Wall clock time and date at job start Fri Apr 10 2020 17:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38044 * 126.29321 * 2 1 4 4 C 1.47423 * 126.41143 * 0.05725 * 3 2 1 5 5 O 1.21601 * 120.00302 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99771 * 179.97438 * 4 3 2 7 7 C 1.47064 * 136.05459 * 359.63776 * 6 4 3 8 8 C 1.53246 * 88.08111 * 207.19810 * 7 6 4 9 9 O 1.42904 * 114.19707 * 87.72505 * 8 7 6 10 10 C 1.50696 * 114.32744 * 220.47161 * 8 7 6 11 11 H 1.07992 * 120.00413 * 99.23607 * 10 8 7 12 12 C 1.37883 * 119.99643 * 279.23656 * 10 8 7 13 13 N 1.31512 * 120.00157 * 10.18417 * 12 10 8 14 14 Si 1.86804 * 119.99823 * 190.18881 * 12 10 8 15 15 H 1.48498 * 109.47194 * 84.99497 * 14 12 10 16 16 H 1.48501 * 109.47014 * 204.99363 * 14 12 10 17 17 H 1.48502 * 109.46989 * 324.99115 * 14 12 10 18 18 C 1.47063 * 136.05778 * 179.97438 * 6 4 3 19 19 C 1.41288 * 107.17103 * 180.02562 * 3 2 1 20 20 N 1.30456 * 108.02149 * 0.26812 * 19 3 2 21 21 N 1.34259 * 126.28985 * 180.02562 * 2 1 3 22 22 C 1.46507 * 125.75235 * 359.97438 * 21 2 1 23 23 C 1.53001 * 109.46810 * 119.99912 * 22 21 2 24 24 C 1.53000 * 109.46828 * 239.99554 * 22 21 2 25 25 H 1.09004 * 109.47484 * 89.97753 * 1 2 3 26 26 H 1.08999 * 109.47477 * 209.97514 * 1 2 3 27 27 H 1.08997 * 109.47230 * 329.97735 * 1 2 3 28 28 H 1.08997 * 113.46903 * 321.92486 * 7 6 4 29 29 H 1.08999 * 113.47153 * 92.37186 * 7 6 4 30 30 H 0.96699 * 113.99894 * 90.31815 * 9 8 7 31 31 H 0.97000 * 120.00513 * 180.02562 * 13 12 10 32 32 H 1.09001 * 113.47151 * 267.62688 * 18 6 4 33 33 H 1.09000 * 113.46517 * 38.00892 * 18 6 4 34 34 H 1.07994 * 125.99189 * 179.97438 * 19 3 2 35 35 H 1.08991 * 109.47101 * 0.02562 * 22 21 2 36 36 H 1.09004 * 109.47668 * 59.99946 * 23 22 21 37 37 H 1.09004 * 109.46872 * 179.97438 * 23 22 21 38 38 H 1.08994 * 109.47497 * 299.99308 * 23 22 21 39 39 H 1.08998 * 109.46968 * 60.00435 * 24 22 21 40 40 H 1.09004 * 109.47085 * 180.02562 * 24 22 21 41 41 H 1.08999 * 109.47138 * 300.00277 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 0.0012 5 8 0.6996 2.7877 0.0018 6 7 2.8000 3.5106 0.0016 7 6 4.2681 3.5965 0.0075 8 6 4.1343 4.9559 0.7022 9 8 4.0615 4.8808 2.1274 10 6 5.1001 6.0026 0.2094 11 1 4.7755 6.7420 -0.5076 12 6 6.3982 6.0161 0.6741 13 7 6.8522 5.0081 1.3864 14 14 7.5120 7.4662 0.2918 15 1 7.2918 8.5377 1.2962 16 1 8.9298 7.0273 0.3390 17 1 7.1997 7.9864 -1.0636 18 6 2.7682 4.9809 0.0022 19 6 3.6590 0.6498 -0.0006 20 7 3.6339 -0.6545 -0.0067 21 7 2.3016 -1.0822 -0.0005 22 6 1.8499 -2.4759 -0.0006 23 6 2.3783 -3.1831 -1.2502 24 6 2.3794 -3.1836 1.2483 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3633 0.8897 0.5142 28 1 4.7447 2.8384 0.6288 29 1 4.7033 3.6596 -0.9898 30 1 4.9210 4.9269 2.5681 31 1 7.7652 5.0177 1.7136 32 1 2.8002 5.4163 -0.9966 33 1 1.9713 5.3976 0.6181 34 1 4.5449 1.2675 -0.0012 35 1 0.7604 -2.5047 -0.0006 36 1 3.4680 -3.1543 -1.2507 37 1 2.0427 -4.2202 -1.2500 38 1 2.0012 -2.6790 -2.1399 39 1 2.0029 -2.6797 2.1385 40 1 2.0437 -4.2207 1.2481 41 1 3.4690 -3.1547 1.2479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408160630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:41 Heat of formation + Delta-G solvation = 25.370938 kcal Electronic energy + Delta-G solvation = -23922.644226 eV Core-core repulsion = 20419.736610 eV Total energy + Delta-G solvation = -3502.907616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29847 -39.27815 -37.14328 -35.70636 -33.98021 -32.26651 -32.24290 -30.29962 -28.57275 -27.55865 -26.96560 -25.21212 -25.12997 -22.90194 -21.91448 -19.82116 -19.29460 -18.21514 -17.40987 -16.68765 -15.83387 -15.46632 -15.39541 -14.93951 -14.52878 -14.41006 -14.16455 -13.86925 -13.33701 -13.17026 -12.97989 -12.70148 -12.67129 -12.44076 -12.37482 -12.17317 -12.07619 -11.89829 -11.71526 -11.59208 -11.39232 -11.03630 -10.85572 -10.54331 -10.47027 -10.22051 -9.47621 -9.21472 -9.02503 -8.84690 -8.40636 -8.27039 -7.69247 -6.36622 -4.45577 1.76334 2.40373 2.54287 3.18300 3.26207 3.28214 3.73742 4.03971 4.22338 4.28237 4.63317 4.63748 4.72589 4.86369 4.98726 5.09448 5.25347 5.30572 5.45086 5.46658 5.48912 5.57578 5.60501 5.72837 5.81814 5.88668 5.99457 6.03833 6.19325 6.29243 6.48676 6.60905 6.65164 6.78610 6.89005 7.03978 7.14185 7.64645 7.80110 7.82945 8.57225 8.65377 8.96768 9.25257 9.30374 10.69538 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024708 B = 0.003901 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.981998 B = 7176.309205 C = 7852.591790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.143 3.857 3 C -0.278 4.278 4 C 0.615 3.385 5 O -0.574 6.574 6 N -0.632 5.632 7 C 0.077 3.923 8 C 0.239 3.761 9 O -0.566 6.566 10 C -0.540 4.540 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.889 5.889 14 Si 0.902 3.098 15 H -0.276 1.276 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.111 3.889 19 C 0.083 3.917 20 N -0.301 5.301 21 N -0.361 5.361 22 C 0.152 3.848 23 C -0.160 4.160 24 C -0.161 4.161 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.386 0.614 31 H 0.271 0.729 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.195 0.805 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.844 -14.224 -2.897 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.012 3.988 3 C -0.293 4.293 4 C 0.406 3.594 5 O -0.456 6.456 6 N -0.364 5.364 7 C -0.045 4.045 8 C 0.197 3.803 9 O -0.374 6.374 10 C -0.578 4.578 11 H 0.090 0.910 12 C -0.130 4.130 13 N -0.527 5.527 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.011 4.011 19 C -0.104 4.104 20 N -0.119 5.119 21 N -0.142 5.142 22 C 0.051 3.949 23 C -0.218 4.218 24 C -0.219 4.219 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.125 0.875 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.237 0.763 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.084 0.916 34 H 0.212 0.788 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.406 -15.602 -2.930 17.518 hybrid contribution 1.015 1.375 -0.118 1.713 sum -6.392 -14.227 -3.048 15.892 Atomic orbital electron populations 1.20630 0.86518 1.04443 1.03734 1.21419 0.94663 0.86396 0.96354 1.20025 0.92851 0.93452 1.22926 1.16633 0.84140 0.82724 0.75895 1.90642 1.16317 1.84192 1.54480 1.49448 1.08965 1.07098 1.70855 1.24135 0.77776 1.01606 1.01030 1.19490 0.90368 0.90647 0.79798 1.86097 1.36201 1.96169 1.18942 1.21354 0.94959 1.14499 1.27004 0.90956 1.25068 0.97747 0.95915 0.94248 1.69761 1.17639 1.29097 1.36192 0.86437 0.79169 0.82333 0.79122 1.20183 1.21096 1.19638 1.23273 0.99249 0.78635 0.99957 1.24518 0.98012 0.91685 0.96178 1.77100 0.95950 1.13268 1.25631 1.48626 1.04179 1.05425 1.55985 1.21344 0.99292 0.76810 0.97448 1.22121 1.03217 1.00176 0.96264 1.22130 1.03253 1.00171 0.96327 0.89970 0.91650 0.87495 0.91363 0.90063 0.76319 0.91883 0.89714 0.91643 0.78848 0.88088 0.90886 0.90739 0.92057 0.91980 0.90735 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 9.40 36.00 0.34 -0.86 16 2 C 0.14 2.27 7.01 -81.60 -0.57 1.69 16 3 C -0.28 -5.25 6.13 -105.07 -0.64 -5.90 16 4 C 0.61 13.33 8.06 -12.52 -0.10 13.23 16 5 O -0.57 -13.29 15.61 5.28 0.08 -13.21 16 6 N -0.63 -13.86 3.69 -186.65 -0.69 -14.54 16 7 C 0.08 1.69 6.51 -8.64 -0.06 1.63 16 8 C 0.24 5.69 1.41 -91.38 -0.13 5.56 16 9 O -0.57 -14.33 13.56 -35.23 -0.48 -14.81 16 10 C -0.54 -13.39 8.65 -34.44 -0.30 -13.68 16 11 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 12 C 0.07 1.82 5.21 -17.82 -0.09 1.73 16 13 N -0.89 -22.24 11.81 55.43 0.65 -21.58 16 14 Si 0.90 19.29 29.55 -169.99 -5.02 14.26 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 16 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 18 C 0.11 2.46 8.04 -8.50 -0.07 2.39 16 19 C 0.08 1.50 11.14 -16.98 -0.19 1.31 16 20 N -0.30 -5.03 12.33 30.86 0.38 -4.65 16 21 N -0.36 -5.16 3.25 -50.16 -0.16 -5.32 16 22 C 0.15 1.50 3.62 -67.93 -0.25 1.25 16 23 C -0.16 -1.38 9.44 37.16 0.35 -1.03 16 24 C -0.16 -1.43 9.45 37.16 0.35 -1.08 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.61 7.07 -51.93 -0.37 0.24 16 27 H 0.11 1.59 6.50 -51.93 -0.34 1.25 16 28 H 0.07 1.49 6.17 -51.93 -0.32 1.17 16 29 H 0.08 1.71 8.10 -51.93 -0.42 1.29 16 30 H 0.39 9.73 7.09 45.56 0.32 10.06 16 31 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 32 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 33 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.20 3.43 5.22 -52.49 -0.27 3.15 16 35 H 0.10 0.77 6.63 -51.93 -0.34 0.42 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -29.58 341.33 -6.54 -36.11 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.09 Total: 12.35 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: -1.35 Total: 6.25 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.18 Total: -46.10 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.40 Total: -28.02 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.58 -6.54 -36.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408160630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.482 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds