Wall clock time and date at job start Fri Apr 10 2020 17:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86808 * 119.99976 * 2 1 4 4 H 1.48497 * 109.47179 * 239.99974 * 3 2 1 5 5 H 1.48495 * 109.46977 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46848 * 120.00275 * 3 2 1 7 7 C 1.37879 * 120.00572 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00423 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99628 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46908 * 180.02562 * 9 7 2 11 11 C 1.36327 * 125.86889 * 85.02863 * 10 9 7 12 12 C 1.35124 * 108.90125 * 179.97438 * 11 10 9 13 13 C 1.40974 * 108.24009 * 359.97438 * 12 11 10 14 14 N 1.33308 * 126.35992 * 179.97438 * 13 12 11 15 15 C 1.32904 * 119.99479 * 0.02562 * 14 13 12 16 16 O 1.21591 * 120.00587 * 359.97438 * 15 14 13 17 17 C 1.50705 * 119.99627 * 179.97438 * 15 14 13 18 18 H 1.09005 * 109.46793 * 60.00191 * 17 15 14 19 19 C 1.52998 * 109.47288 * 299.99811 * 17 15 14 20 20 C 1.53001 * 109.47151 * 179.97438 * 19 17 15 21 21 C 1.53004 * 109.46844 * 60.00361 * 20 19 17 22 22 C 1.53004 * 109.47191 * 299.99976 * 21 20 19 23 23 H 1.08997 * 109.46911 * 300.00055 * 22 21 20 24 24 O 1.42902 * 109.47222 * 180.02562 * 22 21 20 25 25 C 1.52997 * 109.47033 * 59.99919 * 22 21 20 26 26 N 1.37284 * 107.28696 * 0.02562 * 13 12 11 27 27 H 0.97002 * 126.35505 * 179.97438 * 26 13 12 28 28 H 0.97001 * 120.00260 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47290 * 60.00018 * 9 7 2 30 30 H 1.08998 * 109.46770 * 299.99891 * 9 7 2 31 31 H 1.08011 * 125.54812 * 0.25129 * 11 10 9 32 32 H 1.08002 * 125.87894 * 179.97438 * 12 11 10 33 33 H 1.08997 * 109.47206 * 299.99940 * 19 17 15 34 34 H 1.09002 * 109.46814 * 59.99962 * 19 17 15 35 35 H 1.08994 * 109.46890 * 180.02562 * 20 19 17 36 36 H 1.08997 * 109.47341 * 300.00255 * 20 19 17 37 37 H 1.08998 * 109.46861 * 59.99454 * 21 20 19 38 38 H 1.08995 * 109.47313 * 179.97438 * 21 20 19 39 39 H 0.96698 * 113.99415 * 59.99487 * 24 22 21 40 40 H 1.09004 * 109.47065 * 180.02562 * 25 22 21 41 41 H 1.08998 * 109.47657 * 60.00131 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.7951 -4.1575 1.1000 12 6 3.6086 -5.1624 0.7072 13 6 3.5354 -5.2662 -0.6968 14 7 4.1936 -6.1386 -1.4601 15 6 5.0139 -7.0231 -0.9023 16 8 5.1644 -7.0362 0.3042 17 6 5.7576 -8.0097 -1.7652 18 1 6.3910 -7.4709 -2.4699 19 6 4.7547 -8.8706 -2.5360 20 6 5.5098 -9.8718 -3.4125 21 6 6.3789 -10.7690 -2.5291 22 6 7.3818 -9.9082 -1.7582 23 1 8.0150 -9.3691 -2.4629 24 8 8.1940 -10.7462 -0.9335 25 6 6.6267 -8.9069 -0.8818 26 7 2.6612 -4.3013 -1.1321 27 1 2.4077 -4.1280 -2.0523 28 1 -0.4850 0.8400 0.0004 29 1 0.6241 -2.5568 -0.8902 30 1 0.6248 -2.5571 0.8897 31 1 2.6359 -3.8408 2.1203 32 1 4.2112 -5.7797 1.3570 33 1 4.1213 -9.4094 -1.8313 34 1 4.1358 -8.2314 -3.1657 35 1 4.7953 -10.4847 -3.9619 36 1 6.1429 -9.3327 -4.1172 37 1 5.7457 -11.3081 -1.8244 38 1 6.9165 -11.4826 -3.1534 39 1 8.7024 -11.4067 -1.4239 40 1 7.3412 -8.2934 -0.3329 41 1 5.9935 -9.4460 -0.1771 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439281268.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:11 Heat of formation + Delta-G solvation = -27.405603 kcal Electronic energy + Delta-G solvation = -22944.891103 eV Core-core repulsion = 19439.694924 eV Total energy + Delta-G solvation = -3505.196179 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.37020 -40.71533 -39.05793 -36.42131 -35.91481 -34.62761 -32.57185 -32.47635 -31.80338 -30.40586 -28.47093 -25.58790 -24.42880 -23.24595 -22.86245 -22.61454 -21.01102 -20.25885 -18.91206 -18.39343 -18.01251 -17.15805 -16.81320 -16.55591 -16.36498 -15.96703 -15.68242 -15.37416 -15.21125 -14.72917 -14.48288 -14.36622 -14.21786 -13.97828 -13.70148 -13.39418 -13.24920 -13.07142 -12.74216 -12.51704 -12.32452 -12.13200 -12.05992 -11.68307 -11.50106 -11.37587 -11.23289 -10.80352 -10.76140 -10.54570 -10.53357 -9.85230 -8.62122 -8.29033 -6.57742 0.15830 0.56101 1.39126 1.41724 1.48211 1.52181 2.29578 2.71347 2.85998 2.93656 3.17693 3.59042 3.80093 3.87780 4.02490 4.13278 4.24156 4.30725 4.34519 4.44135 4.46225 4.51483 4.59505 4.71294 4.83167 4.89699 5.01952 5.07633 5.16640 5.19546 5.23487 5.24703 5.30361 5.42026 5.49596 5.51868 5.68305 5.95912 6.09558 6.41136 6.60909 6.85452 6.97263 7.16131 7.87820 8.64780 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036392 B = 0.002678 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.218767 B =10452.573304 C =10582.965948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.031 3.969 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.568 4.568 8 H 0.059 0.941 9 C 0.266 3.734 10 N -0.344 5.344 11 C 0.179 3.821 12 C -0.347 4.347 13 C 0.452 3.548 14 N -0.706 5.706 15 C 0.482 3.518 16 O -0.617 6.617 17 C -0.069 4.069 18 H 0.100 0.900 19 C -0.098 4.098 20 C -0.109 4.109 21 C -0.145 4.145 22 C 0.109 3.891 23 H 0.070 0.930 24 O -0.588 6.588 25 C -0.089 4.089 26 N -0.460 5.460 27 H 0.453 0.547 28 H 0.274 0.726 29 H 0.045 0.955 30 H 0.073 0.927 31 H 0.225 0.775 32 H 0.173 0.827 33 H 0.045 0.955 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.395 0.605 40 H 0.048 0.952 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.746 -14.658 -5.728 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.788 3.212 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.606 4.606 8 H 0.078 0.922 9 C 0.149 3.851 10 N -0.128 5.128 11 C 0.033 3.967 12 C -0.379 4.379 13 C 0.203 3.797 14 N -0.470 5.470 15 C 0.269 3.731 16 O -0.501 6.501 17 C -0.091 4.091 18 H 0.118 0.882 19 C -0.136 4.136 20 C -0.147 4.147 21 C -0.183 4.183 22 C 0.051 3.949 23 H 0.088 0.912 24 O -0.397 6.397 25 C -0.127 4.127 26 N -0.183 5.183 27 H 0.302 0.698 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.241 0.759 32 H 0.190 0.810 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.245 0.755 40 H 0.067 0.933 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.069 -13.955 -5.625 16.624 hybrid contribution 0.334 0.935 0.014 0.993 sum 7.403 -13.020 -5.611 15.994 Atomic orbital electron populations 1.69945 1.07110 1.29129 1.48786 1.25587 0.95631 1.02338 0.93583 0.85516 0.78341 0.78381 0.78975 1.20068 1.20432 1.19353 1.21566 0.93753 0.90881 1.54394 0.92228 1.19790 0.85427 0.79286 1.00555 1.47946 1.39302 1.28471 0.97106 1.23427 0.89459 0.90591 0.93195 1.22394 1.12558 1.07861 0.95086 1.19512 0.84399 0.85191 0.90605 1.68826 1.24768 1.16065 1.37337 1.21446 0.80941 0.83695 0.87023 1.90511 1.66878 1.73805 1.18913 1.20769 0.96942 0.94544 0.96799 0.88231 1.21382 0.96875 0.97096 0.98211 1.21485 0.98922 0.96930 0.97340 1.22241 0.98422 0.98556 0.99052 1.21765 0.91309 0.90708 0.91140 0.91209 1.86497 1.62572 1.51496 1.39091 1.21181 0.97718 0.96391 0.97459 1.44567 1.41113 1.28659 1.03937 0.69808 0.91639 0.93651 0.90928 0.75855 0.81036 0.93588 0.90879 0.89906 0.90332 0.92348 0.89001 0.75474 0.93304 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.29 13.29 21.45 0.28 -45.00 16 2 C 0.03 1.48 5.46 84.66 0.46 1.94 16 3 Si 0.96 38.45 29.54 68.60 2.03 40.48 16 4 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 7 C -0.57 -26.21 9.39 25.60 0.24 -25.97 16 8 H 0.06 2.84 7.81 -2.91 -0.02 2.81 16 9 C 0.27 10.70 6.19 85.63 0.53 11.23 16 10 N -0.34 -12.26 3.63 -350.80 -1.27 -13.53 16 11 C 0.18 5.78 11.46 83.28 0.95 6.74 16 12 C -0.35 -12.92 9.51 22.22 0.21 -12.71 16 13 C 0.45 17.44 8.07 133.82 1.08 18.52 16 14 N -0.71 -27.55 10.31 -309.88 -3.19 -30.74 16 15 C 0.48 18.83 7.04 87.95 0.62 19.45 16 16 O -0.62 -27.37 12.89 -4.00 -0.05 -27.42 16 17 C -0.07 -2.06 2.60 -11.54 -0.03 -2.09 16 18 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 19 C -0.10 -2.41 5.11 30.59 0.16 -2.26 16 20 C -0.11 -1.84 5.92 30.60 0.18 -1.66 16 21 C -0.15 -2.38 5.55 30.60 0.17 -2.21 16 22 C 0.11 2.27 3.47 30.59 0.11 2.38 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 O -0.59 -12.43 13.32 -148.98 -1.98 -14.42 16 25 C -0.09 -2.62 4.14 30.59 0.13 -2.49 16 26 N -0.46 -16.03 7.37 -54.81 -0.40 -16.43 16 27 H 0.45 13.85 8.96 -213.28 -1.91 11.94 16 28 H 0.27 13.01 8.31 -92.71 -0.77 12.24 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 31 H 0.23 5.37 8.06 -2.90 -0.02 5.35 16 32 H 0.17 6.89 5.77 -2.91 -0.02 6.88 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.40 4.11 9.08 -74.06 -0.67 3.44 16 40 H 0.05 1.61 8.10 -2.38 -0.02 1.59 16 41 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 Total: -1.00 -63.28 341.09 -1.32 -64.60 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -1.53 Total: 31.59 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 4.81 Total: 10.88 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -4.59 Total: -105.70 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -2.04 Total: -41.84 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -63.28 -1.32 -64.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439281268.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.194 kcal (2) G-P(sol) polarization free energy of solvation -63.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds