Wall clock time and date at job start Fri Apr 10 2020 17:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41260 * 126.70949 * 2 1 4 4 C 1.36824 * 103.84596 * 180.27650 * 3 2 1 5 5 C 1.47511 * 126.94320 * 179.73653 * 4 3 2 6 6 O 1.21589 * 119.99826 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00311 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00008 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46614 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.50155 * 305.06495 * 9 8 7 11 11 C 1.53049 * 109.49582 * 185.00364 * 9 8 7 12 12 C 1.53045 * 109.53596 * 178.68603 * 11 9 8 13 13 C 1.53185 * 109.31224 * 61.36358 * 12 11 9 14 14 N 1.46929 * 108.77971 * 305.36084 * 13 12 11 15 15 C 1.36929 * 120.63096 * 233.58990 * 14 13 12 16 16 H 1.08009 * 119.99867 * 151.82995 * 15 14 13 17 17 C 1.38808 * 120.00459 * 331.83065 * 15 14 13 18 18 N 1.31618 * 119.99891 * 343.08505 * 17 15 14 19 19 Si 1.86803 * 120.00407 * 163.08552 * 17 15 14 20 20 H 1.48503 * 109.46868 * 59.99777 * 19 17 15 21 21 H 1.48496 * 109.47447 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46836 * 299.99872 * 19 17 15 23 23 C 1.46921 * 118.73550 * 53.61043 * 14 13 12 24 24 O 1.34644 * 106.11413 * 359.60054 * 4 3 2 25 25 N 1.20883 * 111.46263 * 0.43808 * 24 4 3 26 26 H 1.09001 * 109.46701 * 89.99440 * 1 2 3 27 27 H 1.08994 * 109.47350 * 210.00259 * 1 2 3 28 28 H 1.09011 * 109.46801 * 330.00111 * 1 2 3 29 29 H 1.08003 * 128.07759 * 0.02562 * 3 2 1 30 30 H 0.97000 * 119.99197 * 0.02562 * 7 5 4 31 31 H 1.08993 * 109.47236 * 299.99586 * 8 7 5 32 32 H 1.08998 * 109.46772 * 60.00114 * 8 7 5 33 33 H 1.09001 * 109.45614 * 298.70404 * 11 9 8 34 34 H 1.08996 * 109.46224 * 58.67736 * 11 9 8 35 35 H 1.09005 * 109.49032 * 181.31408 * 12 11 9 36 36 H 1.08997 * 109.49703 * 301.37874 * 12 11 9 37 37 H 1.09001 * 109.58808 * 65.15278 * 13 12 11 38 38 H 1.09003 * 109.58498 * 185.57471 * 13 12 11 39 39 H 0.97007 * 120.00295 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.58589 * 186.60932 * 23 14 13 41 41 H 1.09003 * 109.58903 * 66.18126 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1324 0.0000 4 6 3.6121 0.6008 -0.0064 5 6 4.8871 1.3427 -0.0146 6 8 4.8829 2.5586 -0.0158 7 7 6.0566 0.6728 -0.0209 8 6 7.3228 1.4097 -0.0296 9 6 8.4890 0.4194 -0.0347 10 1 8.3892 -0.2646 0.8081 11 6 9.8094 1.1845 0.0820 12 6 10.9748 0.1929 0.1100 13 6 10.9923 -0.6052 -1.1975 14 7 9.6752 -1.2274 -1.3896 15 6 9.5652 -2.5747 -1.6076 16 1 8.6706 -3.0993 -1.3059 17 6 10.6034 -3.2665 -2.2162 18 7 11.5329 -2.6100 -2.8776 19 14 10.6814 -5.1290 -2.0967 20 1 9.4575 -5.7154 -2.6997 21 1 11.8771 -5.6223 -2.8261 22 1 10.7712 -5.5301 -0.6697 23 6 8.4785 -0.3763 -1.3438 24 8 3.4539 -0.7363 -0.0006 25 7 2.2847 -1.0433 -0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5139 29 1 2.0680 2.1746 0.0004 30 1 6.0598 -0.2972 -0.0203 31 1 7.3730 2.0352 -0.9207 32 1 7.3838 2.0377 0.8592 33 1 9.9198 1.8507 -0.7736 34 1 9.8094 1.7706 1.0010 35 1 11.9131 0.7373 0.2166 36 1 10.8521 -0.4891 0.9514 37 1 11.2055 0.0639 -2.0312 38 1 11.7577 -1.3794 -1.1427 39 1 12.2583 -3.0934 -3.3033 40 1 7.5852 -0.9994 -1.3855 41 1 8.4866 0.3115 -2.1894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359708111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:23 Heat of formation + Delta-G solvation = 34.970647 kcal Electronic energy + Delta-G solvation = -23313.485018 eV Core-core repulsion = 19810.993677 eV Total energy + Delta-G solvation = -3502.491342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -45.20460 -39.79711 -37.85411 -35.32418 -34.82898 -33.12184 -32.25597 -30.48182 -30.34573 -28.99012 -26.09296 -25.29709 -23.65758 -22.99209 -22.08456 -21.00267 -20.25189 -19.16281 -18.38365 -17.98364 -16.75028 -16.24414 -16.09874 -15.39274 -14.86187 -14.46490 -14.25443 -13.94476 -13.73469 -13.67551 -13.45779 -13.42760 -13.04534 -12.83043 -12.40621 -12.34030 -12.21072 -11.64741 -11.33426 -11.02283 -10.72830 -10.55382 -10.48712 -10.36139 -10.25987 -10.19514 -9.95020 -9.93560 -9.62319 -9.46163 -9.13554 -8.47618 -6.69103 -5.80451 -3.23704 0.61959 1.80203 2.45400 2.86155 3.12531 3.37930 3.43735 3.44859 3.80584 4.24247 4.47174 4.71123 4.80345 5.00173 5.08209 5.12731 5.24511 5.30692 5.38615 5.41148 5.42068 5.58412 5.73856 5.76961 5.84165 5.94189 6.17500 6.20369 6.32172 6.35204 6.56483 6.66448 6.73364 6.82388 6.92266 7.24864 7.37996 7.65528 7.77633 7.81735 7.93384 8.43153 9.19405 9.82584 10.39190 11.27880 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.003712 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.418409 B = 7541.875659 C = 8984.298318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.007 3.993 3 C -0.156 4.156 4 C -0.077 4.077 5 C 0.602 3.398 6 O -0.519 6.519 7 N -0.704 5.704 8 C 0.125 3.875 9 C -0.119 4.119 10 H 0.076 0.924 11 C -0.099 4.099 12 C -0.142 4.142 13 C 0.169 3.831 14 N -0.591 5.591 15 C -0.256 4.256 16 H 0.065 0.935 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.282 1.282 21 H -0.291 1.291 22 H -0.283 1.283 23 C 0.152 3.848 24 O 0.120 5.880 25 N -0.345 5.345 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.183 0.817 30 H 0.411 0.589 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.086 0.914 39 H 0.254 0.746 40 H 0.051 0.949 41 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.341 8.267 7.231 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.151 4.151 3 C -0.178 4.178 4 C -0.144 4.144 5 C 0.385 3.615 6 O -0.395 6.395 7 N -0.355 5.355 8 C 0.002 3.998 9 C -0.140 4.140 10 H 0.094 0.906 11 C -0.137 4.137 12 C -0.181 4.181 13 C 0.043 3.957 14 N -0.313 5.313 15 C -0.386 4.386 16 H 0.083 0.917 17 C -0.195 4.195 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.208 1.208 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.025 3.975 24 O 0.047 5.953 25 N -0.046 5.046 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.200 0.800 30 H 0.247 0.753 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -15.396 7.741 7.115 18.644 hybrid contribution 0.042 -0.620 -0.030 0.622 sum -15.355 7.122 7.085 18.349 Atomic orbital electron populations 1.20201 0.85297 1.04063 1.03711 1.23669 0.99404 0.88356 1.03657 1.22843 0.89948 1.01678 1.03338 1.24336 0.97488 0.84035 1.08492 1.16525 0.81138 0.86157 0.77706 1.90864 1.86163 1.11839 1.50675 1.46023 1.05512 1.11422 1.72547 1.21626 0.81060 0.94742 1.02348 1.21991 0.93025 0.96938 1.02052 0.90601 1.21340 0.94348 0.97551 1.00479 1.22174 0.96142 0.97957 1.01838 1.20803 0.88783 0.95401 0.90710 1.44018 1.00285 1.04019 1.82967 1.19135 1.03526 0.82983 1.32913 0.91703 1.25043 0.99303 0.98030 0.97112 1.70026 1.15064 1.34569 1.34949 0.86375 0.77141 0.85579 0.77711 1.20846 1.21643 1.20991 1.20918 0.91275 0.92874 0.92409 1.85015 1.21402 1.22108 1.66752 1.73764 0.89273 1.24319 1.17218 0.89871 0.90275 0.89734 0.79990 0.75279 0.90893 0.91286 0.92386 0.93352 0.93134 0.92710 0.96416 0.89561 0.93558 0.93042 0.96259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.47 36.01 0.38 -0.11 16 2 C 0.01 0.07 7.31 -82.17 -0.60 -0.53 16 3 C -0.16 -1.63 10.91 -38.95 -0.43 -2.06 16 4 C -0.08 -0.95 7.29 -36.32 -0.26 -1.21 16 5 C 0.60 8.11 7.82 -12.48 -0.10 8.02 16 6 O -0.52 -8.23 16.91 5.29 0.09 -8.14 16 7 N -0.70 -9.05 5.33 -61.36 -0.33 -9.37 16 8 C 0.13 1.68 5.07 -4.04 -0.02 1.66 16 9 C -0.12 -1.86 2.37 -90.50 -0.21 -2.07 16 10 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.10 -1.54 5.17 -26.68 -0.14 -1.68 16 12 C -0.14 -2.58 6.08 -26.61 -0.16 -2.75 16 13 C 0.17 3.91 5.30 -3.71 -0.02 3.89 16 14 N -0.59 -14.26 2.99 -172.32 -0.52 -14.78 16 15 C -0.26 -6.85 9.58 -15.06 -0.14 -7.00 16 16 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 17 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16 18 N -0.90 -25.87 11.20 55.49 0.62 -25.25 16 19 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.15 2.97 5.60 -3.71 -0.02 2.95 16 24 O 0.12 1.55 11.04 15.55 0.17 1.72 16 25 N -0.34 -4.41 12.04 33.52 0.40 -4.01 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.18 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.41 4.96 7.53 -40.82 -0.31 4.66 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 39 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.05 0.97 7.14 -51.93 -0.37 0.60 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 341.02 15.07 5.14 5.14 Total: -1.00 -31.02 341.02 -7.30 -38.32 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.04 Total: 0.83 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.82 Total: -0.87 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.18 Total: -53.41 kcal Atomic # 8 Polarization: -6.68 SS G_CDS: 0.26 Total: -6.42 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.02 -7.30 -38.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359708111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.296 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds