Wall clock time and date at job start Fri Apr 10 2020 17:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34230 * 116.99827 * 2 1 4 4 O 1.20831 * 119.99978 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00365 * 180.02562 * 3 2 1 6 6 C 1.50702 * 109.47266 * 180.02562 * 5 3 2 7 7 O 1.21277 * 119.99960 * 359.97438 * 6 5 3 8 8 N 1.34769 * 119.99776 * 180.02562 * 6 5 3 9 9 C 1.46508 * 120.00011 * 179.97438 * 8 6 5 10 10 C 1.50695 * 109.47103 * 179.97438 * 9 8 6 11 11 C 1.38299 * 119.93247 * 90.00118 * 10 9 8 12 12 C 1.38101 * 120.07425 * 179.97438 * 11 10 9 13 13 C 1.38886 * 119.92536 * 0.02562 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47264 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47375 * 119.99795 * 19 17 15 22 22 H 1.48506 * 109.47301 * 239.99793 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 H 1.09003 * 109.47325 * 299.99505 * 1 2 3 26 26 H 1.08994 * 109.47557 * 60.00212 * 1 2 3 27 27 H 1.09004 * 109.46704 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47278 * 59.99661 * 5 3 2 29 29 H 1.09005 * 109.46966 * 299.99861 * 5 3 2 30 30 H 0.97001 * 120.00514 * 359.97438 * 8 6 5 31 31 H 1.08998 * 109.46632 * 59.99915 * 9 8 6 32 32 H 1.08996 * 109.47144 * 299.99646 * 9 8 6 33 33 H 1.07999 * 119.96503 * 0.02562 * 11 10 9 34 34 H 1.07992 * 120.03608 * 180.02562 * 12 11 10 35 35 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 36 36 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 37 37 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 3.9934 2.7202 0.0002 7 8 3.1581 3.5995 0.0006 8 7 5.3037 3.0355 -0.0007 9 6 5.7191 4.4405 -0.0005 10 6 7.2240 4.5194 -0.0010 11 6 7.9127 4.5558 -1.1997 12 6 9.2918 4.6287 -1.2036 13 6 9.9871 4.6648 -0.0018 14 8 11.3427 4.7370 -0.0023 15 6 11.9473 4.8861 -1.1981 16 1 11.3627 4.8608 -2.1058 17 6 13.3199 5.0718 -1.2626 18 7 14.0321 5.1030 -0.1569 19 14 14.1575 5.2791 -2.9193 20 1 13.1417 5.2066 -4.0001 21 1 14.8392 6.5974 -2.9678 22 1 15.1576 4.1975 -3.1072 23 6 9.2930 4.6217 1.2003 24 6 7.9136 4.5547 1.1974 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.9557 0.7811 -0.8908 29 1 3.9564 0.7808 0.8892 30 1 5.9719 2.3323 -0.0014 31 1 5.3300 4.9342 0.8899 32 1 5.3288 4.9349 -0.8900 33 1 7.3715 4.5281 -2.1339 34 1 9.8290 4.6575 -2.1400 35 1 14.9924 5.2326 -0.2021 36 1 9.8311 4.6452 2.1364 37 1 7.3730 4.5256 2.1318 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906536780.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:35 Heat of formation + Delta-G solvation = -145.073853 kcal Electronic energy + Delta-G solvation = -21832.709673 eV Core-core repulsion = 18154.285171 eV Total energy + Delta-G solvation = -3678.424503 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72513 -40.88812 -40.20555 -38.48864 -37.36655 -35.59311 -34.27330 -32.61522 -31.81273 -30.96272 -28.40952 -27.58604 -26.13024 -23.63106 -22.92445 -22.08143 -21.25196 -19.86273 -18.91851 -18.83136 -17.99279 -17.71166 -17.38961 -16.61164 -16.53277 -16.26299 -16.05635 -15.71817 -15.49757 -15.09361 -14.63408 -14.43378 -14.35709 -14.29103 -14.11476 -13.67186 -13.37437 -13.03022 -12.91744 -12.89813 -12.55916 -12.33071 -12.23740 -12.08240 -11.75789 -11.61864 -11.18649 -10.88993 -10.72875 -10.04567 -9.79284 -8.99576 -8.47826 -6.15750 0.54789 0.59406 1.22212 1.36798 1.43291 1.54466 1.55341 1.65488 2.17483 2.45518 2.87059 3.17414 3.50416 3.53654 3.88194 4.04420 4.07576 4.19177 4.29304 4.33141 4.36990 4.42196 4.47839 4.58637 4.73421 4.79139 4.82657 5.05934 5.15741 5.28324 5.38951 5.45097 5.54404 5.70686 5.76688 6.02550 6.17565 6.59933 6.78381 6.97326 7.30433 7.76920 8.75185 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.037845 B = 0.002336 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.680419 B =11983.739058 C =12211.769639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.361 6.361 3 C 0.456 3.544 4 O -0.514 6.514 5 C -0.127 4.127 6 C 0.506 3.494 7 O -0.560 6.560 8 N -0.710 5.710 9 C 0.185 3.815 10 C -0.181 4.181 11 C -0.045 4.045 12 C -0.244 4.244 13 C 0.122 3.878 14 O -0.229 6.229 15 C -0.412 4.412 16 H 0.104 0.896 17 C -0.023 4.023 18 N -0.919 5.919 19 Si 1.018 2.982 20 H -0.250 1.250 21 H -0.271 1.271 22 H -0.269 1.269 23 C -0.204 4.204 24 C -0.043 4.043 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.135 0.865 28 H 0.172 0.828 29 H 0.172 0.828 30 H 0.416 0.584 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.139 0.861 34 H 0.120 0.880 35 H 0.273 0.727 36 H 0.115 0.885 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.299 -11.676 -1.487 23.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.278 6.278 3 C 0.298 3.702 4 O -0.401 6.401 5 C -0.167 4.167 6 C 0.292 3.708 7 O -0.438 6.438 8 N -0.363 5.363 9 C 0.062 3.938 10 C -0.182 4.182 11 C -0.063 4.063 12 C -0.263 4.263 13 C 0.071 3.929 14 O -0.136 6.136 15 C -0.488 4.488 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.557 5.557 19 Si 0.837 3.163 20 H -0.174 1.174 21 H -0.196 1.196 22 H -0.194 1.194 23 C -0.224 4.224 24 C -0.061 4.061 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.153 0.847 28 H 0.189 0.811 29 H 0.189 0.811 30 H 0.253 0.747 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.082 0.918 36 H 0.133 0.867 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -20.773 -10.720 -1.240 23.409 hybrid contribution 0.945 0.165 -0.466 1.067 sum -19.828 -10.555 -1.706 22.527 Atomic orbital electron populations 1.23502 0.75008 1.05650 1.02191 1.86472 1.24710 1.32410 1.84177 1.23584 0.92480 0.81373 0.72793 1.90830 1.67566 1.37227 1.44464 1.21316 0.88309 0.95304 1.11743 1.20488 0.82540 0.91284 0.76519 1.90862 1.52103 1.51157 1.49656 1.46030 1.06601 1.09035 1.74683 1.19839 0.89129 0.82461 1.02336 1.19465 0.94433 1.11387 0.92894 1.20939 0.92080 0.94904 0.98411 1.21246 0.95685 1.12021 0.97337 1.20009 0.84034 0.93439 0.95417 1.83948 1.15388 1.80604 1.33620 1.21867 0.91669 1.51612 0.83629 0.87852 1.26581 0.95961 0.95903 1.03625 1.70181 1.07552 1.48178 1.29769 0.84531 0.78243 0.78409 0.75068 1.17366 1.19617 1.19353 1.20451 0.94892 1.11662 0.95363 1.20882 0.91508 0.95178 0.98540 0.92422 0.92434 0.84716 0.81106 0.81051 0.74651 0.91165 0.91418 0.84278 0.86241 0.91829 0.86707 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.55 113.37 1.20 1.55 16 2 O -0.36 -5.65 10.57 -51.41 -0.54 -6.19 16 3 C 0.46 9.05 7.95 71.24 0.57 9.62 16 4 O -0.51 -15.56 13.93 29.70 0.41 -15.15 16 5 C -0.13 -1.50 6.30 29.10 0.18 -1.31 16 6 C 0.51 10.71 7.82 87.66 0.69 11.40 16 7 O -0.56 -18.38 14.19 20.42 0.29 -18.10 16 8 N -0.71 -12.92 5.55 -466.80 -2.59 -15.51 16 9 C 0.19 4.24 5.80 85.63 0.50 4.74 16 10 C -0.18 -4.89 5.25 -19.84 -0.10 -5.00 16 11 C -0.04 -1.37 9.69 22.25 0.22 -1.15 16 12 C -0.24 -9.72 9.17 22.39 0.21 -9.51 16 13 C 0.12 5.67 6.65 22.58 0.15 5.82 16 14 O -0.23 -13.22 9.76 -22.72 -0.22 -13.44 16 15 C -0.41 -23.06 9.49 67.92 0.64 -22.41 16 16 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 17 C -0.02 -1.27 5.49 84.84 0.47 -0.80 16 18 N -0.92 -55.03 13.67 21.62 0.30 -54.73 16 19 Si 1.02 41.56 29.55 68.60 2.03 43.58 16 20 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 21 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 C -0.20 -7.94 9.99 22.39 0.22 -7.72 16 24 C -0.04 -1.25 9.69 22.25 0.22 -1.04 16 25 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 26 H 0.06 0.75 8.13 -2.39 -0.02 0.73 16 27 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.17 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.17 0.76 8.14 -2.38 -0.02 0.75 16 30 H 0.42 5.49 8.46 -92.71 -0.78 4.71 16 31 H 0.07 1.66 8.08 -2.39 -0.02 1.64 16 32 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 33 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.12 4.91 5.64 -2.91 -0.02 4.89 16 35 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 36 H 0.11 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -81.96 331.03 5.14 -76.81 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.33 Total: 18.55 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 5.15 Total: -15.83 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -2.29 Total: -70.24 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -0.06 Total: -52.88 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -81.96 5.14 -76.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906536780.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.262 kcal (2) G-P(sol) polarization free energy of solvation -81.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds