Wall clock time and date at job start Fri Apr 10 2020 17:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35132 * 125.54684 * 2 1 4 4 C 1.40980 * 108.23579 * 180.15487 * 3 2 1 5 5 N 1.33310 * 126.35429 * 179.86633 * 4 3 2 6 6 C 1.32908 * 120.00086 * 359.68880 * 5 4 3 7 7 O 1.21597 * 119.99640 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99882 * 179.97438 * 6 5 4 9 9 H 1.09002 * 110.43626 * 57.45756 * 8 6 5 10 10 C 1.54805 * 110.49114 * 294.76422 * 8 6 5 11 11 C 1.54993 * 102.09764 * 262.20549 * 10 8 6 12 12 O 1.44382 * 103.48614 * 322.97979 * 11 10 8 13 13 C 1.43741 * 106.98021 * 40.05788 * 12 11 10 14 14 H 1.09002 * 109.87947 * 92.90991 * 13 12 11 15 15 C 1.52998 * 110.00290 * 213.99181 * 13 12 11 16 16 N 1.37287 * 107.28948 * 359.60132 * 4 3 2 17 17 H 0.96994 * 126.34753 * 180.24143 * 16 4 3 18 18 N 1.36333 * 125.55330 * 179.71334 * 2 1 3 19 19 C 1.46495 * 125.86423 * 0.03455 * 18 2 1 20 20 C 1.50697 * 109.47583 * 84.97987 * 19 18 2 21 21 H 1.08003 * 119.99508 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00355 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99765 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00176 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47131 * 59.99643 * 24 22 20 26 26 H 1.48504 * 109.47124 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46899 * 299.99786 * 24 22 20 28 28 H 1.09003 * 109.46434 * 270.28531 * 1 2 3 29 29 H 1.08997 * 109.47085 * 30.28921 * 1 2 3 30 30 H 1.09003 * 109.46846 * 150.29132 * 1 2 3 31 31 H 1.08000 * 125.88390 * 0.02562 * 3 2 1 32 32 H 1.09004 * 110.90856 * 20.40875 * 10 8 6 33 33 H 1.09008 * 110.90524 * 144.00628 * 10 8 6 34 34 H 1.09000 * 110.61715 * 81.47543 * 11 10 8 35 35 H 1.08999 * 110.61939 * 204.47512 * 11 10 8 36 36 H 1.09003 * 109.46790 * 178.20789 * 15 13 12 37 37 H 1.08999 * 109.47529 * 298.21110 * 15 13 12 38 38 H 1.08998 * 109.47103 * 58.21485 * 15 13 12 39 39 H 1.08998 * 109.47507 * 204.98525 * 19 18 2 40 40 H 1.09002 * 109.46898 * 324.98323 * 19 18 2 41 41 H 0.97001 * 119.99874 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0995 0.0000 4 6 3.6386 0.6800 -0.0036 5 7 4.7125 1.4699 -0.0072 6 6 4.5658 2.7908 -0.0139 7 8 3.4521 3.2788 -0.0172 8 6 5.7798 3.6836 -0.0175 9 1 6.4126 3.4622 -0.8769 10 6 6.5753 3.5220 1.3007 11 6 6.0712 4.7275 2.1343 12 8 5.9156 5.7744 1.1522 13 6 5.3590 5.1661 -0.0252 14 1 4.2719 5.2429 -0.0035 15 6 5.9040 5.8551 -1.2778 16 7 3.6381 -0.6929 0.0033 17 1 4.4191 -1.2680 0.0062 18 7 2.2998 -1.1092 0.0055 19 6 1.8329 -2.4977 0.0118 20 6 1.5557 -2.9409 -1.4016 21 1 1.7120 -2.2567 -2.2225 22 6 1.1024 -4.2197 -1.6468 23 7 0.9125 -5.0530 -0.6472 24 14 0.7594 -4.7693 -3.3988 25 1 2.0049 -4.6700 -4.2016 26 1 0.2861 -6.1769 -3.3924 27 1 -0.2848 -3.8981 -3.9954 28 1 -0.3632 0.0051 1.0277 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9487 2.1233 0.0004 32 1 6.3288 2.5800 1.7907 33 1 7.6476 3.5956 1.1194 34 1 5.1150 4.4965 2.6038 35 1 6.8096 5.0113 2.8842 36 1 5.5014 5.3669 -2.1653 37 1 5.6073 6.9039 -1.2739 38 1 6.9917 5.7853 -1.2867 39 1 2.5998 -3.1370 0.4492 40 1 0.9191 -2.5711 0.6014 41 1 0.5940 -5.9528 -0.8197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355956086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:14 Heat of formation + Delta-G solvation = 7.557018 kcal Electronic energy + Delta-G solvation = -23393.064534 eV Core-core repulsion = 19889.384449 eV Total energy + Delta-G solvation = -3503.680086 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.04247 -39.86603 -37.77738 -34.42381 -33.20800 -32.34544 -32.28480 -31.37699 -30.57929 -27.61852 -27.09390 -26.08290 -23.46817 -22.38281 -22.02880 -20.69819 -19.74876 -18.92144 -17.19117 -16.83228 -16.24138 -15.82992 -15.76102 -15.13643 -15.00624 -14.92760 -14.26681 -13.93224 -13.67600 -13.08425 -12.99006 -12.85645 -12.81149 -12.55758 -12.41060 -12.22870 -12.05619 -11.88738 -11.45298 -11.40591 -11.10600 -11.07571 -10.82789 -10.66451 -10.56581 -10.41998 -9.54374 -9.52165 -9.28612 -8.97257 -8.93988 -8.36947 -7.05119 -6.55990 -4.71887 1.55498 1.96793 2.87417 3.03252 3.09349 3.12419 3.97526 4.00755 4.13602 4.20188 4.64765 4.75943 4.90100 4.95525 5.00510 5.14940 5.42361 5.43943 5.50442 5.53075 5.65502 5.71406 5.79020 5.85242 5.89015 6.01536 6.06140 6.14011 6.18576 6.21512 6.36366 6.42492 6.46599 6.52690 6.70576 7.04831 7.31558 7.41591 7.45527 7.57475 7.89972 8.25563 8.37289 8.99050 9.30378 10.46952 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.030387 B = 0.003118 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.228316 B = 8978.165656 C = 9039.532619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.191 3.809 3 C -0.333 4.333 4 C 0.470 3.530 5 N -0.700 5.700 6 C 0.501 3.499 7 O -0.585 6.585 8 C -0.113 4.113 9 H 0.101 0.899 10 C -0.135 4.135 11 C 0.047 3.953 12 O -0.379 6.379 13 C 0.074 3.926 14 H 0.093 0.907 15 C -0.146 4.146 16 N -0.465 5.465 17 H 0.445 0.555 18 N -0.337 5.337 19 C 0.253 3.747 20 C -0.559 4.559 21 H 0.069 0.931 22 C 0.072 3.928 23 N -0.886 5.886 24 Si 0.909 3.091 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.184 0.816 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.560 10.150 2.863 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.064 3.936 3 C -0.365 4.365 4 C 0.222 3.778 5 N -0.465 5.465 6 C 0.286 3.714 7 O -0.467 6.467 8 C -0.134 4.134 9 H 0.120 0.880 10 C -0.173 4.173 11 C -0.030 4.030 12 O -0.299 6.299 13 C 0.016 3.984 14 H 0.110 0.890 15 C -0.204 4.204 16 N -0.186 5.186 17 H 0.293 0.707 18 N -0.123 5.123 19 C 0.137 3.863 20 C -0.597 4.597 21 H 0.087 0.913 22 C -0.134 4.134 23 N -0.522 5.522 24 Si 0.736 3.264 25 H -0.198 1.198 26 H -0.207 1.207 27 H -0.196 1.196 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.200 0.800 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.787 9.752 2.943 11.256 hybrid contribution -0.242 -0.905 -0.993 1.365 sum 4.545 8.847 1.950 10.136 Atomic orbital electron populations 1.20667 0.86291 1.05142 1.03701 1.21394 0.94589 0.85559 0.92097 1.22275 0.91189 1.00321 1.22716 1.19218 0.91750 0.82104 0.84773 1.68695 1.27998 1.05306 1.44454 1.20427 0.88636 0.86517 0.75839 1.90512 1.27140 1.78957 1.50140 1.22218 0.96589 0.94328 1.00305 0.88046 1.22988 0.99899 0.99723 0.94673 1.23536 1.00322 0.87105 0.92039 1.88802 1.84701 1.32437 1.23945 1.22842 0.99651 0.90009 0.85866 0.88968 1.21889 1.01309 1.00921 0.96232 1.44544 0.98946 1.05278 1.69868 0.70725 1.47979 0.92747 1.08310 1.63238 1.20066 0.96544 0.70069 0.99617 1.21331 1.48000 0.98816 0.91565 0.91293 1.24944 0.94176 0.95762 0.98486 1.69885 1.43773 1.07111 1.31432 0.86350 0.79182 0.77888 0.83011 1.19828 1.20747 1.19601 0.89752 0.89254 0.88939 0.79957 0.89375 0.90396 0.92332 0.89276 0.91361 0.92097 0.92287 0.93046 0.91357 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 9.92 36.01 0.36 -1.01 16 2 C 0.19 3.32 6.93 -81.69 -0.57 2.76 16 3 C -0.33 -6.27 9.41 -39.65 -0.37 -6.65 16 4 C 0.47 9.07 8.07 -155.18 -1.25 7.82 16 5 N -0.70 -13.53 10.35 -11.59 -0.12 -13.65 16 6 C 0.50 9.48 6.94 -11.81 -0.08 9.40 16 7 O -0.58 -12.20 12.16 5.28 0.06 -12.14 16 8 C -0.11 -1.73 3.15 -90.25 -0.28 -2.01 16 9 H 0.10 1.46 7.70 -51.93 -0.40 1.06 16 10 C -0.13 -1.78 6.69 -24.73 -0.17 -1.95 16 11 C 0.05 0.61 7.72 38.21 0.29 0.90 16 12 O -0.38 -5.73 11.19 -35.23 -0.39 -6.12 16 13 C 0.07 1.11 3.66 -26.16 -0.10 1.01 16 14 H 0.09 1.58 6.43 -51.93 -0.33 1.25 16 15 C -0.15 -1.79 9.37 37.16 0.35 -1.44 16 16 N -0.47 -8.28 7.37 31.32 0.23 -8.05 16 17 H 0.45 6.93 8.96 -182.56 -1.64 5.30 16 18 N -0.34 -6.26 3.63 -58.03 -0.21 -6.47 16 19 C 0.25 5.20 5.71 -5.20 -0.03 5.17 16 20 C -0.56 -12.99 9.39 -34.44 -0.32 -13.32 16 21 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 22 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -22.01 13.29 55.43 0.74 -21.27 16 24 Si 0.91 18.87 29.54 -169.99 -5.02 13.85 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 27 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.09 1.36 7.80 -51.93 -0.40 0.96 16 31 H 0.18 3.58 5.77 -52.49 -0.30 3.27 16 32 H 0.09 1.23 7.73 -51.93 -0.40 0.83 16 33 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.41 7.88 -51.93 -0.41 1.00 16 41 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -28.11 342.93 -9.05 -37.16 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.24 Total: 9.23 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -2.27 Total: 2.29 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.64 Total: -49.45 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.33 Total: -18.26 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.11 -9.05 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355956086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.720 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds