Wall clock time and date at job start Fri Apr 10 2020 17:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.46519 * 2 1 4 4 O 1.33503 * 126.82730 * 270.16741 * 3 2 1 5 5 N 1.20656 * 113.15329 * 180.31612 * 4 3 2 6 6 C 1.30021 * 112.30334 * 359.71297 * 5 4 3 7 7 C 1.50703 * 127.33499 * 179.97438 * 6 5 4 8 8 C 1.37366 * 126.83136 * 90.00245 * 3 2 1 9 9 C 1.47392 * 128.56154 * 359.97438 * 8 3 2 10 10 O 1.21603 * 120.00063 * 269.70219 * 9 8 3 11 11 N 1.34784 * 119.99811 * 89.70497 * 9 8 3 12 12 C 1.46958 * 120.59345 * 359.71957 * 11 9 8 13 13 C 1.53809 * 108.40170 * 124.75978 * 12 11 9 14 14 N 1.46964 * 108.57943 * 49.63305 * 13 12 11 15 15 C 1.36938 * 120.59291 * 124.62942 * 14 13 12 16 16 H 1.08003 * 119.99958 * 208.17754 * 15 14 13 17 17 C 1.38811 * 120.00299 * 28.17684 * 15 14 13 18 18 N 1.31626 * 119.99620 * 17.56686 * 17 15 14 19 19 Si 1.86798 * 120.00297 * 197.57174 * 17 15 14 20 20 H 1.48501 * 109.46925 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47351 * 119.99653 * 19 17 15 22 22 H 1.48501 * 109.47008 * 239.99760 * 19 17 15 23 23 C 1.46960 * 118.81253 * 304.64794 * 14 13 12 24 24 C 1.46964 * 120.59299 * 179.97438 * 11 9 8 25 25 H 1.09006 * 109.46387 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47499 * 299.99599 * 1 2 3 27 27 H 1.08991 * 109.47674 * 60.00587 * 1 2 3 28 28 H 1.08996 * 109.47336 * 240.00075 * 2 1 3 29 29 H 1.08997 * 109.47264 * 119.99285 * 2 1 3 30 30 H 1.08994 * 109.47096 * 270.04627 * 7 6 5 31 31 H 1.08997 * 109.46818 * 30.04619 * 7 6 5 32 32 H 1.08995 * 109.47021 * 150.04392 * 7 6 5 33 33 H 1.09006 * 109.60704 * 244.54158 * 12 11 9 34 34 H 1.09001 * 109.61605 * 5.05189 * 12 11 9 35 35 H 1.09006 * 109.74010 * 289.84629 * 13 12 11 36 36 H 1.08999 * 109.53603 * 169.30212 * 13 12 11 37 37 H 0.97004 * 119.99372 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.61542 * 295.48493 * 23 14 13 39 39 H 1.09004 * 109.75299 * 175.05003 * 23 14 13 40 40 H 1.08999 * 109.61118 * 354.94899 * 24 11 9 41 41 H 1.08996 * 109.61256 * 115.28639 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 8 2.2959 2.1764 -1.0686 5 7 2.6931 3.2794 -0.7834 6 6 2.7608 3.4624 0.5021 7 6 3.2097 4.7057 1.2259 8 6 2.3067 2.1972 1.0995 9 6 2.1824 1.8469 2.5258 10 8 1.1401 2.0587 3.1153 11 7 3.2240 1.2919 3.1766 12 6 4.4876 1.0247 2.4754 13 6 5.6250 1.7198 3.2427 14 7 5.5155 1.3654 4.6647 15 6 6.5735 0.8007 5.3258 16 1 6.3977 0.1461 6.1666 17 6 7.8720 1.0697 4.9152 18 7 8.1162 2.1064 4.1419 19 14 9.2726 -0.0398 5.4600 20 1 8.7376 -1.1268 6.3188 21 1 9.9299 -0.6296 4.2662 22 1 10.2636 0.7554 6.2286 23 6 4.2501 1.6276 5.3646 24 6 3.1146 0.9380 4.5988 25 1 -0.3632 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8900 30 1 4.2849 4.6575 1.3983 31 1 2.9777 5.5821 0.6208 32 1 2.6912 4.7767 2.1820 33 1 4.6678 -0.0498 2.4430 34 1 4.4337 1.4199 1.4610 35 1 5.5403 2.8004 3.1274 36 1 6.5860 1.3822 2.8545 37 1 9.0237 2.2946 3.8553 38 1 4.0674 2.7015 5.4003 39 1 4.3010 1.2312 6.3787 40 1 2.1538 1.2758 4.9870 41 1 3.1961 -0.1428 4.7142 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408320536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:58 Heat of formation + Delta-G solvation = 47.638996 kcal Electronic energy + Delta-G solvation = -24643.124738 eV Core-core repulsion = 21141.182738 eV Total energy + Delta-G solvation = -3501.942001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.80610 -39.59847 -36.86088 -34.90148 -34.48702 -33.87830 -31.51192 -30.44263 -30.05871 -28.72147 -27.14364 -24.95340 -23.87629 -23.32991 -22.71760 -20.84818 -19.85560 -18.89609 -17.88916 -17.43501 -16.61426 -16.00298 -15.72131 -15.19348 -14.81250 -14.41324 -14.19891 -13.75615 -13.48667 -13.44558 -13.30984 -13.24922 -13.12100 -12.94546 -12.58334 -12.40116 -11.77482 -11.74693 -11.57660 -11.40571 -10.92958 -10.91319 -10.81748 -10.56666 -10.32014 -10.11482 -9.99185 -9.85405 -9.68198 -9.25933 -8.67154 -8.37182 -6.79080 -5.91974 -3.36298 1.35869 2.00194 2.61400 2.88538 3.29624 3.37902 3.39380 3.41813 4.16010 4.25660 4.39362 4.73012 4.82842 4.96504 5.05039 5.19467 5.21148 5.28826 5.46175 5.58001 5.60945 5.66142 5.70710 5.71380 5.77151 5.80468 5.86459 6.00979 6.03788 6.08321 6.14430 6.26543 6.34216 6.69912 6.82482 7.11255 7.37477 7.66231 7.74604 8.28267 8.29076 8.36419 9.05384 9.68014 10.24582 11.15952 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.019922 B = 0.004695 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.155745 B = 5961.925004 C = 6233.275448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.044 4.044 3 C 0.009 3.991 4 O 0.094 5.906 5 N -0.359 5.359 6 C 0.058 3.942 7 C -0.079 4.079 8 C -0.231 4.231 9 C 0.592 3.408 10 O -0.545 6.545 11 N -0.583 5.583 12 C 0.082 3.918 13 C 0.160 3.840 14 N -0.590 5.590 15 C -0.256 4.256 16 H 0.069 0.931 17 C 0.004 3.996 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.289 1.289 23 C 0.132 3.868 24 C 0.095 3.905 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.024 0.976 36 H 0.100 0.900 37 H 0.255 0.745 38 H 0.024 0.976 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.221 -2.734 -7.944 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.082 4.082 3 C -0.055 4.055 4 O 0.033 5.967 5 N -0.066 5.066 6 C -0.104 4.104 7 C -0.136 4.136 8 C -0.238 4.238 9 C 0.378 3.622 10 O -0.424 6.424 11 N -0.314 5.314 12 C -0.042 4.042 13 C 0.033 3.967 14 N -0.313 5.313 15 C -0.386 4.386 16 H 0.087 0.913 17 C -0.194 4.194 18 N -0.546 5.546 19 Si 0.733 3.267 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.216 1.216 23 C 0.005 3.995 24 C -0.028 4.028 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.304 -1.828 -8.715 14.390 hybrid contribution 0.870 -0.704 0.886 1.427 sum -10.435 -2.532 -7.828 13.288 Atomic orbital electron populations 1.21787 0.93022 1.02833 1.03156 1.20196 0.97083 0.85939 1.04970 1.24574 0.99563 0.96114 0.85202 1.84496 1.61644 1.17645 1.32926 1.73586 1.17622 0.98764 1.16623 1.24754 0.99905 0.96849 0.88901 1.20243 1.02822 0.91049 0.99492 1.21918 1.11254 0.95253 0.95360 1.16952 0.83513 0.77782 0.83944 1.90758 1.28636 1.55220 1.67746 1.48029 1.12861 1.59145 1.11376 1.22774 0.84651 1.01103 0.95701 1.21238 0.95903 0.95778 0.83738 1.43993 1.09791 1.72140 1.05378 1.19245 0.84461 1.20961 1.13911 0.91340 1.25067 0.97571 0.96634 1.00174 1.70025 1.19793 1.25701 1.39039 0.86213 0.82222 0.80271 0.78004 1.20158 1.21457 1.21637 1.21289 0.86267 0.96830 0.95158 1.22293 1.00935 0.99918 0.79689 0.91113 0.91584 0.92021 0.88806 0.88528 0.89091 0.90149 0.89837 0.91575 0.91487 0.95777 0.88155 0.93488 0.95770 0.91297 0.89793 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.04 -0.44 6.38 -27.88 -0.18 -0.62 16 3 C 0.01 0.12 6.80 -34.63 -0.24 -0.11 16 4 O 0.09 1.35 11.06 18.63 0.21 1.55 16 5 N -0.36 -5.60 12.01 34.78 0.42 -5.19 16 6 C 0.06 0.91 7.57 -79.76 -0.60 0.30 16 7 C -0.08 -1.07 10.49 36.01 0.38 -0.69 16 8 C -0.23 -3.67 4.17 -102.90 -0.43 -4.10 16 9 C 0.59 10.48 7.48 -12.53 -0.09 10.39 16 10 O -0.54 -10.91 16.51 5.27 0.09 -10.82 16 11 N -0.58 -10.32 2.94 -173.52 -0.51 -10.83 16 12 C 0.08 1.47 6.53 -3.37 -0.02 1.45 16 13 C 0.16 3.55 5.53 -3.37 -0.02 3.54 16 14 N -0.59 -13.90 2.97 -171.79 -0.51 -14.41 16 15 C -0.26 -6.63 9.58 -15.06 -0.14 -6.77 16 16 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.12 4.90 -17.43 -0.09 0.03 16 18 N -0.90 -24.88 11.20 55.49 0.62 -24.26 16 19 Si 0.90 20.68 29.59 -169.99 -5.03 15.65 16 20 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 C 0.13 2.64 6.67 -3.62 -0.02 2.61 16 24 C 0.10 1.67 6.59 -3.61 -0.02 1.65 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 1.00 8.11 -51.93 -0.42 0.58 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.13 6.30 -51.93 -0.33 0.80 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 2.48 5.99 -51.93 -0.31 2.17 16 37 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 1.31 7.94 -51.93 -0.41 0.90 16 40 H 0.08 1.43 6.99 -51.93 -0.36 1.06 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 341.29 15.07 5.14 5.14 Total: -1.00 -30.30 341.29 -6.72 -37.02 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.03 Total: -0.52 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.11 Total: 6.66 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: 0.02 Total: -54.69 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.29 Total: -9.27 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.30 -6.72 -37.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408320536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.664 kcal (2) G-P(sol) polarization free energy of solvation -30.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds