Wall clock time and date at job start Fri Apr 10 2020 17:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 C 1.53000 * 109.47345 * 239.99707 * 2 1 3 5 5 C 1.50702 * 109.46604 * 60.00075 * 4 2 1 6 6 H 1.07994 * 120.00278 * 359.97438 * 5 4 2 7 7 C 1.37880 * 120.00004 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99430 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00237 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47023 * 60.00307 * 9 7 5 11 11 H 1.48501 * 109.47000 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47428 * 300.00287 * 9 7 5 13 13 C 1.53004 * 109.47002 * 119.99866 * 2 1 3 14 14 N 1.46500 * 109.47126 * 299.99687 * 13 2 1 15 15 C 1.34778 * 119.99683 * 180.02562 * 14 13 2 16 16 O 1.21283 * 120.00173 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99740 * 180.02562 * 15 14 13 18 18 N 1.46496 * 109.46849 * 179.97438 * 17 15 14 19 19 C 1.35870 * 119.93335 * 90.00217 * 18 17 15 20 20 C 1.36022 * 119.18850 * 179.97438 * 19 18 17 21 21 C 1.39805 * 119.08594 * 0.02562 * 20 19 18 22 22 N 1.31764 * 119.82935 * 359.97438 * 21 20 19 23 23 C 1.33522 * 120.81236 * 0.02562 * 22 21 20 24 24 O 1.21951 * 119.51853 * 179.97438 * 23 22 21 25 25 H 1.09007 * 109.47048 * 299.99685 * 1 2 3 26 26 H 1.09000 * 109.47504 * 59.99984 * 1 2 3 27 27 H 1.09002 * 109.47078 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47340 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.46947 * 300.00357 * 3 2 1 30 30 H 1.09004 * 109.47359 * 59.99992 * 3 2 1 31 31 H 1.08997 * 109.46935 * 179.97438 * 4 2 1 32 32 H 1.08995 * 109.47377 * 300.00298 * 4 2 1 33 33 H 0.97008 * 119.99586 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46752 * 180.02562 * 13 2 1 35 35 H 1.08990 * 109.47336 * 60.00411 * 13 2 1 36 36 H 0.97002 * 119.99995 * 0.02562 * 14 13 2 37 37 H 1.09001 * 109.47221 * 60.00230 * 17 15 14 38 38 H 1.08990 * 109.47277 * 300.00270 * 17 15 14 39 39 H 1.07999 * 120.40632 * 0.02562 * 19 18 17 40 40 H 1.08004 * 120.45695 * 179.97438 * 20 19 18 41 41 H 1.08003 * 120.09130 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9164 0.8669 -2.3806 7 6 1.8712 -0.4816 -3.7319 8 7 2.6273 -1.5509 -3.8525 9 14 1.2479 0.3986 -5.2571 10 1 1.7419 1.7990 -5.2571 11 1 1.7431 -0.3014 -6.4696 12 1 -0.2370 0.3975 -5.2573 13 6 2.0400 -0.7212 1.2493 14 7 1.5517 -0.0306 2.4454 15 6 1.8777 -0.4907 3.6696 16 8 2.5757 -1.4763 3.7808 17 6 1.3749 0.2194 4.9000 18 7 1.8634 -0.4711 6.0961 19 6 3.0506 -0.1106 6.6499 20 6 3.4893 -0.7615 7.7607 21 6 2.7062 -1.7852 8.3024 22 7 1.5607 -2.1043 7.7348 23 6 1.1352 -1.4617 6.6445 24 8 0.0714 -1.7767 6.1381 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1300 -0.7209 -1.2493 32 1 1.6767 -1.7489 -1.2492 33 1 2.8623 -1.8819 -4.7336 34 1 3.1300 -0.7208 1.2495 35 1 1.6767 -1.7488 1.2493 36 1 0.9937 0.7579 2.3564 37 1 0.2849 0.2186 4.9001 38 1 1.7375 1.2473 4.8999 39 1 3.6382 0.6838 6.2140 40 1 4.4302 -0.4919 8.2175 41 1 3.0388 -2.3126 9.1843 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359763795.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:27 Heat of formation + Delta-G solvation = -60.086899 kcal Electronic energy + Delta-G solvation = -23260.190802 eV Core-core repulsion = 19753.577456 eV Total energy + Delta-G solvation = -3506.613346 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.83072 -40.83945 -38.74370 -38.22731 -36.49683 -35.33833 -34.02151 -32.15310 -30.19957 -28.99080 -27.96849 -27.42804 -25.80489 -24.96005 -24.24828 -21.81014 -20.09095 -19.39521 -18.67235 -18.56670 -18.36736 -17.80494 -16.92318 -16.64390 -16.53429 -16.30144 -15.69351 -15.33462 -15.14972 -14.83767 -14.64806 -14.35854 -14.05919 -13.94820 -13.74391 -13.29150 -13.18677 -12.84435 -12.76915 -12.59619 -12.44720 -12.33800 -12.24287 -12.07515 -12.02592 -11.55755 -11.29159 -10.94646 -10.85609 -10.63937 -10.52197 -10.19692 -9.54960 -8.15383 -6.23566 -0.30570 0.73412 1.25327 1.41674 1.41912 1.44053 1.51205 2.10989 2.43688 2.81660 3.19178 3.33675 3.54544 3.66168 3.80413 3.90975 3.94571 4.04963 4.14775 4.20236 4.41961 4.62538 4.65914 4.68777 4.74265 4.88001 4.95160 5.06477 5.12328 5.32314 5.33543 5.42627 5.48744 5.48850 5.52837 5.54930 5.78649 5.88415 6.27578 6.41296 6.70073 6.91781 7.08577 7.09960 7.44520 8.97064 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.040403 B = 0.002764 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.850195 B =10126.927209 C =10170.703275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.075 0.925 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.959 3.041 10 H -0.263 1.263 11 H -0.292 1.292 12 H -0.268 1.268 13 C 0.143 3.857 14 N -0.699 5.699 15 C 0.494 3.506 16 O -0.586 6.586 17 C 0.077 3.923 18 N -0.501 5.501 19 C 0.185 3.815 20 C -0.282 4.282 21 C 0.247 3.753 22 N -0.605 5.605 23 C 0.616 3.384 24 O -0.598 6.598 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.077 0.923 31 H -0.012 1.012 32 H -0.020 1.020 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.034 0.966 36 H 0.419 0.581 37 H 0.131 0.869 38 H 0.190 0.810 39 H 0.222 0.778 40 H 0.207 0.793 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.311 12.585 24.438 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.065 4.065 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.093 0.907 7 C -0.203 4.203 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.188 1.188 11 H -0.218 1.218 12 H -0.193 1.193 13 C 0.019 3.981 14 N -0.352 5.352 15 C 0.280 3.720 16 O -0.466 6.466 17 C -0.049 4.049 18 N -0.213 5.213 19 C 0.049 3.951 20 C -0.306 4.306 21 C 0.069 3.931 22 N -0.339 5.339 23 C 0.320 3.680 24 O -0.478 6.478 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.006 0.994 32 H -0.002 1.002 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.258 0.742 37 H 0.149 0.851 38 H 0.207 0.793 39 H 0.239 0.761 40 H 0.224 0.776 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 2.420 10.990 24.132 26.627 hybrid contribution 0.085 0.215 -1.794 1.809 sum 2.505 11.205 22.338 25.116 Atomic orbital electron populations 1.21726 0.93880 1.00657 1.01890 1.20712 0.96462 0.96792 0.92485 1.21693 1.00119 0.93924 1.02020 1.18974 0.94377 0.93966 0.92521 1.21570 1.30463 1.12182 0.91003 0.90734 1.25973 0.95654 0.95849 1.02820 1.70125 1.38802 1.25011 1.24174 0.85586 0.78873 0.78881 0.78231 1.18790 1.21816 1.19319 1.21214 0.98073 0.94954 0.83891 1.45830 1.52822 1.32173 1.04368 1.21329 0.80130 0.84595 0.85972 1.90745 1.40427 1.28100 1.87313 1.22120 1.04304 0.98671 0.79811 1.46007 1.19730 1.31007 1.24559 1.23587 0.83301 0.96631 0.91562 1.22191 1.06437 1.01697 1.00248 1.24509 0.85192 0.88464 0.94911 1.69869 1.20885 1.31343 1.11850 1.18473 0.85620 0.79719 0.84232 1.90929 1.24854 1.67404 1.64627 0.90859 0.92357 0.95198 0.94039 0.92629 0.90420 0.99359 1.00211 0.93180 0.92813 0.94737 0.74233 0.85084 0.79273 0.76125 0.77627 0.77120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 8.05 71.98 0.58 -3.55 16 2 C -0.06 -2.32 0.54 -52.18 -0.03 -2.35 16 3 C -0.12 -3.63 8.05 71.98 0.58 -3.05 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -27.24 7.65 25.60 0.20 -27.04 16 6 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 7 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 8 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 9 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.14 4.93 4.56 86.38 0.39 5.32 16 14 N -0.70 -17.07 4.96 -463.05 -2.30 -19.37 16 15 C 0.49 12.86 7.90 87.66 0.69 13.55 16 16 O -0.59 -21.77 16.43 -3.04 -0.05 -21.82 16 17 C 0.08 1.20 5.83 85.64 0.50 1.70 16 18 N -0.50 -9.94 2.08 -661.37 -1.37 -11.31 16 19 C 0.19 1.74 10.41 83.55 0.87 2.61 16 20 C -0.28 -1.95 10.07 22.13 0.22 -1.73 16 21 C 0.25 3.32 11.30 85.08 0.96 4.28 16 22 N -0.60 -16.55 10.48 -325.25 -3.41 -19.96 16 23 C 0.62 19.24 8.34 179.50 1.50 20.74 16 24 O -0.60 -24.62 16.74 -5.16 -0.09 -24.71 16 25 H 0.07 1.78 6.86 -2.38 -0.02 1.76 16 26 H 0.06 2.06 6.62 -2.39 -0.02 2.05 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.84 6.62 -2.39 -0.02 1.83 16 30 H 0.08 1.58 6.86 -2.38 -0.02 1.56 16 31 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 32 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 33 H 0.26 15.06 8.31 -92.70 -0.77 14.29 16 34 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.42 7.01 6.16 -92.71 -0.57 6.44 16 37 H 0.13 2.21 7.39 -2.39 -0.02 2.19 16 38 H 0.19 0.40 8.03 -2.39 -0.02 0.38 16 39 H 0.22 -0.23 8.06 -2.91 -0.02 -0.25 16 40 H 0.21 -0.54 8.06 -2.91 -0.02 -0.56 16 41 H 0.21 0.87 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -94.78 342.59 2.62 -92.17 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 0.47 Total: 4.00 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 7.05 Total: 12.70 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -6.79 Total: -107.62 kcal Atomic # 8 Polarization: -46.39 SS G_CDS: -0.14 Total: -46.52 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -94.78 2.62 -92.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359763795.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.080 kcal (2) G-P(sol) polarization free energy of solvation -94.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds