Wall clock time and date at job start Fri Apr 10 2020 17:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33695 * 126.27365 * 2 1 4 4 C 1.30613 * 108.99146 * 179.97438 * 3 2 1 5 5 O 1.33658 * 109.15911 * 0.02562 * 4 3 2 6 6 C 1.35341 * 107.68729 * 359.97438 * 5 4 3 7 7 C 1.46722 * 126.65036 * 179.97438 * 6 5 4 8 8 O 1.21685 * 120.00223 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99426 * 0.02942 * 7 6 5 10 10 C 1.46501 * 119.99370 * 179.97438 * 9 7 6 11 11 C 1.53007 * 109.46833 * 179.97438 * 10 9 7 12 12 C 1.53040 * 109.46227 * 295.02905 * 11 10 9 13 13 C 1.53193 * 109.31042 * 178.59678 * 12 11 10 14 14 N 1.46932 * 108.76234 * 54.66082 * 13 12 11 15 15 C 1.36938 * 120.63180 * 126.36001 * 14 13 12 16 16 H 1.07997 * 120.00003 * 331.86147 * 15 14 13 17 17 C 1.38812 * 119.99907 * 151.85418 * 15 14 13 18 18 N 1.31612 * 120.00076 * 343.07081 * 17 15 14 19 19 Si 1.86797 * 119.99648 * 163.06539 * 17 15 14 20 20 H 1.48500 * 109.47045 * 90.00378 * 19 17 15 21 21 H 1.48505 * 109.47258 * 210.00331 * 19 17 15 22 22 H 1.48501 * 109.47638 * 330.00262 * 19 17 15 23 23 C 1.46923 * 118.73405 * 306.37753 * 14 13 12 24 24 C 1.53035 * 109.45844 * 174.97353 * 11 10 9 25 25 H 1.08994 * 109.47314 * 270.02612 * 1 2 3 26 26 H 1.09008 * 109.47247 * 30.02071 * 1 2 3 27 27 H 1.08999 * 109.47429 * 150.02376 * 1 2 3 28 28 H 1.08004 * 125.42263 * 180.02562 * 4 3 2 29 29 H 0.96991 * 120.00544 * 359.97438 * 9 7 6 30 30 H 1.09001 * 109.47480 * 299.99797 * 10 9 7 31 31 H 1.09002 * 109.47386 * 60.00249 * 10 9 7 32 32 H 1.09001 * 109.45642 * 55.00631 * 11 10 9 33 33 H 1.08996 * 109.49529 * 298.56657 * 12 11 10 34 34 H 1.09001 * 109.49513 * 58.65937 * 12 11 10 35 35 H 1.08995 * 109.60096 * 294.86546 * 13 12 11 36 36 H 1.09000 * 109.69913 * 174.50045 * 13 12 11 37 37 H 0.97004 * 120.00262 * 179.97438 * 18 17 15 38 38 H 1.09006 * 109.58847 * 293.82132 * 23 14 13 39 39 H 1.09002 * 109.70168 * 173.47008 * 23 14 13 40 40 H 1.09009 * 109.49883 * 301.33899 * 24 11 10 41 41 H 1.09002 * 109.50258 * 61.40500 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6898 0.0006 5 8 3.5889 -0.6460 0.0004 6 6 2.3137 -1.0992 0.0002 7 6 1.8826 -2.5017 -0.0005 8 8 0.6965 -2.7737 -0.0010 9 7 2.8004 -3.4887 -0.0006 10 6 2.3699 -4.8890 -0.0008 11 6 3.5990 -5.8003 -0.0014 12 6 4.3717 -5.6133 -1.3091 13 6 5.6201 -6.5011 -1.2913 14 7 5.2107 -7.8869 -1.0255 15 6 5.5896 -8.8997 -1.8657 16 1 5.7759 -8.6943 -2.9094 17 6 5.7343 -10.1904 -1.3758 18 7 5.8388 -10.3945 -0.0798 19 14 5.7805 -11.6376 -2.5560 20 1 7.1845 -11.9005 -2.9620 21 1 5.2254 -12.8409 -1.8857 22 1 4.9683 -11.3220 -3.7585 23 6 4.3868 -8.1653 0.1587 24 6 3.1525 -7.2586 0.1248 25 1 -0.3633 0.0005 1.0276 26 1 -0.3634 0.8899 -0.5142 27 1 -0.3634 -0.8902 -0.5134 28 1 4.4044 1.3443 0.0011 29 1 3.7457 -3.2719 -0.0005 30 1 1.7720 -5.0855 0.8892 31 1 1.7721 -5.0853 -0.8908 32 1 4.2420 -5.5433 0.8403 33 1 3.7373 -5.8940 -2.1498 34 1 4.6692 -4.5695 -1.4098 35 1 6.2977 -6.1633 -0.5072 36 1 6.1229 -6.4475 -2.2569 37 1 5.9396 -11.2965 0.2627 38 1 4.9639 -7.9634 1.0611 39 1 4.0736 -9.2093 0.1513 40 1 2.5820 -7.3861 1.0449 41 1 2.5292 -7.5236 -0.7293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362532589.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:31 Heat of formation + Delta-G solvation = -26.202632 kcal Electronic energy + Delta-G solvation = -23280.170474 eV Core-core repulsion = 19775.026461 eV Total energy + Delta-G solvation = -3505.144014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.47261 -40.81618 -39.34720 -36.75036 -36.15725 -34.52419 -32.85679 -32.40008 -31.42005 -29.40415 -28.08347 -25.95089 -24.64926 -23.82310 -23.01154 -22.35920 -21.70508 -20.73299 -19.35848 -18.63088 -17.96692 -17.44675 -17.16414 -16.79842 -16.27265 -15.78666 -15.53997 -15.31044 -15.28087 -14.96401 -14.73183 -14.27274 -14.12076 -13.96661 -13.86518 -13.45099 -13.22112 -13.00243 -12.83208 -12.55851 -12.27671 -12.16352 -12.03095 -11.98691 -11.84674 -11.64830 -11.39499 -11.14125 -11.09101 -10.53284 -10.37092 -9.91132 -8.66575 -7.87392 -5.32183 -0.25130 1.39450 1.41265 1.45965 1.48041 1.57368 1.94401 2.13965 2.51492 3.14671 3.27373 3.65893 3.68634 3.70821 3.83106 3.92610 4.06736 4.39972 4.43862 4.50149 4.53663 4.66821 4.67624 4.72641 4.78297 4.82129 4.93386 4.98791 5.01901 5.11681 5.22505 5.28008 5.29709 5.32266 5.42238 5.55262 5.66247 5.79377 6.24245 6.40227 6.54627 6.91871 7.16200 7.88400 8.38911 9.18806 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037546 B = 0.002851 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.581781 B = 9819.608115 C =10148.270475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.072 3.928 3 N -0.525 5.525 4 C 0.230 3.770 5 O -0.192 6.192 6 C -0.138 4.138 7 C 0.606 3.394 8 O -0.546 6.546 9 N -0.703 5.703 10 C 0.135 3.865 11 C -0.079 4.079 12 C -0.115 4.115 13 C 0.140 3.860 14 N -0.612 5.612 15 C -0.263 4.263 16 H 0.064 0.936 17 C -0.051 4.051 18 N -0.934 5.934 19 Si 0.964 3.036 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.272 1.272 23 C 0.177 3.823 24 C -0.122 4.122 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.309 0.691 29 H 0.414 0.586 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.080 0.920 35 H 0.017 0.983 36 H 0.051 0.949 37 H 0.250 0.750 38 H -0.002 1.002 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.604 21.903 1.272 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 N -0.255 5.255 4 C 0.005 3.995 5 O -0.079 6.079 6 C -0.193 4.193 7 C 0.392 3.608 8 O -0.426 6.426 9 N -0.354 5.354 10 C 0.012 3.988 11 C -0.098 4.098 12 C -0.154 4.154 13 C 0.015 3.985 14 N -0.336 5.336 15 C -0.393 4.393 16 H 0.082 0.918 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.793 3.207 20 H -0.211 1.211 21 H -0.219 1.219 22 H -0.197 1.197 23 C 0.051 3.949 24 C -0.161 4.161 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.323 0.677 29 H 0.251 0.749 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.538 22.111 1.336 23.097 hybrid contribution 1.066 -1.681 -0.350 2.021 sum -5.473 20.430 0.986 21.174 Atomic orbital electron populations 1.20406 0.84843 1.04380 1.04142 1.22367 0.99148 0.86716 0.96905 1.70400 1.02549 1.31367 1.21143 1.29604 0.98239 0.78954 0.92681 1.84507 1.28593 1.25469 1.69302 1.22663 0.82334 0.95756 1.18515 1.16439 0.85528 0.81982 0.76838 1.90843 1.16861 1.82538 1.52376 1.45873 1.10258 1.06069 1.73160 1.21434 0.96657 0.78286 1.02408 1.21159 0.95590 0.94289 0.98762 1.21932 0.97274 0.99355 0.96838 1.21063 0.94686 0.84517 0.98282 1.44339 1.58172 1.02912 1.28196 1.19492 1.40421 0.88665 0.90737 0.91812 1.25769 1.00771 1.00928 0.97139 1.70171 1.54514 1.20471 1.12910 0.85327 0.77697 0.79096 0.78630 1.21134 1.21876 1.19666 1.20569 0.89322 0.97709 0.87260 1.21976 0.98347 0.94474 1.01318 0.89347 0.89252 0.89783 0.67654 0.74885 0.90888 0.91581 0.90522 0.92889 0.90122 0.96482 0.93075 0.94123 0.98412 0.93019 0.90986 0.92882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 9.87 71.24 0.70 -0.82 16 2 C 0.07 1.56 7.16 41.83 0.30 1.86 16 3 N -0.53 -9.90 11.26 -303.13 -3.41 -13.31 16 4 C 0.23 2.70 13.21 130.42 1.72 4.42 16 5 O -0.19 -3.23 10.57 -7.00 -0.07 -3.31 16 6 C -0.14 -3.03 7.18 24.05 0.17 -2.86 16 7 C 0.61 15.23 7.79 86.46 0.67 15.90 16 8 O -0.55 -16.52 14.79 -4.30 -0.06 -16.58 16 9 N -0.70 -15.67 5.27 -467.02 -2.46 -18.13 16 10 C 0.14 3.36 5.06 86.38 0.44 3.80 16 11 C -0.08 -2.25 2.19 -10.77 -0.02 -2.27 16 12 C -0.12 -3.45 5.25 30.67 0.16 -3.29 16 13 C 0.14 5.48 6.52 86.36 0.56 6.05 16 14 N -0.61 -30.16 2.99 -699.09 -2.09 -32.25 16 15 C -0.26 -14.40 9.58 84.03 0.81 -13.59 16 16 H 0.06 3.42 7.88 -2.91 -0.02 3.39 16 17 C -0.05 -2.83 4.92 84.86 0.42 -2.41 16 18 N -0.93 -55.07 11.19 21.65 0.24 -54.83 16 19 Si 0.96 44.78 29.59 68.60 2.03 46.81 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 23 C 0.18 8.31 5.30 86.36 0.46 8.76 16 24 C -0.12 -4.27 5.36 30.67 0.16 -4.10 16 25 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.08 1.80 6.47 -2.39 -0.02 1.79 16 28 H 0.31 -0.35 8.06 -2.91 -0.02 -0.37 16 29 H 0.41 7.76 7.45 -92.72 -0.69 7.07 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.90 7.15 -2.39 -0.02 1.88 16 35 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 37 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 38 H 0.00 -0.11 8.14 -2.38 -0.02 -0.13 16 39 H 0.05 2.79 6.06 -2.39 -0.01 2.77 16 40 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -70.99 337.10 1.08 -69.91 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.35 Total: 10.25 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 6.55 Total: 11.44 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -7.72 Total: -118.52 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.14 Total: -19.89 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -70.99 1.08 -69.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362532589.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.710 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds