Wall clock time and date at job start Fri Apr 10 2020 17:35:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00142 * 2 1 4 4 O 1.20828 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00288 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.47328 * 179.97438 * 5 3 2 7 7 C 1.46510 * 119.99697 * 269.99799 * 6 5 3 8 8 C 1.34771 * 120.00400 * 89.99905 * 6 5 3 9 9 O 1.21591 * 119.99655 * 355.04243 * 8 6 5 10 10 C 1.47529 * 120.00282 * 175.04544 * 8 6 5 11 11 C 1.39669 * 120.19481 * 316.65962 * 10 8 6 12 12 C 1.37833 * 119.91492 * 179.97438 * 11 10 8 13 13 C 1.38567 * 120.32711 * 0.02562 * 12 11 10 14 14 C 1.38027 * 120.40010 * 0.02562 * 13 12 11 15 15 C 1.38830 * 120.07497 * 359.97438 * 14 13 12 16 16 O 1.35521 * 120.16372 * 180.02562 * 15 14 13 17 17 C 1.34814 * 116.99761 * 354.77096 * 16 15 14 18 18 H 1.07997 * 120.00321 * 4.09263 * 17 16 15 19 19 C 1.38695 * 119.99882 * 184.10021 * 17 16 15 20 20 N 1.31520 * 119.99988 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00328 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46681 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47148 * 119.99431 * 21 19 17 24 24 H 1.48490 * 109.47310 * 239.99969 * 21 19 17 25 25 H 1.08997 * 109.47433 * 300.00193 * 1 2 3 26 26 H 1.09000 * 109.46607 * 60.00439 * 1 2 3 27 27 H 1.09004 * 109.46727 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47356 * 59.99720 * 5 3 2 29 29 H 1.09003 * 109.47442 * 299.99505 * 5 3 2 30 30 H 1.08998 * 109.46935 * 266.53642 * 7 6 5 31 31 H 1.09003 * 109.46802 * 26.53542 * 7 6 5 32 32 H 1.09002 * 109.46587 * 146.53602 * 7 6 5 33 33 H 1.07997 * 120.03998 * 0.25039 * 11 10 8 34 34 H 1.08003 * 119.83077 * 180.02562 * 12 11 10 35 35 H 1.08004 * 119.79983 * 179.97438 * 13 12 11 36 36 H 1.08004 * 119.95937 * 179.97438 * 14 13 12 37 37 H 0.96998 * 119.99963 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 7 3.9817 2.6797 -0.0011 7 6 4.1890 3.3818 -1.2702 8 6 4.1732 3.3263 1.1658 9 8 3.9149 2.7726 2.2171 10 6 4.6962 4.7058 1.1676 11 6 5.7548 5.0568 0.3269 12 6 6.2385 6.3475 0.3329 13 6 5.6800 7.3001 1.1700 14 6 4.6341 6.9674 2.0070 15 6 4.1339 5.6724 2.0145 16 8 3.1066 5.3439 2.8351 17 6 2.6857 6.2906 3.6978 18 1 3.1188 7.2795 3.6679 19 6 1.6965 5.9945 4.6238 20 7 1.1688 4.7904 4.6600 21 14 1.1137 7.3060 5.8196 22 1 1.8606 8.5660 5.5748 23 1 -0.3387 7.5448 5.6230 24 1 1.3564 6.8496 7.2116 25 1 -0.3634 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.9557 0.7809 -0.8908 29 1 3.9565 0.7806 0.8892 30 1 5.2393 3.3167 -1.5541 31 1 3.5741 2.9224 -2.0442 32 1 3.9076 4.4287 -1.1563 33 1 6.1908 4.3190 -0.3303 34 1 7.0569 6.6175 -0.3180 35 1 6.0660 8.3088 1.1681 36 1 4.2044 7.7155 2.6568 37 1 0.4768 4.5834 5.3074 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919809436.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:58 Heat of formation + Delta-G solvation = -100.049236 kcal Electronic energy + Delta-G solvation = -23794.397468 eV Core-core repulsion = 20117.925379 eV Total energy + Delta-G solvation = -3676.472089 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 293.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.40731 -39.56897 -38.21422 -36.38175 -36.20469 -34.89098 -32.33234 -31.03977 -29.13099 -28.92210 -27.14438 -26.01309 -25.35777 -22.82901 -21.61951 -20.94127 -19.18510 -18.05010 -17.56084 -17.26941 -16.59644 -16.45967 -15.94536 -15.51072 -14.79114 -14.68373 -14.16763 -14.07124 -13.76159 -13.60369 -13.31605 -13.08241 -12.80947 -12.55137 -12.39150 -12.20359 -11.95888 -11.77418 -11.68973 -11.31181 -11.09174 -10.89833 -10.71342 -10.61096 -10.42735 -10.33684 -9.59970 -9.07058 -8.86698 -8.45788 -8.23971 -7.31562 -6.43606 -4.03725 1.78567 2.31691 2.47752 2.66633 3.12475 3.13738 3.19418 3.44433 3.58301 3.94547 4.53140 4.91347 5.01500 5.06594 5.16698 5.21388 5.28516 5.30449 5.32263 5.45837 5.54162 5.63561 5.71497 5.77512 5.94600 6.00887 6.15978 6.52455 6.57676 6.62194 6.75689 6.95127 7.05352 7.24720 7.29691 7.69330 7.73674 7.96179 8.01420 8.83763 8.97426 9.66664 10.71364 Molecular weight = 293.11amu Principal moments of inertia in cm(-1) A = 0.011883 B = 0.006445 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2355.744416 B = 4343.228905 C = 6340.947314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.435 3.565 4 O -0.483 6.483 5 C 0.133 3.867 6 N -0.612 5.612 7 C 0.087 3.913 8 C 0.577 3.423 9 O -0.506 6.506 10 C -0.220 4.220 11 C -0.041 4.041 12 C -0.228 4.228 13 C -0.052 4.052 14 C -0.236 4.236 15 C 0.190 3.810 16 O -0.142 6.142 17 C -0.400 4.400 18 H 0.095 0.905 19 C 0.043 3.957 20 N -0.839 5.839 21 Si 0.942 3.058 22 H -0.265 1.265 23 H -0.275 1.275 24 H -0.274 1.274 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.123 0.877 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.132 0.868 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -4.852 -12.048 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.275 3.725 4 O -0.367 6.367 5 C 0.007 3.993 6 N -0.348 5.348 7 C -0.056 4.056 8 C 0.368 3.632 9 O -0.380 6.380 10 C -0.224 4.224 11 C -0.059 4.059 12 C -0.247 4.247 13 C -0.071 4.071 14 C -0.255 4.255 15 C 0.131 3.869 16 O -0.041 6.041 17 C -0.475 4.475 18 H 0.113 0.887 19 C -0.164 4.164 20 N -0.471 5.471 21 Si 0.767 3.233 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.200 1.200 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.141 0.859 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.149 0.851 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.178 -5.183 -11.255 13.076 hybrid contribution -0.645 0.823 0.505 1.161 sum 3.533 -4.359 -10.750 12.126 Atomic orbital electron populations 1.23205 0.76673 1.03169 1.02681 1.86459 1.23281 1.33857 1.84732 1.24643 0.93082 0.81608 0.73196 1.90744 1.66641 1.36189 1.43120 1.20755 0.86908 0.85246 1.06381 1.47510 1.69480 1.10464 1.07339 1.21879 1.00382 0.98844 0.84487 1.18315 0.76532 0.85893 0.82482 1.90831 1.49141 1.67178 1.30806 1.18615 1.04617 0.92508 1.06701 1.20866 0.93931 0.96026 0.95105 1.20468 1.04863 0.93850 1.05519 1.20895 0.94213 0.98226 0.93764 1.21132 1.02099 0.96766 1.05536 1.19195 0.87020 0.91492 0.89160 1.84046 1.39119 1.39912 1.41040 1.21479 1.21269 0.92537 1.12248 0.88726 1.25387 0.95970 0.97558 0.97494 1.70116 1.24130 1.19108 1.33730 0.85636 0.78800 0.79444 0.79448 1.18934 1.20068 1.19990 0.91702 0.92237 0.88405 0.86607 0.85917 0.92441 0.91887 0.90217 0.86369 0.87173 0.87164 0.85057 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.56 101.05 1.07 1.53 16 2 O -0.37 -5.49 10.56 -39.24 -0.41 -5.90 16 3 C 0.44 7.61 8.02 36.00 0.29 7.90 16 4 O -0.48 -10.63 16.18 -18.75 -0.30 -10.93 16 5 C 0.13 1.93 5.95 -5.19 -0.03 1.90 16 6 N -0.61 -10.59 2.36 -184.18 -0.44 -11.03 16 7 C 0.09 1.14 8.98 59.85 0.54 1.68 16 8 C 0.58 13.11 7.05 -12.48 -0.09 13.02 16 9 O -0.51 -13.88 15.92 -8.60 -0.14 -14.01 16 10 C -0.22 -4.87 4.91 -104.81 -0.52 -5.38 16 11 C -0.04 -0.70 7.92 -39.20 -0.31 -1.01 16 12 C -0.23 -3.70 10.02 -39.61 -0.40 -4.10 16 13 C -0.05 -0.93 10.03 -39.54 -0.40 -1.32 16 14 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 15 C 0.19 4.81 6.63 -38.60 -0.26 4.56 16 16 O -0.14 -4.30 8.64 -13.09 -0.11 -4.42 16 17 C -0.40 -11.59 9.49 30.90 0.29 -11.29 16 18 H 0.10 2.49 5.20 -52.49 -0.27 2.21 16 19 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 20 N -0.84 -26.01 13.67 55.48 0.76 -25.25 16 21 Si 0.94 21.06 29.55 -169.99 -5.02 16.04 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 26 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.12 1.08 8.07 -51.93 -0.42 0.66 16 29 H 0.12 1.82 7.50 -51.93 -0.39 1.43 16 30 H 0.06 0.57 6.76 -51.93 -0.35 0.22 16 31 H 0.06 0.69 8.05 -51.93 -0.42 0.28 16 32 H 0.08 1.19 6.62 -51.93 -0.34 0.85 16 33 H 0.12 1.62 6.09 -52.49 -0.32 1.30 16 34 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.13 2.83 5.64 -52.48 -0.30 2.54 16 37 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -38.62 325.17 -5.09 -43.71 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.06 Total: 3.78 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -0.26 Total: 3.11 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.32 Total: -36.28 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.97 Total: -35.26 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -38.62 -5.09 -43.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919809436.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.337 kcal (2) G-P(sol) polarization free energy of solvation -38.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds