Wall clock time and date at job start Fri Apr 10 2020 17:36:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.41260 * 126.70949 * 2 1 4 4 C 1.36824 * 103.84596 * 180.27650 * 3 2 1 5 5 C 1.47511 * 126.94320 * 179.73653 * 4 3 2 6 6 O 1.21589 * 119.99826 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00311 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00008 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46614 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.50155 * 305.06495 * 9 8 7 11 11 C 1.53049 * 109.49582 * 185.00364 * 9 8 7 12 12 C 1.53045 * 109.53596 * 178.68603 * 11 9 8 13 13 C 1.53185 * 109.31224 * 61.36358 * 12 11 9 14 14 N 1.46929 * 108.77971 * 305.36084 * 13 12 11 15 15 C 1.36929 * 120.63096 * 233.58990 * 14 13 12 16 16 H 1.08009 * 119.99867 * 151.82995 * 15 14 13 17 17 C 1.38808 * 120.00459 * 331.83065 * 15 14 13 18 18 N 1.31618 * 119.99891 * 343.08505 * 17 15 14 19 19 Si 1.86803 * 120.00407 * 163.08552 * 17 15 14 20 20 H 1.48503 * 109.46868 * 59.99777 * 19 17 15 21 21 H 1.48496 * 109.47447 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46836 * 299.99872 * 19 17 15 23 23 C 1.46921 * 118.73550 * 53.61043 * 14 13 12 24 24 O 1.34644 * 106.11413 * 359.60054 * 4 3 2 25 25 N 1.20883 * 111.46263 * 0.43808 * 24 4 3 26 26 H 1.09001 * 109.46701 * 89.99440 * 1 2 3 27 27 H 1.08994 * 109.47350 * 210.00259 * 1 2 3 28 28 H 1.09011 * 109.46801 * 330.00111 * 1 2 3 29 29 H 1.08003 * 128.07759 * 0.02562 * 3 2 1 30 30 H 0.97000 * 119.99197 * 0.02562 * 7 5 4 31 31 H 1.08993 * 109.47236 * 299.99586 * 8 7 5 32 32 H 1.08998 * 109.46772 * 60.00114 * 8 7 5 33 33 H 1.09001 * 109.45614 * 298.70404 * 11 9 8 34 34 H 1.08996 * 109.46224 * 58.67736 * 11 9 8 35 35 H 1.09005 * 109.49032 * 181.31408 * 12 11 9 36 36 H 1.08997 * 109.49703 * 301.37874 * 12 11 9 37 37 H 1.09001 * 109.58808 * 65.15278 * 13 12 11 38 38 H 1.09003 * 109.58498 * 185.57471 * 13 12 11 39 39 H 0.97007 * 120.00295 * 180.02562 * 18 17 15 40 40 H 1.08995 * 109.58589 * 186.60932 * 23 14 13 41 41 H 1.09003 * 109.58903 * 66.18126 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1324 0.0000 4 6 3.6121 0.6008 -0.0064 5 6 4.8871 1.3427 -0.0146 6 8 4.8829 2.5586 -0.0158 7 7 6.0566 0.6728 -0.0209 8 6 7.3228 1.4097 -0.0296 9 6 8.4890 0.4194 -0.0347 10 1 8.3892 -0.2646 0.8081 11 6 9.8094 1.1845 0.0820 12 6 10.9748 0.1929 0.1100 13 6 10.9923 -0.6052 -1.1975 14 7 9.6752 -1.2274 -1.3896 15 6 9.5652 -2.5747 -1.6076 16 1 8.6706 -3.0993 -1.3059 17 6 10.6034 -3.2665 -2.2162 18 7 11.5329 -2.6100 -2.8776 19 14 10.6814 -5.1290 -2.0967 20 1 9.4575 -5.7154 -2.6997 21 1 11.8771 -5.6223 -2.8261 22 1 10.7712 -5.5301 -0.6697 23 6 8.4785 -0.3763 -1.3438 24 8 3.4539 -0.7363 -0.0006 25 7 2.2847 -1.0433 -0.0005 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8901 0.5139 29 1 2.0680 2.1746 0.0004 30 1 6.0598 -0.2972 -0.0203 31 1 7.3730 2.0352 -0.9207 32 1 7.3838 2.0377 0.8592 33 1 9.9198 1.8507 -0.7736 34 1 9.8094 1.7706 1.0010 35 1 11.9131 0.7373 0.2166 36 1 10.8521 -0.4891 0.9514 37 1 11.2055 0.0639 -2.0312 38 1 11.7577 -1.3794 -1.1427 39 1 12.2583 -3.0934 -3.3033 40 1 7.5852 -0.9994 -1.3855 41 1 8.4866 0.3115 -2.1894 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359708111.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:23 Heat of formation + Delta-G solvation = 15.088216 kcal Electronic energy + Delta-G solvation = -23314.347185 eV Core-core repulsion = 19810.993677 eV Total energy + Delta-G solvation = -3503.353508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -46.07329 -40.91074 -39.34729 -36.47016 -35.85385 -34.72713 -33.26114 -32.28329 -31.79370 -29.61987 -27.42365 -27.12107 -24.72442 -23.94515 -23.71771 -22.42276 -21.33629 -20.54986 -19.37852 -18.88401 -18.61511 -17.21835 -17.20956 -16.81999 -16.51332 -15.79791 -15.51026 -15.32692 -15.00354 -14.77540 -14.50840 -14.21951 -14.14272 -13.99955 -13.75326 -13.67101 -13.62174 -13.01710 -12.85557 -12.50837 -12.38793 -12.30471 -11.98043 -11.80694 -11.66575 -11.52673 -11.20376 -11.13228 -11.07392 -10.88070 -10.52020 -10.21166 -8.66100 -7.86311 -5.31978 -0.31306 0.99748 1.47619 1.49441 1.50635 1.56102 1.84859 2.15203 2.51739 3.08446 3.28418 3.41209 3.60012 3.84758 3.98207 3.99480 4.02590 4.08188 4.34649 4.43598 4.58039 4.62219 4.69412 4.74847 4.77433 4.80912 4.88401 4.92029 5.00742 5.13705 5.15324 5.19140 5.31513 5.37354 5.45471 5.58613 5.68421 5.80849 6.20609 6.40336 6.81246 7.01932 7.16363 7.88008 8.39188 9.19594 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016698 B = 0.003712 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.418409 B = 7541.875659 C = 8984.298318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 C -0.146 4.146 4 C -0.094 4.094 5 C 0.607 3.393 6 O -0.544 6.544 7 N -0.702 5.702 8 C 0.135 3.865 9 C -0.103 4.103 10 H 0.077 0.923 11 C -0.096 4.096 12 C -0.131 4.131 13 C 0.172 3.828 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.068 0.932 17 C -0.050 4.050 18 N -0.935 5.935 19 Si 0.965 3.035 20 H -0.276 1.276 21 H -0.296 1.296 22 H -0.277 1.277 23 C 0.149 3.851 24 O 0.103 5.897 25 N -0.372 5.372 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.205 0.795 30 H 0.414 0.586 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.052 0.948 37 H -0.006 1.006 38 H 0.050 0.950 39 H 0.249 0.751 40 H 0.053 0.947 41 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.266 9.162 8.675 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.168 4.168 4 C -0.159 4.159 5 C 0.391 3.609 6 O -0.422 6.422 7 N -0.352 5.352 8 C 0.012 3.988 9 C -0.123 4.123 10 H 0.096 0.904 11 C -0.134 4.134 12 C -0.170 4.170 13 C 0.046 3.954 14 N -0.332 5.332 15 C -0.394 4.394 16 H 0.086 0.914 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.202 1.202 21 H -0.222 1.222 22 H -0.203 1.203 23 C 0.024 3.976 24 O 0.033 5.967 25 N -0.077 5.077 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.128 0.872 29 H 0.222 0.778 30 H 0.251 0.749 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.012 0.988 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -17.325 8.643 8.578 21.176 hybrid contribution 0.555 -0.867 -0.511 1.149 sum -16.770 7.776 8.067 20.168 Atomic orbital electron populations 1.20422 0.82508 1.05468 1.04959 1.24318 1.01046 0.87536 1.01561 1.23225 0.89194 1.02768 1.01590 1.24245 0.97584 0.84198 1.09920 1.16562 0.81463 0.85843 0.77000 1.90847 1.86591 1.12787 1.52006 1.45995 1.05395 1.11604 1.72256 1.21486 0.80266 0.94006 1.03053 1.21749 0.94319 0.96914 0.99329 0.90430 1.21336 0.92731 0.96971 1.02348 1.22002 0.98584 0.98044 0.98341 1.20644 0.87702 0.94364 0.92647 1.44287 1.01818 1.03928 1.83215 1.19501 1.03436 0.84588 1.31850 0.91393 1.25780 0.99371 1.02029 0.97394 1.70185 1.15710 1.35887 1.36366 0.85385 0.76844 0.80789 0.77704 1.20211 1.22188 1.20318 1.21061 0.89629 0.92576 0.94355 1.84991 1.21702 1.22302 1.67661 1.73762 0.89550 1.25581 1.18769 0.88559 0.89985 0.87238 0.77816 0.74883 0.91225 0.89516 0.92332 0.89758 0.91179 0.92928 0.98827 0.93188 0.94182 0.92828 0.97282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.47 71.24 0.75 -0.02 16 2 C 0.01 0.25 7.31 43.55 0.32 0.57 16 3 C -0.15 -2.77 10.91 22.68 0.25 -2.52 16 4 C -0.09 -2.19 7.29 24.39 0.18 -2.01 16 5 C 0.61 15.61 7.82 86.69 0.68 16.29 16 6 O -0.54 -16.41 16.91 -4.00 -0.07 -16.47 16 7 N -0.70 -17.09 5.33 -466.30 -2.48 -19.58 16 8 C 0.14 3.33 5.07 86.38 0.44 3.77 16 9 C -0.10 -3.01 2.37 -10.71 -0.03 -3.04 16 10 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 11 C -0.10 -2.75 5.17 30.63 0.16 -2.59 16 12 C -0.13 -4.60 6.08 30.67 0.19 -4.42 16 13 C 0.17 8.16 5.30 86.36 0.46 8.62 16 14 N -0.61 -29.84 2.99 -699.11 -2.09 -31.94 16 15 C -0.26 -14.30 9.58 84.03 0.81 -13.50 16 16 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 17 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 18 N -0.94 -55.47 11.20 21.65 0.24 -55.22 16 19 Si 0.96 44.79 29.59 68.60 2.03 46.81 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 C 0.15 5.81 5.60 86.36 0.48 6.29 16 24 O 0.10 2.60 11.04 65.81 0.73 3.33 16 25 N -0.37 -9.20 12.04 -48.85 -0.59 -9.78 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.11 0.56 8.14 -2.38 -0.02 0.55 16 29 H 0.20 2.83 8.06 -2.91 -0.02 2.80 16 30 H 0.41 9.63 7.53 -92.71 -0.70 8.93 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 37 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 38 H 0.05 2.71 6.06 -2.39 -0.01 2.70 16 39 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 40 H 0.05 2.02 7.14 -2.39 -0.02 2.00 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 Total: -1.00 -68.39 341.02 3.20 -65.19 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.34 Total: 12.61 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.09 Total: 5.05 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -4.92 Total: -116.52 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.66 Total: -13.14 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -68.39 3.20 -65.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359708111.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.283 kcal (2) G-P(sol) polarization free energy of solvation -68.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds