Wall clock time and date at job start Fri Apr 10 2020 17:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35316 * 126.13069 * 2 1 4 4 C 1.50700 * 126.03888 * 0.03259 * 3 2 1 5 5 H 1.08997 * 109.87186 * 35.85781 * 4 3 2 6 6 O 1.43746 * 109.88317 * 156.87392 * 4 3 2 7 7 C 1.44576 * 106.87288 * 145.82664 * 6 4 3 8 8 C 1.54999 * 103.58403 * 320.11898 * 7 6 4 9 9 C 1.54109 * 109.87539 * 274.85725 * 4 3 2 10 10 H 1.08999 * 110.48677 * 357.22039 * 9 4 3 11 11 C 1.50699 * 110.48838 * 119.73826 * 9 4 3 12 12 O 1.21300 * 119.99749 * 359.97438 * 11 9 4 13 13 N 1.34774 * 120.00445 * 180.02562 * 11 9 4 14 14 C 1.46508 * 119.99327 * 359.97438 * 13 11 9 15 15 C 1.37089 * 120.00680 * 179.97438 * 13 11 9 16 16 H 1.08003 * 119.99951 * 22.05234 * 15 13 11 17 17 C 1.38945 * 120.00517 * 202.05147 * 15 13 11 18 18 N 1.31421 * 119.99857 * 11.07853 * 17 15 13 19 19 Si 1.86801 * 120.00331 * 191.07616 * 17 15 13 20 20 H 1.48498 * 109.47059 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47247 * 120.00200 * 19 17 15 22 22 H 1.48502 * 109.47005 * 239.99843 * 19 17 15 23 23 C 1.39863 * 107.92445 * 180.14745 * 3 2 1 24 24 N 1.30844 * 108.19947 * 359.59865 * 23 3 2 25 25 N 1.34951 * 126.12775 * 179.71047 * 2 1 3 26 26 C 1.46504 * 126.03294 * 359.97438 * 25 2 1 27 27 H 1.09000 * 109.46888 * 270.26923 * 1 2 3 28 28 H 1.08997 * 109.46739 * 30.26156 * 1 2 3 29 29 H 1.08993 * 109.47536 * 150.26497 * 1 2 3 30 30 H 1.08999 * 110.63794 * 201.55761 * 7 6 4 31 31 H 1.08998 * 110.64267 * 78.68167 * 7 6 4 32 32 H 1.09001 * 110.90915 * 278.74953 * 8 7 6 33 33 H 1.08995 * 110.90551 * 155.14347 * 8 7 6 34 34 H 1.08998 * 109.47382 * 95.23256 * 14 13 11 35 35 H 1.09006 * 109.46683 * 215.23513 * 14 13 11 36 36 H 1.08998 * 109.46894 * 335.23052 * 14 13 11 37 37 H 0.96996 * 119.99698 * 179.97438 * 18 17 15 38 38 H 1.07998 * 125.90530 * 179.86938 * 23 3 2 39 39 H 1.08994 * 109.47453 * 269.97840 * 26 25 2 40 40 H 1.09001 * 109.47244 * 29.97869 * 26 25 2 41 41 H 1.09002 * 109.46523 * 149.97656 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0929 0.0000 4 6 1.8434 2.5275 0.0007 5 1 0.9394 2.6256 0.6016 6 8 2.8774 3.3734 0.5314 7 6 2.7990 4.6292 -0.1807 8 6 2.5075 4.2016 -1.6418 9 6 1.5655 2.9892 -1.4431 10 1 1.8092 2.1967 -2.1506 11 6 0.1254 3.4062 -1.5956 12 8 -0.6271 3.3462 -0.6461 13 7 -0.3267 3.8448 -2.7871 14 6 0.5821 3.9167 -3.9339 15 6 -1.6369 4.2236 -2.9260 16 1 -2.2099 4.5143 -2.0579 17 6 -2.2277 4.2337 -4.1835 18 7 -1.6117 3.6792 -5.2034 19 14 -3.8976 5.0355 -4.4246 20 1 -4.3751 5.5836 -3.1297 21 1 -3.7800 6.1362 -5.4144 22 1 -4.8650 4.0243 -4.9216 23 6 3.6335 0.6559 -0.0034 24 7 3.6333 -0.6525 0.0033 25 7 2.3027 -1.0900 0.0055 26 6 1.8538 -2.4846 0.0131 27 1 -0.3633 0.0048 1.0277 28 1 -0.3633 0.8876 -0.5179 29 1 -0.3634 -0.8923 -0.5097 30 1 3.7460 5.1654 -0.1194 31 1 1.9863 5.2420 0.2092 32 1 3.4244 3.9025 -2.1498 33 1 2.0045 4.9997 -2.1876 34 1 0.4879 3.0088 -4.5297 35 1 0.3265 4.7814 -4.5464 36 1 1.6081 4.0135 -3.5789 37 1 -2.0243 3.6859 -6.0812 38 1 4.5084 1.2890 -0.0063 39 1 1.7433 -2.8251 1.0425 40 1 0.8950 -2.5605 -0.4997 41 1 2.5894 -3.1057 -0.4981 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408387079.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:59 Heat of formation + Delta-G solvation = -8.185315 kcal Electronic energy + Delta-G solvation = -24692.393358 eV Core-core repulsion = 21188.030634 eV Total energy + Delta-G solvation = -3504.362724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45294 -41.10308 -39.12795 -36.65749 -34.41217 -34.04410 -33.60148 -32.63003 -30.23473 -28.27793 -27.67606 -27.38319 -26.32530 -24.01387 -23.15921 -21.64884 -20.70847 -20.24228 -18.89597 -17.99553 -17.62270 -17.16607 -16.64217 -16.51406 -16.19249 -15.82125 -15.65436 -15.57543 -15.10546 -14.36032 -14.30843 -14.13441 -13.80479 -13.67306 -13.54675 -13.37158 -13.25278 -13.17343 -12.93422 -12.78557 -12.65897 -12.43807 -12.39059 -12.10892 -12.03613 -11.82555 -11.56571 -11.02113 -10.68729 -10.26355 -10.18620 -9.67878 -9.24627 -8.29853 -5.96429 0.83013 1.36243 1.42138 1.55397 1.61384 1.73831 2.01771 2.27835 2.88663 3.10569 3.13747 3.61896 3.68223 3.74512 3.90017 3.94058 4.17798 4.22775 4.33883 4.37940 4.40113 4.45424 4.56173 4.62809 4.66113 4.70047 4.76651 4.88617 4.95885 5.03678 5.04808 5.07666 5.13977 5.26489 5.41733 5.47158 5.68123 5.92502 6.08873 6.12146 6.49710 6.71417 7.18193 7.49255 8.04322 8.70567 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.018306 B = 0.005045 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.153170 B = 5548.891471 C = 6337.020016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.094 3.906 3 C -0.257 4.257 4 C 0.179 3.821 5 H 0.066 0.934 6 O -0.376 6.376 7 C 0.048 3.952 8 C -0.142 4.142 9 C -0.116 4.116 10 H 0.095 0.905 11 C 0.451 3.549 12 O -0.620 6.620 13 N -0.457 5.457 14 C 0.114 3.886 15 C -0.338 4.338 16 H 0.074 0.926 17 C -0.002 4.002 18 N -0.898 5.898 19 Si 0.987 3.013 20 H -0.273 1.273 21 H -0.268 1.268 22 H -0.277 1.277 23 C 0.071 3.929 24 N -0.325 5.325 25 N -0.376 5.376 26 C 0.091 3.909 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.046 0.954 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.272 0.728 38 H 0.200 0.800 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.856 -5.839 4.754 11.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.035 4.035 3 C -0.269 4.269 4 C 0.120 3.880 5 H 0.084 0.916 6 O -0.295 6.295 7 C -0.029 4.029 8 C -0.180 4.180 9 C -0.138 4.138 10 H 0.113 0.887 11 C 0.241 3.759 12 O -0.507 6.507 13 N -0.175 5.175 14 C -0.029 4.029 15 C -0.466 4.466 16 H 0.092 0.908 17 C -0.203 4.203 18 N -0.538 5.538 19 Si 0.811 3.189 20 H -0.198 1.198 21 H -0.193 1.193 22 H -0.202 1.202 23 C -0.114 4.114 24 N -0.146 5.146 25 N -0.159 5.159 26 C -0.049 4.049 27 H 0.109 0.891 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.148 0.852 31 H 0.064 0.936 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.217 0.783 39 H 0.108 0.892 40 H 0.122 0.878 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.281 -7.185 5.136 12.811 hybrid contribution -1.701 1.099 -0.598 2.111 sum 7.581 -6.085 4.538 10.728 Atomic orbital electron populations 1.20510 0.86347 1.04149 1.04072 1.20967 0.95089 0.87204 1.00203 1.19756 0.93682 0.94189 1.19264 1.20458 0.89873 0.85934 0.91727 0.91606 1.88821 1.54129 1.25409 1.61181 1.23712 1.03164 0.86415 0.89561 1.23289 0.99786 0.96203 0.98690 1.22431 0.92637 0.99952 0.98790 0.88684 1.20479 0.90290 0.81628 0.83540 1.90452 1.59629 1.60320 1.40335 1.43740 1.09494 1.55308 1.08993 1.21648 0.91284 1.01888 0.88045 1.19652 0.88487 1.43944 0.94566 0.90820 1.26045 1.02664 0.96751 0.94880 1.70097 1.40292 1.42084 1.01281 0.84968 0.77527 0.78149 0.78274 1.19750 1.19286 1.20231 1.23864 0.97851 0.91591 0.98103 1.77251 0.97506 1.13179 1.26688 1.48693 1.03292 1.06997 1.56887 1.22191 1.02161 0.75755 1.04763 0.89074 0.91679 0.88982 0.85236 0.93579 0.86988 0.89893 0.93867 0.93141 0.90610 0.91856 0.78322 0.89171 0.87796 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.75 9.83 71.24 0.70 -2.05 16 2 C 0.09 2.98 6.93 41.40 0.29 3.27 16 3 C -0.26 -8.73 5.01 -20.15 -0.10 -8.83 16 4 C 0.18 6.54 3.05 30.22 0.09 6.63 16 5 H 0.07 2.84 6.35 -2.39 -0.02 2.82 16 6 O -0.38 -12.45 10.79 -148.98 -1.61 -14.06 16 7 C 0.05 1.33 7.72 72.67 0.56 1.89 16 8 C -0.14 -4.13 5.14 31.90 0.16 -3.97 16 9 C -0.12 -4.29 2.16 -10.55 -0.02 -4.31 16 10 H 0.10 3.51 7.62 -2.39 -0.02 3.49 16 11 C 0.45 21.45 6.61 87.66 0.58 22.02 16 12 O -0.62 -33.47 14.02 -3.09 -0.04 -33.52 16 13 N -0.46 -23.04 3.00 -658.87 -1.98 -25.02 16 14 C 0.11 4.98 8.07 127.77 1.03 6.01 16 15 C -0.34 -18.82 9.30 84.04 0.78 -18.04 16 16 H 0.07 4.38 7.40 -2.91 -0.02 4.36 16 17 C 0.00 -0.10 5.14 84.92 0.44 0.34 16 18 N -0.90 -47.00 10.55 21.66 0.23 -46.77 16 19 Si 0.99 41.85 29.57 68.60 2.03 43.88 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 23 C 0.07 2.20 11.49 85.23 0.98 3.17 16 24 N -0.33 -10.15 12.58 -57.03 -0.72 -10.87 16 25 N -0.38 -10.59 4.01 -356.02 -1.43 -12.02 16 26 C 0.09 1.59 11.27 127.77 1.44 3.03 16 27 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.06 2.48 6.59 -2.39 -0.02 2.47 16 29 H 0.09 2.17 7.08 -2.39 -0.02 2.16 16 30 H 0.13 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.08 2.54 6.37 -2.39 -0.02 2.53 16 34 H 0.04 2.01 7.37 -2.39 -0.02 1.99 16 35 H 0.05 2.31 7.23 -2.38 -0.02 2.29 16 36 H 0.08 2.64 4.36 -2.39 -0.01 2.63 16 37 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 38 H 0.20 5.16 8.06 -2.91 -0.02 5.14 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 1.44 7.05 -2.39 -0.02 1.42 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -69.92 330.19 4.46 -65.47 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 1.05 Total: 23.73 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.93 Total: 9.17 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -3.89 Total: -94.68 kcal Atomic # 8 Polarization: -45.92 SS G_CDS: -1.65 Total: -47.57 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -69.92 4.46 -65.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408387079.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.282 kcal (2) G-P(sol) polarization free energy of solvation -69.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds