Wall clock time and date at job start Fri Apr 10 2020 17:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35132 * 125.54684 * 2 1 4 4 C 1.40980 * 108.23579 * 180.15487 * 3 2 1 5 5 N 1.33310 * 126.35429 * 179.86633 * 4 3 2 6 6 C 1.32908 * 120.00086 * 359.68880 * 5 4 3 7 7 O 1.21597 * 119.99640 * 359.97438 * 6 5 4 8 8 C 1.50697 * 119.99882 * 179.97438 * 6 5 4 9 9 H 1.09002 * 110.43626 * 57.45756 * 8 6 5 10 10 C 1.54805 * 110.49114 * 294.76422 * 8 6 5 11 11 C 1.54993 * 102.09764 * 262.20549 * 10 8 6 12 12 O 1.44382 * 103.48614 * 322.97979 * 11 10 8 13 13 C 1.43741 * 106.98021 * 40.05788 * 12 11 10 14 14 H 1.09002 * 109.87947 * 92.90991 * 13 12 11 15 15 C 1.52998 * 110.00290 * 213.99181 * 13 12 11 16 16 N 1.37287 * 107.28948 * 359.60132 * 4 3 2 17 17 H 0.96994 * 126.34753 * 180.24143 * 16 4 3 18 18 N 1.36333 * 125.55330 * 179.71334 * 2 1 3 19 19 C 1.46495 * 125.86423 * 0.03455 * 18 2 1 20 20 C 1.50697 * 109.47583 * 84.97987 * 19 18 2 21 21 H 1.08003 * 119.99508 * 0.02562 * 20 19 18 22 22 C 1.37873 * 120.00355 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99765 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00176 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47131 * 59.99643 * 24 22 20 26 26 H 1.48504 * 109.47124 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46899 * 299.99786 * 24 22 20 28 28 H 1.09003 * 109.46434 * 270.28531 * 1 2 3 29 29 H 1.08997 * 109.47085 * 30.28921 * 1 2 3 30 30 H 1.09003 * 109.46846 * 150.29132 * 1 2 3 31 31 H 1.08000 * 125.88390 * 0.02562 * 3 2 1 32 32 H 1.09004 * 110.90856 * 20.40875 * 10 8 6 33 33 H 1.09008 * 110.90524 * 144.00628 * 10 8 6 34 34 H 1.09000 * 110.61715 * 81.47543 * 11 10 8 35 35 H 1.08999 * 110.61939 * 204.47512 * 11 10 8 36 36 H 1.09003 * 109.46790 * 178.20789 * 15 13 12 37 37 H 1.08999 * 109.47529 * 298.21110 * 15 13 12 38 38 H 1.08998 * 109.47103 * 58.21485 * 15 13 12 39 39 H 1.08998 * 109.47507 * 204.98525 * 19 18 2 40 40 H 1.09002 * 109.46898 * 324.98323 * 19 18 2 41 41 H 0.97001 * 119.99874 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0995 0.0000 4 6 3.6386 0.6800 -0.0036 5 7 4.7125 1.4699 -0.0072 6 6 4.5658 2.7908 -0.0139 7 8 3.4521 3.2788 -0.0172 8 6 5.7798 3.6836 -0.0175 9 1 6.4126 3.4622 -0.8769 10 6 6.5753 3.5220 1.3007 11 6 6.0712 4.7275 2.1343 12 8 5.9156 5.7744 1.1522 13 6 5.3590 5.1661 -0.0252 14 1 4.2719 5.2429 -0.0035 15 6 5.9040 5.8551 -1.2778 16 7 3.6381 -0.6929 0.0033 17 1 4.4191 -1.2680 0.0062 18 7 2.2998 -1.1092 0.0055 19 6 1.8329 -2.4977 0.0118 20 6 1.5557 -2.9409 -1.4016 21 1 1.7120 -2.2567 -2.2225 22 6 1.1024 -4.2197 -1.6468 23 7 0.9125 -5.0530 -0.6472 24 14 0.7594 -4.7693 -3.3988 25 1 2.0049 -4.6700 -4.2016 26 1 0.2861 -6.1769 -3.3924 27 1 -0.2848 -3.8981 -3.9954 28 1 -0.3632 0.0051 1.0277 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3633 -0.8926 -0.5093 31 1 1.9487 2.1233 0.0004 32 1 6.3288 2.5800 1.7907 33 1 7.6476 3.5956 1.1194 34 1 5.1150 4.4965 2.6038 35 1 6.8096 5.0113 2.8842 36 1 5.5014 5.3669 -2.1653 37 1 5.6073 6.9039 -1.2739 38 1 6.9917 5.7853 -1.2867 39 1 2.5998 -3.1370 0.4492 40 1 0.9191 -2.5711 0.6014 41 1 0.5940 -5.9528 -0.8197 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355956086.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:13 Heat of formation + Delta-G solvation = -9.876191 kcal Electronic energy + Delta-G solvation = -23393.820495 eV Core-core repulsion = 19889.384449 eV Total energy + Delta-G solvation = -3504.436046 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.50571 -41.11929 -39.14137 -36.04918 -34.82555 -33.74938 -33.50878 -32.55272 -32.03938 -28.88620 -28.67076 -27.31287 -25.07815 -23.77268 -23.16031 -22.00602 -21.13906 -20.29645 -18.92935 -18.39422 -17.54491 -17.19487 -16.95122 -16.68518 -16.46091 -16.19147 -15.74995 -15.25401 -15.08711 -14.43459 -14.36575 -14.25384 -14.08134 -13.79502 -13.70696 -13.45195 -13.25044 -13.22455 -12.96289 -12.74087 -12.62454 -12.31114 -12.17666 -12.09242 -11.90604 -11.75526 -11.12828 -10.82925 -10.77189 -10.62655 -10.36517 -9.86775 -8.64639 -8.31186 -6.58353 0.09432 0.50459 1.38649 1.40442 1.43258 1.48899 2.28988 2.65752 2.77923 2.91597 2.93626 3.36915 3.64137 3.72766 3.87002 4.09471 4.18366 4.25015 4.30046 4.36762 4.48612 4.68182 4.72653 4.75430 4.78709 4.80179 4.87280 4.89231 4.92078 5.04968 5.09361 5.13442 5.15325 5.28631 5.29273 5.48699 5.67325 5.89828 5.97238 6.08708 6.39002 6.58823 6.80749 7.15513 7.81837 8.64488 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.030387 B = 0.003118 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.228316 B = 8978.165656 C = 9039.532619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.199 3.801 3 C -0.347 4.347 4 C 0.455 3.545 5 N -0.706 5.706 6 C 0.489 3.511 7 O -0.611 6.611 8 C -0.112 4.112 9 H 0.114 0.886 10 C -0.128 4.128 11 C 0.044 3.956 12 O -0.388 6.388 13 C 0.074 3.926 14 H 0.063 0.937 15 C -0.141 4.141 16 N -0.461 5.461 17 H 0.453 0.547 18 N -0.343 5.343 19 C 0.267 3.733 20 C -0.565 4.565 21 H 0.058 0.942 22 C 0.034 3.966 23 N -0.911 5.911 24 Si 0.961 3.039 25 H -0.277 1.277 26 H -0.279 1.279 27 H -0.267 1.267 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.175 0.825 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.043 0.957 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 10.552 2.587 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.072 3.928 3 C -0.378 4.378 4 C 0.207 3.793 5 N -0.470 5.470 6 C 0.275 3.725 7 O -0.495 6.495 8 C -0.134 4.134 9 H 0.132 0.868 10 C -0.166 4.166 11 C -0.032 4.032 12 O -0.308 6.308 13 C 0.016 3.984 14 H 0.081 0.919 15 C -0.198 4.198 16 N -0.183 5.183 17 H 0.302 0.698 18 N -0.129 5.129 19 C 0.150 3.850 20 C -0.603 4.603 21 H 0.076 0.924 22 C -0.169 4.169 23 N -0.549 5.549 24 Si 0.786 3.214 25 H -0.202 1.202 26 H -0.204 1.204 27 H -0.191 1.191 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.192 0.808 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.062 0.938 35 H 0.138 0.862 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.089 0.911 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.328 10.157 2.672 11.777 hybrid contribution -0.419 -1.005 -0.868 1.392 sum 4.909 9.152 1.803 10.541 Atomic orbital electron populations 1.20839 0.83580 1.05660 1.05484 1.21935 0.96109 0.84538 0.90243 1.22204 0.91414 1.00333 1.23898 1.19450 0.92230 0.82583 0.85050 1.68786 1.28040 1.05584 1.44629 1.21111 0.89543 0.86722 0.75086 1.90496 1.28470 1.79304 1.51268 1.22267 0.95410 0.93700 1.02002 0.86814 1.22994 1.01040 0.99268 0.93282 1.23680 1.00548 0.86775 0.92225 1.88793 1.84505 1.33236 1.24284 1.22782 0.98242 0.90210 0.87144 0.91873 1.21859 1.02145 1.01038 0.94787 1.44523 0.99021 1.04999 1.69758 0.69782 1.47877 0.93256 1.08095 1.63662 1.19757 0.96317 0.70719 0.98240 1.21488 1.47641 0.98727 0.92452 0.92406 1.25560 0.94105 0.95903 1.01318 1.69948 1.44668 1.07410 1.32832 0.85539 0.78793 0.77606 0.79431 1.20193 1.20413 1.19139 0.87237 0.87168 0.89807 0.80798 0.90324 0.87796 0.93834 0.86154 0.91081 0.91368 0.90776 0.93850 0.91130 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.92 71.24 0.71 -1.80 16 2 C 0.20 6.78 6.93 41.14 0.29 7.06 16 3 C -0.35 -13.08 9.41 22.23 0.21 -12.87 16 4 C 0.46 17.62 8.07 133.82 1.08 18.70 16 5 N -0.71 -27.31 10.35 -309.87 -3.21 -30.51 16 6 C 0.49 18.62 6.94 87.95 0.61 19.23 16 7 O -0.61 -26.06 12.16 -4.02 -0.05 -26.11 16 8 C -0.11 -3.35 3.15 -10.55 -0.03 -3.39 16 9 H 0.11 3.09 7.70 -2.39 -0.02 3.07 16 10 C -0.13 -3.18 6.69 31.89 0.21 -2.97 16 11 C 0.04 1.08 7.72 72.66 0.56 1.64 16 12 O -0.39 -11.24 11.19 -148.98 -1.67 -12.90 16 13 C 0.07 2.17 3.66 30.97 0.11 2.29 16 14 H 0.06 2.22 6.43 -2.39 -0.02 2.21 16 15 C -0.14 -3.24 9.37 71.98 0.67 -2.57 16 16 N -0.46 -16.34 7.37 -54.81 -0.40 -16.75 16 17 H 0.45 14.06 8.96 -213.29 -1.91 12.15 16 18 N -0.34 -12.61 3.63 -337.51 -1.23 -13.83 16 19 C 0.27 10.84 5.71 85.63 0.49 11.32 16 20 C -0.57 -25.97 9.39 25.60 0.24 -25.73 16 21 H 0.06 2.76 7.81 -2.91 -0.02 2.73 16 22 C 0.03 1.59 5.46 84.65 0.46 2.05 16 23 N -0.91 -44.80 13.29 21.45 0.28 -44.52 16 24 Si 0.96 38.02 29.54 68.60 2.03 40.04 16 25 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.28 -10.82 7.11 99.48 0.71 -10.11 16 27 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 28 H 0.11 2.29 8.14 -2.39 -0.02 2.28 16 29 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.08 2.35 7.80 -2.39 -0.02 2.33 16 31 H 0.17 6.93 5.77 -2.91 -0.02 6.91 16 32 H 0.08 2.12 7.73 -2.38 -0.02 2.10 16 33 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.56 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.86 7.88 -2.39 -0.02 2.85 16 41 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 Total: -1.00 -59.38 342.93 0.51 -58.87 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: -0.87 Total: 32.74 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 5.61 Total: 12.97 kcal Atomic # 7 Polarization: -101.06 SS G_CDS: -4.55 Total: -105.61 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.72 Total: -39.02 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.04 kcal Total: -59.38 0.51 -58.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355956086.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.994 kcal (2) G-P(sol) polarization free energy of solvation -59.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds