Wall clock time and date at job start Fri Apr 10 2020 17:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99707 * 2 1 3 5 5 C 1.50702 * 109.46604 * 60.00075 * 4 2 1 6 6 H 1.07994 * 120.00278 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00004 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99430 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00237 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47023 * 60.00307 * 9 7 5 11 11 H 1.48501 * 109.47000 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47428 * 300.00287 * 9 7 5 13 13 C 1.53004 * 109.47002 * 119.99866 * 2 1 3 14 14 N 1.46500 * 109.47126 * 299.99687 * 13 2 1 15 15 C 1.34778 * 119.99683 * 180.02562 * 14 13 2 16 16 O 1.21283 * 120.00173 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99740 * 180.02562 * 15 14 13 18 18 N 1.46496 * 109.46849 * 179.97438 * 17 15 14 19 19 C 1.35870 * 119.93335 * 90.00217 * 18 17 15 20 20 C 1.36022 * 119.18850 * 179.97438 * 19 18 17 21 21 C 1.39805 * 119.08594 * 0.02562 * 20 19 18 22 22 N 1.31764 * 119.82935 * 359.97438 * 21 20 19 23 23 C 1.33522 * 120.81236 * 0.02562 * 22 21 20 24 24 O 1.21951 * 119.51853 * 179.97438 * 23 22 21 25 25 H 1.09007 * 109.47048 * 299.99685 * 1 2 3 26 26 H 1.09000 * 109.47504 * 59.99984 * 1 2 3 27 27 H 1.09002 * 109.47078 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47340 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46947 * 300.00357 * 3 2 1 30 30 H 1.09004 * 109.47359 * 59.99992 * 3 2 1 31 31 H 1.08997 * 109.46935 * 179.97438 * 4 2 1 32 32 H 1.08995 * 109.47377 * 300.00298 * 4 2 1 33 33 H 0.97008 * 119.99586 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46752 * 180.02562 * 13 2 1 35 35 H 1.08990 * 109.47336 * 60.00411 * 13 2 1 36 36 H 0.97002 * 119.99995 * 0.02562 * 14 13 2 37 37 H 1.09001 * 109.47221 * 60.00230 * 17 15 14 38 38 H 1.08990 * 109.47277 * 300.00270 * 17 15 14 39 39 H 1.07999 * 120.40632 * 0.02562 * 19 18 17 40 40 H 1.08004 * 120.45695 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.09130 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9164 0.8669 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6273 -1.5509 -3.8525 9 14 1.2479 0.3986 -5.2571 10 1 1.7419 1.7990 -5.2571 11 1 1.7431 -0.3014 -6.4696 12 1 -0.2370 0.3975 -5.2573 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4907 3.6696 16 8 2.5757 -1.4763 3.7808 17 6 1.3749 0.2194 4.9000 18 7 1.8634 -0.4711 6.0961 19 6 3.0506 -0.1106 6.6499 20 6 3.4893 -0.7615 7.7607 21 6 2.7062 -1.7852 8.3024 22 7 1.5607 -2.1043 7.7348 23 6 1.1352 -1.4617 6.6445 24 8 0.0714 -1.7767 6.1381 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7209 -1.2493 32 1 1.6767 -1.7489 -1.2492 33 1 2.8623 -1.8819 -4.7336 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.2849 0.2186 4.9001 38 1 1.7375 1.2473 4.8999 39 1 3.6382 0.6838 6.2140 40 1 4.4302 -0.4919 8.2175 41 1 3.0388 -2.3126 9.1843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359763795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:28 Heat of formation + Delta-G solvation = -30.036606 kcal Electronic energy + Delta-G solvation = -23258.887723 eV Core-core repulsion = 19753.577456 eV Total energy + Delta-G solvation = -3505.310268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.02816 -39.66853 -37.30743 -37.26423 -35.66975 -33.79513 -32.20370 -31.43876 -29.22894 -27.13884 -26.59080 -26.17605 -25.02184 -23.74626 -22.81291 -20.65941 -18.74294 -18.62453 -17.83973 -17.44273 -17.03271 -16.35974 -15.85515 -15.50034 -15.33866 -14.90972 -14.53503 -14.20172 -13.97591 -13.84790 -13.23691 -13.15806 -12.84222 -12.70968 -12.36135 -12.12153 -12.10063 -11.60960 -11.23698 -11.09175 -11.05576 -10.91416 -10.69056 -10.48730 -10.32623 -10.07379 -9.95228 -9.86298 -9.26234 -9.00018 -8.93542 -8.75867 -8.39705 -6.03736 -4.05563 0.31334 1.41660 1.99617 2.47226 3.13374 3.29160 3.35007 3.35946 3.63898 3.97420 4.02754 4.29893 4.41524 4.47177 4.57984 4.76758 4.87301 5.13541 5.31533 5.39119 5.44799 5.53107 5.65744 5.87671 6.06635 6.09665 6.12917 6.17242 6.29881 6.39635 6.55674 6.64076 6.97650 7.00787 7.04632 7.45645 7.54429 7.58612 7.70276 7.92465 7.94170 8.12620 8.35616 8.98894 9.57789 11.07672 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.040403 B = 0.002764 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.850195 B =10126.927209 C =10170.703275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.127 4.127 4 C 0.036 3.964 5 C -0.513 4.513 6 H 0.059 0.941 7 C 0.057 3.943 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.128 3.872 14 N -0.713 5.713 15 C 0.495 3.505 16 O -0.533 6.533 17 C 0.070 3.930 18 N -0.497 5.497 19 C 0.196 3.804 20 C -0.297 4.297 21 C 0.248 3.752 22 N -0.546 5.546 23 C 0.632 3.368 24 O -0.528 6.528 25 H 0.029 0.971 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.401 0.599 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.173 0.827 40 H 0.159 0.841 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.599 8.819 22.607 24.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C 0.006 3.994 14 N -0.365 5.365 15 C 0.279 3.721 16 O -0.409 6.409 17 C -0.057 4.057 18 N -0.211 5.211 19 C 0.057 3.943 20 C -0.323 4.323 21 C 0.065 3.935 22 N -0.278 5.278 23 C 0.334 3.666 24 O -0.402 6.402 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.236 0.764 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.190 0.810 40 H 0.177 0.823 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.663 7.143 22.251 23.429 hybrid contribution 0.153 1.411 -1.352 1.960 sum 1.817 8.554 20.899 22.655 Atomic orbital electron populations 1.21775 0.95123 1.01355 1.00290 1.20922 0.95596 0.95854 0.94925 1.21764 1.00509 0.95826 1.00290 1.19085 0.96324 0.95278 0.89412 1.21128 1.31362 1.12171 0.90494 0.92286 1.25017 0.95273 0.95061 0.99115 1.69957 1.36796 1.22957 1.23628 0.86697 0.79184 0.79717 0.82625 1.20319 1.21365 1.20296 1.21703 0.98925 0.96223 0.82553 1.46110 1.52850 1.31978 1.05543 1.20505 0.81398 0.85323 0.84919 1.90763 1.37932 1.25710 1.86533 1.21912 1.04245 0.96718 0.82827 1.46091 1.18701 1.31846 1.24460 1.22605 0.84698 0.95591 0.91367 1.21597 1.05702 1.03773 1.01254 1.23704 0.86887 0.88306 0.94584 1.69955 1.17706 1.29287 1.10818 1.18212 0.85746 0.78939 0.83684 1.91009 1.21887 1.64827 1.62442 0.95238 0.91298 0.93260 0.93346 0.91300 0.95299 0.96353 0.96313 0.92924 0.91603 0.91600 0.76389 0.84954 0.85792 0.80996 0.82334 0.80876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 2 C -0.07 -1.32 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 4 C 0.04 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.41 7.65 -34.44 -0.26 -13.67 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 9 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 13 C 0.13 2.18 4.56 -4.04 -0.02 2.17 16 14 N -0.71 -9.40 4.96 -60.29 -0.30 -9.70 16 15 C 0.50 6.81 7.90 -10.98 -0.09 6.73 16 16 O -0.53 -9.83 16.43 5.56 0.09 -9.74 16 17 C 0.07 0.65 5.83 -5.19 -0.03 0.62 16 18 N -0.50 -5.43 2.08 -123.03 -0.26 -5.69 16 19 C 0.20 1.33 10.41 -16.56 -0.17 1.16 16 20 C -0.30 -1.67 10.07 -39.79 -0.40 -2.07 16 21 C 0.25 1.94 11.30 -17.00 -0.19 1.75 16 22 N -0.55 -7.41 10.48 -16.60 -0.17 -7.59 16 23 C 0.63 9.68 8.34 -88.18 -0.74 8.95 16 24 O -0.53 -10.24 16.74 4.96 0.08 -10.16 16 25 H 0.03 0.40 6.86 -51.92 -0.36 0.04 16 26 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 30 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.40 4.16 6.16 -40.82 -0.25 3.91 16 37 H 0.13 1.24 7.39 -51.93 -0.38 0.86 16 38 H 0.12 0.52 8.03 -51.93 -0.42 0.10 16 39 H 0.17 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.16 0.31 8.06 -52.48 -0.42 -0.12 16 41 H 0.17 0.63 8.06 -52.48 -0.42 0.20 16 LS Contribution 342.59 15.07 5.16 5.16 Total: -1.00 -38.42 342.59 -6.96 -45.38 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.69 Total: -0.91 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -1.60 Total: 2.80 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: 0.01 Total: -48.48 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.17 Total: -19.91 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -38.42 -6.96 -45.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359763795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.340 kcal (2) G-P(sol) polarization free energy of solvation -38.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds