Wall clock time and date at job start Fri Apr 10 2020 17:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34227 * 116.99772 * 2 1 4 4 O 1.20823 * 120.00427 * 0.02562 * 3 2 1 5 5 C 1.50706 * 119.99742 * 179.97438 * 3 2 1 6 6 N 1.46502 * 109.46965 * 179.97438 * 5 3 2 7 7 C 1.36931 * 120.00307 * 264.28892 * 6 5 3 8 8 H 1.07995 * 120.00375 * 195.73249 * 7 6 5 9 9 C 1.38814 * 119.99800 * 15.72795 * 7 6 5 10 10 N 1.31617 * 120.00278 * 22.40871 * 9 7 6 11 11 Si 1.86798 * 120.00049 * 202.40449 * 9 7 6 12 12 H 1.48506 * 109.47025 * 89.99942 * 11 9 7 13 13 H 1.48499 * 109.47600 * 210.00081 * 11 9 7 14 14 H 1.48504 * 109.47287 * 330.00290 * 11 9 7 15 15 C 1.46500 * 119.99483 * 84.01413 * 6 5 3 16 16 C 1.50701 * 109.46999 * 89.99870 * 15 6 5 17 17 C 1.38364 * 119.85200 * 269.72514 * 16 15 6 18 18 C 1.37941 * 120.15519 * 179.72421 * 17 16 15 19 19 C 1.39638 * 119.84320 * 0.56863 * 18 17 16 20 20 C 1.47728 * 120.14615 * 179.68299 * 19 18 17 21 21 O 1.21471 * 119.99610 * 180.02562 * 20 19 18 22 22 O 1.34711 * 120.00343 * 0.02562 * 20 19 18 23 23 C 1.39623 * 119.69877 * 359.70600 * 19 18 17 24 24 C 1.37941 * 119.85390 * 359.97438 * 23 19 18 25 25 H 1.09007 * 109.46859 * 60.00574 * 1 2 3 26 26 H 1.09005 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47265 * 300.00554 * 1 2 3 28 28 H 1.08998 * 109.46841 * 59.99906 * 5 3 2 29 29 H 1.08997 * 109.47107 * 300.00320 * 5 3 2 30 30 H 0.96995 * 120.00085 * 179.97438 * 10 9 7 31 31 H 1.08996 * 109.46938 * 209.99473 * 15 6 5 32 32 H 1.08996 * 109.47487 * 330.00087 * 15 6 5 33 33 H 1.08005 * 119.91957 * 359.97438 * 17 16 15 34 34 H 1.07995 * 120.08366 * 180.27342 * 18 17 16 35 35 H 0.96692 * 116.99956 * 180.02562 * 22 20 19 36 36 H 1.08002 * 120.07460 * 179.97438 * 23 19 18 37 37 H 1.07993 * 119.92829 * 180.02562 * 24 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 7 3.9817 2.6798 -0.0002 7 6 4.2895 3.3022 -1.1804 8 1 4.8307 4.2367 -1.1730 9 6 3.9059 2.7318 -2.3864 10 7 2.9066 1.8759 -2.4213 11 14 4.8078 3.1792 -3.9598 12 1 5.9427 2.2432 -4.1631 13 1 3.8741 3.0822 -5.1105 14 1 5.3239 4.5679 -3.8569 15 6 4.0619 3.4204 1.2613 16 6 5.4445 3.2738 1.8428 17 6 5.7198 2.2316 2.7102 18 6 6.9846 2.0882 3.2417 19 6 7.9851 3.0048 2.9118 20 6 9.3400 2.8616 3.4826 21 8 10.2081 3.6608 3.1941 22 8 9.6129 1.8448 4.3230 23 6 7.6987 4.0574 2.0403 24 6 6.4314 4.1852 1.5109 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 3.9564 0.7805 -0.8891 29 1 3.9557 0.7809 0.8908 30 1 2.6384 1.4777 -3.2641 31 1 3.8551 4.4747 1.0773 32 1 3.3286 3.0233 1.9631 33 1 4.9437 1.5263 2.9685 34 1 7.1995 1.2717 3.9151 35 1 10.5135 1.7927 4.6712 36 1 8.4678 4.7701 1.7814 37 1 6.2087 4.9987 0.8364 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000820668211.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:23 Heat of formation + Delta-G solvation = -123.054350 kcal Electronic energy + Delta-G solvation = -23266.061398 eV Core-core repulsion = 19588.591733 eV Total energy + Delta-G solvation = -3677.469665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31666 -39.10285 -38.58826 -36.15079 -35.96145 -34.66669 -32.36876 -30.82179 -30.55033 -28.28502 -26.55193 -25.97502 -23.68130 -22.46304 -21.80300 -20.52103 -19.73854 -18.10088 -17.38688 -16.93215 -16.36189 -15.68454 -15.59681 -15.28005 -14.92635 -14.86623 -14.78900 -14.22790 -13.75246 -13.39145 -13.25656 -13.06720 -12.51348 -12.45121 -12.16130 -11.61135 -11.56764 -11.47579 -11.20152 -11.08127 -10.92546 -10.69507 -10.56620 -10.47266 -10.16375 -10.08130 -9.69820 -9.26067 -8.75231 -8.66185 -8.54281 -7.17961 -5.99971 -3.33822 0.89075 1.63295 2.66306 3.03911 3.32436 3.40201 3.40990 3.76306 3.90942 4.06423 4.42638 4.96072 5.12138 5.15251 5.23250 5.34842 5.41860 5.64612 5.68412 5.74529 5.80193 6.01822 6.02455 6.06773 6.21306 6.29384 6.36734 6.44524 6.49033 6.56621 6.71476 6.94825 6.97738 7.12606 7.59832 7.68659 7.88229 8.07936 8.91826 9.28216 9.60550 10.02094 11.10767 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.015375 B = 0.004726 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.684454 B = 5922.932242 C = 7166.820807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.382 6.382 3 C 0.464 3.536 4 O -0.506 6.506 5 C 0.188 3.812 6 N -0.557 5.557 7 C -0.259 4.259 8 H 0.082 0.918 9 C 0.005 3.995 10 N -0.901 5.901 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.292 1.292 14 H -0.279 1.279 15 C 0.173 3.827 16 C -0.036 4.036 17 C -0.131 4.131 18 C -0.062 4.062 19 C -0.151 4.151 20 C 0.530 3.470 21 O -0.524 6.524 22 O -0.514 6.514 23 C -0.055 4.055 24 C -0.114 4.114 25 H 0.053 0.947 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.115 0.885 29 H 0.053 0.947 30 H 0.258 0.742 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.410 0.590 36 H 0.131 0.869 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 -2.907 11.149 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.300 6.300 3 C 0.304 3.696 4 O -0.391 6.391 5 C 0.059 3.941 6 N -0.275 5.275 7 C -0.387 4.387 8 H 0.099 0.901 9 C -0.194 4.194 10 N -0.545 5.545 11 Si 0.739 3.261 12 H -0.213 1.213 13 H -0.219 1.219 14 H -0.204 1.204 15 C 0.046 3.954 16 C -0.039 4.039 17 C -0.149 4.149 18 C -0.080 4.080 19 C -0.152 4.152 20 C 0.376 3.624 21 O -0.414 6.414 22 O -0.326 6.326 23 C -0.073 4.073 24 C -0.133 4.133 25 H 0.072 0.928 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.133 0.867 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.268 0.732 36 H 0.148 0.852 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.656 -2.407 10.736 11.947 hybrid contribution 0.636 0.171 -0.893 1.109 sum 5.292 -2.236 9.844 11.398 Atomic orbital electron populations 1.22870 0.79707 1.01400 1.01299 1.86543 1.21061 1.36665 1.85697 1.25542 0.93532 0.80218 0.70292 1.90469 1.66711 1.36475 1.45451 1.20331 0.85391 0.86640 1.01765 1.43887 1.74787 1.07013 1.01846 1.19259 1.29801 1.07079 0.82592 0.90058 1.24829 0.96629 0.99878 0.98024 1.69868 1.24863 1.33710 1.26084 0.86175 0.79138 0.78223 0.82562 1.21265 1.21854 1.20379 1.19924 0.89265 0.97832 0.88403 1.21438 0.99150 0.92126 0.91198 1.21067 0.96567 0.98700 0.98607 1.21345 0.92306 0.96972 0.97423 1.18886 0.90626 1.00912 1.04777 1.21080 0.88824 0.77299 0.75206 1.90859 1.48485 1.42961 1.59084 1.84581 1.38869 1.49728 1.59399 1.21207 0.97062 0.95540 0.93479 1.21053 0.92012 1.00369 0.99820 0.92821 0.90065 0.93574 0.86701 0.92957 0.93133 0.91477 0.92834 0.85586 0.85116 0.73237 0.85154 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.56 101.05 1.07 1.79 16 2 O -0.38 -8.00 10.57 -39.25 -0.41 -8.42 16 3 C 0.46 10.87 6.17 36.01 0.22 11.09 16 4 O -0.51 -13.38 15.89 -18.75 -0.30 -13.68 16 5 C 0.19 4.17 5.49 -5.19 -0.03 4.14 16 6 N -0.56 -12.67 2.02 -175.99 -0.35 -13.03 16 7 C -0.26 -6.54 9.66 -15.06 -0.15 -6.69 16 8 H 0.08 2.00 7.92 -52.49 -0.42 1.58 16 9 C 0.00 0.13 4.86 -17.43 -0.08 0.04 16 10 N -0.90 -24.74 9.30 55.49 0.52 -24.22 16 11 Si 0.91 21.03 29.61 -169.99 -5.03 16.00 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 15 C 0.17 3.25 5.76 -5.19 -0.03 3.22 16 16 C -0.04 -0.59 5.47 -104.52 -0.57 -1.16 16 17 C -0.13 -1.88 9.68 -39.64 -0.38 -2.26 16 18 C -0.06 -0.83 9.62 -39.17 -0.38 -1.20 16 19 C -0.15 -2.15 5.87 -104.98 -0.62 -2.77 16 20 C 0.53 7.19 8.27 34.61 0.29 7.48 16 21 O -0.52 -8.39 17.13 -19.24 -0.33 -8.72 16 22 O -0.51 -5.16 12.68 -40.52 -0.51 -5.68 16 23 C -0.05 -0.81 9.60 -39.17 -0.38 -1.18 16 24 C -0.11 -1.78 9.68 -39.64 -0.38 -2.16 16 25 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.12 2.79 6.34 -51.93 -0.33 2.46 16 29 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.07 1.28 7.98 -51.93 -0.41 0.86 16 32 H 0.05 0.97 8.01 -51.93 -0.42 0.55 16 33 H 0.13 1.62 8.06 -52.48 -0.42 1.19 16 34 H 0.13 1.46 7.61 -52.49 -0.40 1.06 16 35 H 0.41 2.15 9.11 45.56 0.42 2.57 16 36 H 0.13 1.82 7.65 -52.49 -0.40 1.42 16 37 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 LS Contribution 330.77 15.07 4.98 4.98 Total: -1.00 -32.58 330.77 -6.50 -39.07 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -3.63 Total: 3.35 kcal Atomic # 6 Polarization: 11.76 SS G_CDS: -1.42 Total: 10.34 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.16 Total: -37.25 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -1.56 Total: -36.49 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.58 -6.50 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000820668211.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.983 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds