Wall clock time and date at job start Fri Apr 10 2020 17:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 116.99614 * 2 1 4 4 O 1.20821 * 120.00166 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99601 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47214 * 180.02562 * 5 3 2 7 7 C 1.37090 * 120.00424 * 270.00565 * 6 5 3 8 8 H 1.08001 * 120.00344 * 139.92978 * 7 6 5 9 9 C 1.38958 * 119.99888 * 319.93145 * 7 6 5 10 10 N 1.31406 * 119.99800 * 163.55967 * 9 7 6 11 11 Si 1.86795 * 119.99841 * 343.55763 * 9 7 6 12 12 H 1.48495 * 109.47369 * 95.42528 * 11 9 7 13 13 H 1.48505 * 109.47342 * 215.42603 * 11 9 7 14 14 H 1.48498 * 109.47133 * 335.42426 * 11 9 7 15 15 C 1.34780 * 119.99594 * 90.00175 * 6 5 3 16 16 O 1.21288 * 120.00265 * 5.52154 * 15 6 5 17 17 C 1.50703 * 119.99884 * 185.51507 * 15 6 5 18 18 H 1.09008 * 115.56116 * 26.77524 * 17 15 6 19 19 C 1.53072 * 117.49514 * 241.06470 * 17 15 6 20 20 C 1.52997 * 59.98394 * 252.51149 * 19 17 15 21 21 H 1.09002 * 117.49722 * 107.49933 * 20 19 17 22 22 C 1.50704 * 117.50198 * 252.49633 * 20 19 17 23 23 C 1.34517 * 125.78733 * 188.74388 * 22 20 19 24 24 C 1.41386 * 106.83463 * 179.75175 * 23 22 20 25 25 C 1.34506 * 106.84442 * 0.37698 * 24 23 22 26 26 O 1.34299 * 125.78757 * 8.72647 * 22 20 19 27 27 H 1.09000 * 109.46979 * 59.99987 * 1 2 3 28 28 H 1.09001 * 109.47104 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47419 * 300.00113 * 1 2 3 30 30 H 1.09004 * 109.47209 * 60.00336 * 5 3 2 31 31 H 1.08997 * 109.47564 * 300.00346 * 5 3 2 32 32 H 0.97004 * 119.99833 * 179.97438 * 10 9 7 33 33 H 1.09004 * 117.51092 * 145.03818 * 19 17 15 34 34 H 1.08994 * 117.51608 * 359.97438 * 19 17 15 35 35 H 1.07997 * 126.58290 * 0.02562 * 23 22 20 36 36 H 1.08003 * 126.57493 * 180.23459 * 24 23 22 37 37 H 1.07996 * 125.79098 * 179.89019 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 7 3.9816 2.6797 0.0011 7 6 4.1764 3.3375 -1.1859 8 1 3.8514 4.3616 -1.2955 9 6 4.7919 2.6865 -2.2481 10 7 4.6955 3.1763 -3.4636 11 14 5.7563 1.1151 -1.9480 12 1 4.8841 -0.0583 -2.2080 13 1 6.9285 1.0721 -2.8587 14 1 6.2230 1.0823 -0.5386 15 6 4.1723 3.3256 1.1686 16 8 4.0981 2.7192 2.2163 17 6 4.4779 4.8013 1.1722 18 1 4.0993 5.3621 0.3175 19 6 5.8139 5.2449 1.7733 20 6 4.5092 5.5130 2.5262 21 1 4.3085 4.9139 3.4144 22 6 4.0144 6.9356 2.5762 23 6 2.9894 7.3861 3.3218 24 6 2.8766 8.7724 3.0679 25 6 3.8339 9.0845 2.1761 26 8 4.5221 7.9686 1.8843 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.9564 0.7806 -0.8892 31 1 3.9557 0.7809 0.8907 32 1 5.1255 2.7221 -4.2050 33 1 6.3143 6.0976 1.3141 34 1 6.4714 4.4696 2.1664 35 1 2.3739 6.8020 3.9899 36 1 2.1580 9.4503 3.5044 37 1 4.0206 10.0666 1.7675 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865977418.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:28 Heat of formation + Delta-G solvation = -54.953744 kcal Electronic energy + Delta-G solvation = -23555.018177 eV Core-core repulsion = 19880.501575 eV Total energy + Delta-G solvation = -3674.516601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.37599 -40.09621 -39.04531 -36.51535 -35.68030 -34.82344 -32.79315 -32.07919 -29.53596 -28.89588 -26.78140 -25.18497 -23.28349 -22.78690 -21.47890 -20.79100 -19.86249 -19.07172 -17.50855 -17.37040 -17.21535 -16.64431 -15.90874 -15.70797 -15.55169 -15.27947 -14.62424 -14.40906 -13.94004 -13.32490 -13.12945 -12.99619 -12.69604 -12.62104 -12.56367 -12.34993 -11.96380 -11.80356 -11.61987 -11.50652 -11.08444 -10.70794 -10.42274 -10.37026 -10.13907 -10.02756 -9.90709 -9.70273 -9.40532 -8.87166 -8.11058 -8.02743 -6.54943 -4.23237 1.86761 2.72326 2.79910 2.91935 2.95380 3.14064 3.15851 3.17492 3.50120 3.97982 4.09502 4.36731 4.83592 4.86602 5.12732 5.19337 5.26961 5.31347 5.37392 5.42198 5.46456 5.58511 5.62840 5.75879 5.80693 5.91612 5.96988 6.07481 6.10096 6.31987 6.38949 6.54795 6.67518 6.80494 7.10796 7.34896 7.91252 8.12245 8.34362 8.78379 9.13063 9.42029 10.55277 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.014799 B = 0.005304 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.526382 B = 5277.300651 C = 6253.164726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.448 3.552 4 O -0.487 6.487 5 C 0.108 3.892 6 N -0.445 5.445 7 C -0.340 4.340 8 H 0.109 0.891 9 C 0.066 3.934 10 N -0.857 5.857 11 Si 0.865 3.135 12 H -0.269 1.269 13 H -0.280 1.280 14 H -0.256 1.256 15 C 0.529 3.471 16 O -0.590 6.590 17 C -0.131 4.131 18 H 0.130 0.870 19 C -0.136 4.136 20 C -0.070 4.070 21 H 0.143 0.857 22 C 0.036 3.964 23 C -0.213 4.213 24 C -0.213 4.213 25 C -0.050 4.050 26 O -0.173 6.173 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.277 0.723 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 2.423 7.803 8.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.288 3.712 4 O -0.372 6.372 5 C -0.017 4.017 6 N -0.166 5.166 7 C -0.467 4.467 8 H 0.127 0.873 9 C -0.142 4.142 10 N -0.491 5.491 11 Si 0.692 3.308 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.179 1.179 15 C 0.319 3.681 16 O -0.474 6.474 17 C -0.152 4.152 18 H 0.148 0.852 19 C -0.174 4.174 20 C -0.088 4.088 21 H 0.160 0.840 22 C -0.015 4.015 23 C -0.232 4.232 24 C -0.232 4.232 25 C -0.118 4.118 26 O -0.069 6.069 27 H 0.079 0.921 28 H 0.113 0.887 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.133 0.867 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.164 0.836 36 H 0.163 0.837 37 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.600 2.397 7.879 8.389 hybrid contribution -0.169 -0.580 -0.250 0.654 sum -1.769 1.817 7.629 8.040 Atomic orbital electron populations 1.23147 0.77462 1.02879 1.02301 1.86521 1.22733 1.34443 1.84916 1.24720 0.92800 0.81262 0.72388 1.90624 1.66557 1.36220 1.43802 1.21364 0.86909 0.88469 1.04980 1.43247 1.58406 1.08310 1.06592 1.19103 1.39631 1.00169 0.87811 0.87338 1.25362 0.95805 0.98234 0.94786 1.69700 1.40312 1.40406 0.98725 0.87087 0.80787 0.82963 0.79953 1.19625 1.20661 1.17940 1.19376 0.77951 0.87802 0.82956 1.90548 1.56292 1.68514 1.32040 1.22170 1.02475 0.94105 0.96452 0.85173 1.22961 0.89810 1.03163 1.01450 1.20574 1.02811 0.87452 0.97996 0.83981 1.21517 0.96171 0.88260 0.95511 1.21493 1.01015 0.95150 1.05553 1.21774 1.02435 0.96204 1.02813 1.23941 0.95798 0.90191 1.01822 1.84000 1.50886 1.16218 1.55798 0.92148 0.88677 0.92307 0.87894 0.86703 0.91246 0.87644 0.87690 0.83576 0.83720 0.78337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.56 101.05 1.07 1.59 16 2 O -0.37 -6.85 10.57 -39.25 -0.41 -7.27 16 3 C 0.45 9.87 8.02 36.00 0.29 10.16 16 4 O -0.49 -12.02 16.18 -18.75 -0.30 -12.32 16 5 C 0.11 2.39 4.76 -5.20 -0.02 2.37 16 6 N -0.45 -10.78 1.65 -116.10 -0.19 -10.97 16 7 C -0.34 -8.84 9.13 -14.93 -0.14 -8.98 16 8 H 0.11 3.01 6.69 -52.49 -0.35 2.66 16 9 C 0.07 1.70 5.38 -17.47 -0.09 1.61 16 10 N -0.86 -23.31 13.96 55.50 0.77 -22.53 16 11 Si 0.87 19.24 24.76 -169.99 -4.21 15.03 16 12 H -0.27 -5.70 6.77 56.52 0.38 -5.31 16 13 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.26 -5.59 7.06 56.52 0.40 -5.19 16 15 C 0.53 12.27 7.40 -10.98 -0.08 12.19 16 16 O -0.59 -14.21 15.84 5.55 0.09 -14.12 16 17 C -0.13 -2.65 5.09 -91.73 -0.47 -3.11 16 18 H 0.13 2.77 6.64 -51.92 -0.34 2.42 16 19 C -0.14 -2.28 9.87 -26.70 -0.26 -2.55 16 20 C -0.07 -1.21 5.75 -91.77 -0.53 -1.73 16 21 H 0.14 2.42 7.69 -51.93 -0.40 2.02 16 22 C 0.04 0.59 6.80 -35.62 -0.24 0.35 16 23 C -0.21 -3.21 10.81 -39.70 -0.43 -3.64 16 24 C -0.21 -2.77 10.91 -39.70 -0.43 -3.21 16 25 C -0.05 -0.64 12.09 29.41 0.36 -0.28 16 26 O -0.17 -2.75 10.36 5.70 0.06 -2.69 16 27 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 30 H 0.10 2.26 3.16 -51.93 -0.16 2.09 16 31 H 0.12 2.35 7.35 -51.93 -0.38 1.97 16 32 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.11 1.62 7.96 -51.93 -0.41 1.21 16 34 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 35 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 36 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 325.35 15.07 4.90 4.90 Total: -1.00 -31.45 325.35 -4.45 -35.90 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -4.17 Total: 9.32 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -0.99 Total: 4.75 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 0.58 Total: -33.50 kcal Atomic # 8 Polarization: -35.83 SS G_CDS: -0.57 Total: -36.40 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.21 Total: 15.03 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.45 -4.45 -35.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865977418.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.052 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds