Wall clock time and date at job start Fri Apr 10 2020 17:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35316 * 126.13069 * 2 1 4 4 C 1.50700 * 126.03888 * 0.03259 * 3 2 1 5 5 H 1.08997 * 109.87186 * 35.85781 * 4 3 2 6 6 O 1.43746 * 109.88317 * 156.87392 * 4 3 2 7 7 C 1.44576 * 106.87288 * 145.82664 * 6 4 3 8 8 C 1.54999 * 103.58403 * 320.11898 * 7 6 4 9 9 C 1.54109 * 109.87539 * 274.85725 * 4 3 2 10 10 H 1.08999 * 110.48677 * 357.22039 * 9 4 3 11 11 C 1.50699 * 110.48838 * 119.73826 * 9 4 3 12 12 O 1.21300 * 119.99749 * 359.97438 * 11 9 4 13 13 N 1.34774 * 120.00445 * 180.02562 * 11 9 4 14 14 C 1.46508 * 119.99327 * 359.97438 * 13 11 9 15 15 C 1.37089 * 120.00680 * 179.97438 * 13 11 9 16 16 H 1.08003 * 119.99951 * 22.05234 * 15 13 11 17 17 C 1.38945 * 120.00517 * 202.05147 * 15 13 11 18 18 N 1.31421 * 119.99857 * 11.07853 * 17 15 13 19 19 Si 1.86801 * 120.00331 * 191.07616 * 17 15 13 20 20 H 1.48498 * 109.47059 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47247 * 120.00200 * 19 17 15 22 22 H 1.48502 * 109.47005 * 239.99843 * 19 17 15 23 23 C 1.39863 * 107.92445 * 180.14745 * 3 2 1 24 24 N 1.30844 * 108.19947 * 359.59865 * 23 3 2 25 25 N 1.34951 * 126.12775 * 179.71047 * 2 1 3 26 26 C 1.46504 * 126.03294 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46888 * 270.26923 * 1 2 3 28 28 H 1.08997 * 109.46739 * 30.26156 * 1 2 3 29 29 H 1.08993 * 109.47536 * 150.26497 * 1 2 3 30 30 H 1.08999 * 110.63794 * 201.55761 * 7 6 4 31 31 H 1.08998 * 110.64267 * 78.68167 * 7 6 4 32 32 H 1.09001 * 110.90915 * 278.74953 * 8 7 6 33 33 H 1.08995 * 110.90551 * 155.14347 * 8 7 6 34 34 H 1.08998 * 109.47382 * 95.23256 * 14 13 11 35 35 H 1.09006 * 109.46683 * 215.23513 * 14 13 11 36 36 H 1.08998 * 109.46894 * 335.23052 * 14 13 11 37 37 H 0.96996 * 119.99698 * 179.97438 * 18 17 15 38 38 H 1.07998 * 125.90530 * 179.86938 * 23 3 2 39 39 H 1.08994 * 109.47453 * 269.97840 * 26 25 2 40 40 H 1.09001 * 109.47244 * 29.97869 * 26 25 2 41 41 H 1.09002 * 109.46523 * 149.97656 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 1.8434 2.5275 0.0007 5 1 0.9394 2.6256 0.6016 6 8 2.8774 3.3734 0.5314 7 6 2.7990 4.6292 -0.1807 8 6 2.5075 4.2016 -1.6418 9 6 1.5655 2.9892 -1.4431 10 1 1.8092 2.1967 -2.1506 11 6 0.1254 3.4062 -1.5956 12 8 -0.6271 3.3462 -0.6461 13 7 -0.3267 3.8448 -2.7871 14 6 0.5821 3.9167 -3.9339 15 6 -1.6369 4.2236 -2.9260 16 1 -2.2099 4.5143 -2.0579 17 6 -2.2277 4.2337 -4.1835 18 7 -1.6117 3.6792 -5.2034 19 14 -3.8976 5.0355 -4.4246 20 1 -4.3751 5.5836 -3.1297 21 1 -3.7800 6.1362 -5.4144 22 1 -4.8650 4.0243 -4.9216 23 6 3.6335 0.6559 -0.0034 24 7 3.6333 -0.6525 0.0033 25 7 2.3027 -1.0900 0.0055 26 6 1.8538 -2.4846 0.0131 27 1 -0.3633 0.0048 1.0277 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3634 -0.8923 -0.5097 30 1 3.7460 5.1654 -0.1194 31 1 1.9863 5.2420 0.2092 32 1 3.4244 3.9025 -2.1498 33 1 2.0045 4.9997 -2.1876 34 1 0.4879 3.0088 -4.5297 35 1 0.3265 4.7814 -4.5464 36 1 1.6081 4.0135 -3.5789 37 1 -2.0243 3.6859 -6.0812 38 1 4.5084 1.2890 -0.0063 39 1 1.7433 -2.8251 1.0425 40 1 0.8950 -2.5605 -0.4997 41 1 2.5894 -3.1057 -0.4981 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408387079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:00 Heat of formation + Delta-G solvation = 12.484965 kcal Electronic energy + Delta-G solvation = -24691.497028 eV Core-core repulsion = 21188.030634 eV Total energy + Delta-G solvation = -3503.466394 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21388 -39.55904 -37.50120 -34.73501 -33.32608 -32.44944 -32.17571 -30.99607 -29.01086 -26.56958 -26.46980 -26.02892 -24.56315 -22.62413 -21.71549 -20.45678 -19.29112 -18.72645 -16.94264 -16.67141 -16.06698 -15.47579 -15.36393 -15.32811 -14.62978 -14.33131 -14.07895 -13.87132 -13.84287 -13.12048 -13.04586 -12.70691 -12.49552 -12.42361 -12.23658 -12.04889 -11.73133 -11.60501 -11.47671 -11.23942 -11.02697 -10.90031 -10.68098 -10.60430 -10.36768 -10.31362 -10.15562 -9.31176 -9.07858 -9.03582 -8.45358 -7.94695 -7.72080 -6.33324 -3.91463 2.04532 2.66265 2.99969 3.11742 3.22866 3.29417 3.81747 4.08392 4.24289 4.67832 4.81160 4.92691 4.97580 5.10583 5.16286 5.19450 5.30099 5.32405 5.40513 5.43309 5.65730 5.71672 5.77872 5.85336 5.94673 6.03007 6.07580 6.21355 6.24811 6.33715 6.37415 6.52116 6.60348 6.86282 6.89884 7.17592 7.23609 7.30605 7.53409 7.92301 8.09585 8.44664 9.14760 9.39744 9.94296 10.68878 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018306 B = 0.005045 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.153170 B = 5548.891471 C = 6337.020016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.100 3.900 3 C -0.234 4.234 4 C 0.168 3.832 5 H 0.099 0.901 6 O -0.373 6.373 7 C 0.049 3.951 8 C -0.147 4.147 9 C -0.125 4.125 10 H 0.094 0.906 11 C 0.453 3.547 12 O -0.587 6.587 13 N -0.441 5.441 14 C 0.102 3.898 15 C -0.305 4.305 16 H 0.100 0.900 17 C 0.030 3.970 18 N -0.883 5.883 19 Si 0.925 3.075 20 H -0.268 1.268 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.073 3.927 24 N -0.311 5.311 25 N -0.379 5.379 26 C 0.104 3.896 27 H 0.079 0.921 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.037 0.963 37 H 0.266 0.734 38 H 0.182 0.818 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.697 -5.323 5.139 10.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.027 4.027 3 C -0.245 4.245 4 C 0.110 3.890 5 H 0.117 0.883 6 O -0.292 6.292 7 C -0.028 4.028 8 C -0.185 4.185 9 C -0.147 4.147 10 H 0.112 0.888 11 C 0.241 3.759 12 O -0.472 6.472 13 N -0.159 5.159 14 C -0.042 4.042 15 C -0.433 4.433 16 H 0.118 0.882 17 C -0.173 4.173 18 N -0.522 5.522 19 Si 0.752 3.248 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.113 4.113 24 N -0.131 5.131 25 N -0.162 5.162 26 C -0.038 4.038 27 H 0.098 0.902 28 H 0.122 0.878 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.199 0.801 39 H 0.089 0.911 40 H 0.104 0.896 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.097 -6.649 5.533 11.848 hybrid contribution -1.329 1.007 -0.777 1.839 sum 6.768 -5.642 4.756 10.013 Atomic orbital electron populations 1.20604 0.86800 1.04852 1.03537 1.20803 0.94644 0.86682 1.00536 1.19716 0.92745 0.94591 1.17465 1.20792 0.90614 0.84781 0.92854 0.88343 1.88822 1.54903 1.24759 1.60722 1.23537 1.01521 0.87200 0.90505 1.23241 0.99437 0.97965 0.97841 1.22532 0.95321 0.98618 0.98200 0.88789 1.19715 0.88551 0.83095 0.84548 1.90481 1.58056 1.59427 1.39279 1.43529 1.09692 1.54766 1.07874 1.21734 0.89854 1.03498 0.89070 1.19714 0.87033 1.41854 0.94709 0.88246 1.25342 0.99530 0.96808 0.95578 1.70019 1.39123 1.42095 1.00989 0.85878 0.81614 0.78774 0.78550 1.19201 1.20694 1.20769 1.23614 0.97769 0.91457 0.98472 1.77298 0.96546 1.13040 1.26255 1.48337 1.03992 1.05724 1.58193 1.21769 1.00969 0.78071 1.02999 0.90217 0.87849 0.91551 0.89299 0.92005 0.90315 0.89329 0.92165 0.91714 0.94453 0.92341 0.80059 0.91062 0.89606 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.83 36.01 0.35 -1.13 16 2 C 0.10 1.63 6.93 -82.26 -0.57 1.06 16 3 C -0.23 -4.03 5.01 -105.06 -0.53 -4.56 16 4 C 0.17 3.06 3.05 -27.30 -0.08 2.98 16 5 H 0.10 2.03 6.35 -51.93 -0.33 1.70 16 6 O -0.37 -6.39 10.79 -35.23 -0.38 -6.77 16 7 C 0.05 0.73 7.72 38.21 0.29 1.03 16 8 C -0.15 -2.28 5.14 -24.72 -0.13 -2.41 16 9 C -0.12 -2.31 2.16 -90.24 -0.19 -2.51 16 10 H 0.09 1.76 7.62 -51.93 -0.40 1.37 16 11 C 0.45 10.46 6.61 -10.99 -0.07 10.39 16 12 O -0.59 -15.09 14.02 5.54 0.08 -15.01 16 13 N -0.44 -10.84 3.00 -122.19 -0.37 -11.21 16 14 C 0.10 2.22 8.07 59.85 0.48 2.70 16 15 C -0.31 -8.22 9.30 -14.94 -0.14 -8.36 16 16 H 0.10 2.81 7.40 -52.48 -0.39 2.42 16 17 C 0.03 0.78 5.14 -17.47 -0.09 0.69 16 18 N -0.88 -23.02 10.55 55.50 0.59 -22.43 16 19 Si 0.92 20.30 29.57 -169.99 -5.03 15.27 16 20 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.07 1.18 11.49 -17.36 -0.20 0.98 16 24 N -0.31 -5.11 12.58 30.62 0.39 -4.73 16 25 N -0.38 -5.67 4.01 -63.88 -0.26 -5.93 16 26 C 0.10 1.04 11.27 59.85 0.67 1.71 16 27 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.10 1.90 6.59 -51.93 -0.34 1.55 16 29 H 0.07 0.82 7.08 -51.93 -0.37 0.45 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.43 6.37 -51.93 -0.33 1.10 16 34 H 0.06 1.39 7.37 -51.93 -0.38 1.01 16 35 H 0.06 1.48 7.23 -51.93 -0.38 1.10 16 36 H 0.04 0.67 4.36 -51.93 -0.23 0.45 16 37 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 38 H 0.18 2.55 8.06 -52.49 -0.42 2.12 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 0.71 7.05 -51.93 -0.37 0.34 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 330.19 15.07 4.98 4.98 Total: -1.00 -31.50 330.19 -5.80 -37.30 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.60 Total: 5.96 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -0.20 Total: 2.57 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.35 Total: -44.29 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.30 Total: -21.79 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.50 -5.80 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408387079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.785 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds