082 1.47676 1.09020 1.03883 1.73382 1.21088 1.02092 0.87820 0.89635 1.24490 0.73185 0.77863 0.93823 1.90713 1.50162 1.54815 1.47982 1.84486 1.69998 1.39851 1.38102 1.21068 0.87602 0.86345 0.74324 1.90745 1.16333 1.87822 1.50307 1.20720 0.96891 0.87325 1.07712 1.19188 0.96645 0.95167 0.91791 1.20935 1.02130 0.99559 0.97578 1.21100 0.95632 0.95520 0.96942 1.21288 1.06827 1.05643 0.92736 1.19855 0.93316 0.93926 0.86540 1.83933 1.60865 1.42162 1.27005 1.21858 1.27784 1.03869 0.95551 0.88328 1.26592 0.99520 1.02489 0.93418 1.70188 1.45507 1.41830 0.98377 0.84519 0.76828 0.75226 0.79530 1.17648 1.19350 1.19032 1.20208 1.02241 0.99635 0.98698 0.89519 0.89462 0.89428 0.81456 0.86746 0.71156 0.84513 0.85303 0.84321 0.83895 0.86396 0.91820 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.24 127.77 1.31 1.97 16 2 N -0.61 -11.57 2.36 -851.15 -2.01 -13.58 16 3 C 0.12 1.91 6.00 85.63 0.51 2.42 16 4 C 0.46 9.02 8.40 71.23 0.60 9.62 16 5 O -0.55 -14.64 17.19 21.95 0.38 -14.26 16 6 O -0.51 -7.04 13.42 -51.49 -0.69 -7.73 16 7 C 0.52 14.71 7.67 87.66 0.67 15.38 16 8 O -0.57 -22.66 15.61 -3.04 -0.05 -22.71 16 9 C -0.09 -2.17 4.38 29.10 0.13 -2.04 16 10 C -0.03 -0.99 4.37 -19.88 -0.09 -1.08 16 11 C -0.18 -6.48 9.70 22.30 0.22 -6.27 16 12 C -0.07 -2.84 10.04 22.25 0.22 -2.61 16 13 C -0.25 -11.62 9.17 22.39 0.21 -11.42 16 14 C 0.11 6.06 6.65 22.58 0.15 6.21 16 15 O -0.23 -14.69 9.76 -22.74 -0.22 -14.91 16 16 C -0.41 -25.16 9.49 67.92 0.64 -24.52 16 17 H 0.10 5.55 5.21 -2.91 -0.02 5.54 16 18 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 19 N -0.92 -57.80 13.67 21.61 0.30 -57.50 16 20 Si 1.02 44.19 29.55 68.60 2.03 46.22 16 21 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.19 -8.60 9.65 22.39 0.22 -8.38 16 25 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.09 0.58 8.07 -2.39 -0.02 0.56 16 27 H 0.09 0.72 6.44 -2.39 -0.02 0.71 16 28 H 0.17 1.06 8.07 -2.39 -0.02 1.04 16 29 H 0.11 2.25 7.42 -2.39 -0.02 2.23 16 30 H 0.43 2.63 9.10 -74.06 -0.67 1.96 16 31 H 0.14 2.43 7.34 -2.38 -0.02 2.41 16 32 H 0.13 2.52 8.05 -2.39 -0.02 2.50 16 33 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 34 H 0.14 4.39 8.06 -2.91 -0.02 4.37 16 35 H 0.12 5.63 5.64 -2.91 -0.02 5.61 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -90.56 330.10 5.43 -85.13 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.45 Total: 20.93 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 5.25 Total: -21.59 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.71 Total: -71.08 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -0.58 Total: -59.61 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -90.56 5.43 -85.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820562221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.689 kcal (2) G-P(sol) polarization free energy of solvation -90.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds