Wall clock time and date at job start Fri Apr 10 2020 17:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 C 1.35447 * 126.06597 * 269.69159 * 5 4 2 7 7 N 1.35539 * 108.87004 * 179.86485 * 6 5 4 8 8 H 0.97002 * 125.67644 * 180.13419 * 7 6 5 9 9 C 1.37654 * 108.64421 * 0.40197 * 7 6 5 10 10 C 1.46674 * 126.23224 * 179.75731 * 9 7 6 11 11 O 1.21701 * 119.99637 * 179.97438 * 10 9 7 12 12 N 1.34772 * 120.00113 * 359.97438 * 10 9 7 13 13 C 1.46505 * 119.99861 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47056 * 180.02562 * 13 12 10 15 15 O 1.21297 * 120.00242 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99957 * 180.02562 * 14 13 12 17 17 C 1.37102 * 120.00196 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99813 * 359.97438 * 17 16 14 19 19 C 1.38944 * 119.99881 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00726 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99685 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47125 * 60.00125 * 21 19 17 23 23 H 1.48500 * 109.47183 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47148 * 300.00266 * 21 19 17 25 25 C 1.37875 * 107.53152 * 359.75295 * 9 7 6 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 34 34 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 35 35 H 1.08003 * 125.56732 * 359.97438 * 6 5 4 36 36 H 0.96994 * 120.00245 * 0.02562 * 12 10 9 37 37 H 1.08998 * 109.47274 * 300.00217 * 13 12 10 38 38 H 1.08998 * 109.46592 * 60.00315 * 13 12 10 39 39 H 0.97000 * 120.00016 * 359.97438 * 16 14 13 40 40 H 0.96993 * 120.00810 * 180.02562 * 20 19 17 41 41 H 1.07994 * 126.45991 * 180.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6414 -2.1733 -1.1891 6 6 2.3686 -3.1779 -0.6446 7 7 1.6814 -4.3385 -0.7777 8 1 1.9774 -5.2097 -0.4704 9 6 0.4962 -4.0763 -1.4268 10 6 -0.5373 -5.0572 -1.7745 11 8 -1.5471 -4.6985 -2.3514 12 7 -0.3688 -6.3556 -1.4550 13 6 -1.4015 -7.3353 -1.8017 14 6 -0.9725 -8.7031 -1.3370 15 8 0.0914 -8.8458 -0.7721 16 7 -1.7706 -9.7681 -1.5499 17 6 -1.3801 -11.0126 -1.1276 18 1 -0.4328 -11.1396 -0.6247 19 6 -2.2031 -12.1105 -1.3467 20 7 -3.3555 -11.9561 -1.9590 21 14 -1.6714 -13.8061 -0.7706 22 1 -1.4782 -13.7906 0.7017 23 1 -2.7178 -14.7992 -1.1226 24 1 -0.3952 -14.1764 -1.4334 25 6 0.4577 -2.7235 -1.6906 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6054 -0.2616 -2.1371 34 1 3.1263 -0.6443 -1.2952 35 1 3.3371 -3.0712 -0.1787 36 1 0.4358 -6.6414 -0.9948 37 1 -2.3381 -7.0637 -1.3149 38 1 -1.5435 -7.3462 -2.8824 39 1 -2.6212 -9.6541 -2.0020 40 1 -3.9302 -12.7224 -2.1116 41 1 -0.3370 -2.1895 -2.1901 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412348695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:02 Heat of formation + Delta-G solvation = -54.164007 kcal Electronic energy + Delta-G solvation = -22349.356113 eV Core-core repulsion = 18842.999603 eV Total energy + Delta-G solvation = -3506.356510 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.41223 -39.20911 -38.03770 -36.53031 -34.54636 -33.76595 -31.56834 -31.40513 -29.85252 -27.90131 -27.25766 -26.17249 -24.60488 -22.50233 -20.70729 -20.07146 -19.74862 -19.24233 -18.58195 -18.00276 -16.21932 -15.63137 -15.46905 -15.29517 -15.04314 -14.66244 -14.48890 -14.20720 -14.01867 -13.87962 -13.45943 -13.34309 -13.15224 -12.81923 -12.38630 -12.27375 -12.10068 -11.98189 -11.68557 -11.66059 -11.14732 -11.11733 -10.95379 -10.77751 -10.54805 -10.36715 -9.99758 -9.68179 -8.96799 -8.82369 -8.71040 -8.18950 -8.15420 -6.56232 -3.98780 1.50490 2.61701 3.05685 3.09760 3.18066 3.20283 3.31142 3.49197 3.68391 4.06871 4.70910 4.74409 4.80024 4.84062 4.97147 4.99673 5.12091 5.20464 5.28869 5.45212 5.52857 5.57891 5.71794 5.76647 5.79040 5.84605 5.89963 5.95120 6.00158 6.02910 6.12450 6.20900 6.26006 6.53765 6.70652 6.88597 7.30690 7.40852 7.71966 7.85971 8.32053 8.39626 8.98885 9.33165 9.80602 10.60354 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044035 B = 0.002379 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.700424 B =11764.725581 C =12117.911722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.040 4.040 5 C -0.176 4.176 6 C 0.022 3.978 7 N -0.537 5.537 8 H 0.420 0.580 9 C -0.046 4.046 10 C 0.584 3.416 11 O -0.537 6.537 12 N -0.708 5.708 13 C 0.110 3.890 14 C 0.426 3.574 15 O -0.601 6.601 16 N -0.546 5.546 17 C -0.307 4.307 18 H 0.105 0.895 19 C 0.027 3.973 20 N -0.893 5.893 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.103 4.103 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.167 0.833 36 H 0.404 0.596 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.397 0.603 40 H 0.276 0.724 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.378 20.393 2.391 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.078 4.078 5 C -0.182 4.182 6 C -0.114 4.114 7 N -0.133 5.133 8 H 0.257 0.743 9 C -0.160 4.160 10 C 0.372 3.628 11 O -0.415 6.415 12 N -0.362 5.362 13 C -0.018 4.018 14 C 0.212 3.788 15 O -0.489 6.489 16 N -0.180 5.180 17 C -0.437 4.437 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.533 5.533 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.129 4.129 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.185 0.815 36 H 0.242 0.758 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.230 0.770 40 H 0.086 0.914 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.176 20.168 2.330 22.279 hybrid contribution 0.185 -1.481 0.380 1.540 sum 9.362 18.687 2.710 21.076 Atomic orbital electron populations 1.21876 0.95112 1.02484 1.01124 1.21103 0.96256 0.95390 0.98257 1.21862 1.00703 0.96307 1.01654 1.20010 1.00104 0.89827 0.97852 1.19358 0.96436 0.95323 1.07127 1.21798 0.99040 0.84699 1.05912 1.42047 1.15775 1.10140 1.45297 0.74271 1.20442 0.89963 0.95664 1.09895 1.17064 0.85475 0.81167 0.79141 1.90828 1.28629 1.79580 1.42441 1.45585 1.23632 1.06651 1.60286 1.20979 0.91377 0.87910 1.01499 1.19710 0.86875 0.85650 0.86560 1.90478 1.24553 1.85298 1.48524 1.41788 1.19299 1.06426 1.50525 1.19678 1.05496 0.82749 1.35741 0.87721 1.25342 0.95236 1.00425 0.96667 1.69598 1.10264 1.32663 1.40740 0.85858 0.78238 0.80528 0.79257 1.19755 1.20792 1.19760 1.21143 0.98443 0.91056 1.02297 0.93341 0.91834 0.92892 0.91400 0.92904 0.92884 0.92739 0.91290 0.91629 0.81526 0.75843 0.89570 0.89556 0.76954 0.91442 0.83716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 8.92 37.16 0.33 -0.96 16 2 C -0.09 -0.70 2.91 -90.62 -0.26 -0.97 16 3 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 4 C -0.04 -0.32 5.18 -27.88 -0.14 -0.47 16 5 C -0.18 -1.80 4.78 -105.02 -0.50 -2.31 16 6 C 0.02 0.20 11.80 -16.91 -0.20 0.00 16 7 N -0.54 -5.74 5.99 -9.39 -0.06 -5.80 16 8 H 0.42 3.78 8.19 -40.82 -0.33 3.45 16 9 C -0.05 -0.64 7.06 -81.98 -0.58 -1.22 16 10 C 0.58 9.74 7.79 -12.86 -0.10 9.64 16 11 O -0.54 -10.47 16.88 5.19 0.09 -10.39 16 12 N -0.71 -11.85 5.52 -62.80 -0.35 -12.19 16 13 C 0.11 2.02 6.15 -5.19 -0.03 1.99 16 14 C 0.43 9.65 7.85 -10.99 -0.09 9.57 16 15 O -0.60 -15.06 15.24 5.54 0.08 -14.98 16 16 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 17 C -0.31 -8.26 9.68 -14.93 -0.14 -8.41 16 18 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 19 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.62 13.05 55.50 0.72 -22.90 16 21 Si 0.93 20.33 29.55 -169.99 -5.02 15.30 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C -0.10 -1.31 9.26 -39.12 -0.36 -1.67 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.65 6.41 -51.93 -0.33 0.32 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.17 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.40 6.44 6.57 -40.82 -0.27 6.17 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 39 H 0.40 9.36 7.90 -40.82 -0.32 9.04 16 40 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -31.28 350.99 -6.98 -38.26 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -5.84 Total: 15.67 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.84 Total: 5.20 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.26 Total: -54.36 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: 0.17 Total: -25.36 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.28 -6.98 -38.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412348695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.905 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds