Wall clock time and date at job start Fri Apr 10 2020 17:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47179 * 239.99974 * 3 2 1 5 5 H 1.48495 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46848 * 120.00275 * 3 2 1 7 7 C 1.37879 * 120.00572 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00423 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99628 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.36327 * 125.86889 * 85.02863 * 10 9 7 12 12 C 1.35124 * 108.90125 * 179.97438 * 11 10 9 13 13 C 1.40974 * 108.24009 * 359.97438 * 12 11 10 14 14 N 1.33308 * 126.35992 * 179.97438 * 13 12 11 15 15 C 1.32904 * 119.99479 * 0.02562 * 14 13 12 16 16 O 1.21591 * 120.00587 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99627 * 179.97438 * 15 14 13 18 18 H 1.09005 * 109.46793 * 60.00191 * 17 15 14 19 19 C 1.52998 * 109.47288 * 299.99811 * 17 15 14 20 20 C 1.53001 * 109.47151 * 179.97438 * 19 17 15 21 21 C 1.53004 * 109.46844 * 60.00361 * 20 19 17 22 22 C 1.53004 * 109.47191 * 299.99976 * 21 20 19 23 23 H 1.08997 * 109.46911 * 300.00055 * 22 21 20 24 24 O 1.42902 * 109.47222 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.47033 * 59.99919 * 22 21 20 26 26 N 1.37284 * 107.28696 * 0.02562 * 13 12 11 27 27 H 0.97002 * 126.35505 * 179.97438 * 26 13 12 28 28 H 0.97001 * 120.00260 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47290 * 60.00018 * 9 7 2 30 30 H 1.08998 * 109.46770 * 299.99891 * 9 7 2 31 31 H 1.08011 * 125.54812 * 0.25129 * 11 10 9 32 32 H 1.08002 * 125.87894 * 179.97438 * 12 11 10 33 33 H 1.08997 * 109.47206 * 299.99940 * 19 17 15 34 34 H 1.09002 * 109.46814 * 59.99962 * 19 17 15 35 35 H 1.08994 * 109.46890 * 180.02562 * 20 19 17 36 36 H 1.08997 * 109.47341 * 300.00255 * 20 19 17 37 37 H 1.08998 * 109.46861 * 59.99454 * 21 20 19 38 38 H 1.08995 * 109.47313 * 179.97438 * 21 20 19 39 39 H 0.96698 * 113.99415 * 59.99487 * 24 22 21 40 40 H 1.09004 * 109.47065 * 180.02562 * 25 22 21 41 41 H 1.08998 * 109.47657 * 60.00131 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7951 -4.1575 1.1000 12 6 3.6086 -5.1624 0.7072 13 6 3.5354 -5.2662 -0.6968 14 7 4.1936 -6.1386 -1.4601 15 6 5.0139 -7.0231 -0.9023 16 8 5.1644 -7.0362 0.3042 17 6 5.7576 -8.0097 -1.7652 18 1 6.3910 -7.4709 -2.4699 19 6 4.7547 -8.8706 -2.5360 20 6 5.5098 -9.8718 -3.4125 21 6 6.3789 -10.7690 -2.5291 22 6 7.3818 -9.9082 -1.7582 23 1 8.0150 -9.3691 -2.4629 24 8 8.1940 -10.7462 -0.9335 25 6 6.6267 -8.9069 -0.8818 26 7 2.6612 -4.3013 -1.1321 27 1 2.4077 -4.1280 -2.0523 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.6359 -3.8408 2.1203 32 1 4.2112 -5.7797 1.3570 33 1 4.1213 -9.4094 -1.8313 34 1 4.1358 -8.2314 -3.1657 35 1 4.7953 -10.4847 -3.9619 36 1 6.1429 -9.3327 -4.1172 37 1 5.7457 -11.3081 -1.8244 38 1 6.9165 -11.4826 -3.1534 39 1 8.7024 -11.4067 -1.4239 40 1 7.3412 -8.2934 -0.3329 41 1 5.9935 -9.4460 -0.1771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439281268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:12 Heat of formation + Delta-G solvation = -7.095184 kcal Electronic energy + Delta-G solvation = -22944.010377 eV Core-core repulsion = 19439.694924 eV Total energy + Delta-G solvation = -3504.315453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.90141 -39.50695 -37.86977 -35.44396 -34.26689 -32.97500 -31.15447 -31.07708 -30.55993 -29.38604 -26.82518 -24.19246 -22.94354 -22.27666 -21.51282 -21.24981 -19.96775 -18.93968 -17.26367 -17.03383 -16.74980 -15.78474 -15.49123 -15.07549 -14.91800 -14.63713 -14.42923 -14.22027 -14.07364 -13.59918 -13.11686 -12.96464 -12.81171 -12.59702 -12.40805 -12.13003 -12.00014 -11.55762 -11.38905 -11.08993 -11.07036 -10.76185 -10.56397 -10.49909 -10.45238 -10.37668 -9.83302 -9.61780 -9.20802 -9.06611 -8.94901 -8.32628 -7.00798 -6.53494 -4.69588 1.62181 2.02788 2.96658 3.05406 3.11150 3.14505 3.97817 4.04388 4.28026 4.30015 4.64693 4.71959 4.77992 4.94229 5.14413 5.20192 5.22524 5.30134 5.38765 5.49691 5.55795 5.64750 5.80043 5.90314 5.95670 6.02525 6.04569 6.20181 6.26639 6.42719 6.46040 6.50755 6.50848 6.59306 6.72953 7.33640 7.43361 7.47639 7.56551 7.59259 7.93131 8.31596 8.39686 9.01290 9.37690 10.49136 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036392 B = 0.002678 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.218767 B =10452.573304 C =10582.965948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.071 3.929 3 Si 0.910 3.090 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.560 4.560 8 H 0.069 0.931 9 C 0.254 3.746 10 N -0.340 5.340 11 C 0.163 3.837 12 C -0.333 4.333 13 C 0.468 3.532 14 N -0.700 5.700 15 C 0.498 3.502 16 O -0.585 6.585 17 C -0.075 4.075 18 H 0.088 0.912 19 C -0.103 4.103 20 C -0.116 4.116 21 C -0.151 4.151 22 C 0.104 3.896 23 H 0.053 0.947 24 O -0.568 6.568 25 C -0.093 4.093 26 N -0.466 5.466 27 H 0.445 0.555 28 H 0.273 0.727 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.189 0.811 32 H 0.184 0.816 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.373 0.627 40 H 0.072 0.928 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.040 -14.140 -4.655 16.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.737 3.263 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.598 4.598 8 H 0.088 0.912 9 C 0.137 3.863 10 N -0.125 5.125 11 C 0.017 3.983 12 C -0.365 4.365 13 C 0.219 3.781 14 N -0.464 5.464 15 C 0.283 3.717 16 O -0.468 6.468 17 C -0.096 4.096 18 H 0.106 0.894 19 C -0.141 4.141 20 C -0.154 4.154 21 C -0.189 4.189 22 C 0.046 3.954 23 H 0.071 0.929 24 O -0.373 6.373 25 C -0.131 4.131 26 N -0.188 5.188 27 H 0.292 0.708 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.206 0.794 32 H 0.201 0.799 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.219 0.781 40 H 0.090 0.910 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.355 -13.418 -4.525 15.521 hybrid contribution 0.545 0.789 -0.361 1.025 sum 6.900 -12.629 -4.886 15.198 Atomic orbital electron populations 1.69881 1.06147 1.28479 1.47766 1.24953 0.95021 0.99754 0.93727 0.86334 0.79438 0.81321 0.79230 1.19824 1.20765 1.19640 1.21362 0.94048 0.89498 1.54912 0.91245 1.20090 0.85609 0.79777 1.00789 1.48071 1.39265 1.28629 0.96484 1.22900 0.91236 0.92016 0.92192 1.22483 1.11726 1.07040 0.95273 1.19264 0.84034 0.84807 0.89977 1.68729 1.24588 1.15891 1.37230 1.20598 0.80988 0.83286 0.86790 1.90533 1.65814 1.72932 1.17477 1.20759 0.96686 0.95038 0.97148 0.89404 1.21420 0.97334 0.96891 0.98434 1.21504 0.98628 0.97479 0.97747 1.22287 0.98916 0.98535 0.99174 1.21860 0.90847 0.90873 0.91838 0.92896 1.86553 1.62114 1.50686 1.37927 1.21260 0.98378 0.96055 0.97400 1.44593 1.41468 1.29082 1.03625 0.70769 0.91728 0.92993 0.91302 0.79442 0.79923 0.92159 0.90253 0.91700 0.91799 0.91171 0.92149 0.78082 0.90971 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.30 13.29 55.43 0.74 -21.56 16 2 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 19.12 29.54 -169.99 -5.02 14.10 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.56 -13.17 9.39 -34.44 -0.32 -13.50 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.25 5.20 6.19 -5.19 -0.03 5.17 16 10 N -0.34 -6.20 3.63 -62.23 -0.23 -6.43 16 11 C 0.16 2.72 11.46 -16.66 -0.19 2.53 16 12 C -0.33 -6.17 9.51 -39.65 -0.38 -6.54 16 13 C 0.47 8.97 8.07 -155.19 -1.25 7.72 16 14 N -0.70 -13.49 10.31 -11.59 -0.12 -13.61 16 15 C 0.50 9.48 7.04 -11.81 -0.08 9.40 16 16 O -0.59 -12.47 12.89 5.29 0.07 -12.41 16 17 C -0.07 -1.11 2.60 -91.77 -0.24 -1.35 16 18 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.10 -1.31 5.11 -26.73 -0.14 -1.45 16 20 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 21 C -0.15 -1.45 5.55 -26.73 -0.15 -1.59 16 22 C 0.10 1.17 3.47 -26.73 -0.09 1.08 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 O -0.57 -6.45 13.32 -35.23 -0.47 -6.92 16 25 C -0.09 -1.34 4.14 -26.73 -0.11 -1.45 16 26 N -0.47 -8.19 7.37 31.32 0.23 -7.96 16 27 H 0.45 6.87 8.96 -182.55 -1.64 5.23 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 31 H 0.19 2.46 8.06 -52.48 -0.42 2.04 16 32 H 0.18 3.57 5.77 -52.49 -0.30 3.26 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.37 2.41 9.08 45.56 0.41 2.83 16 40 H 0.07 1.15 8.10 -51.93 -0.42 0.73 16 41 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -29.38 341.09 -9.46 -38.84 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -6.56 Total: 10.47 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -3.24 Total: 0.34 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 0.62 Total: -49.56 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.40 Total: -19.33 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.10 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.38 -9.46 -38.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439281268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.745 kcal (2) G-P(sol) polarization free energy of solvation -29.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds