Wall clock time and date at job start Fri Apr 10 2020 17:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.36330 * 125.86591 * 85.02184 * 10 9 7 12 12 C 1.35118 * 108.90231 * 179.97438 * 11 10 9 13 13 C 1.40988 * 108.23969 * 359.97438 * 12 11 10 14 14 N 1.33301 * 126.36056 * 180.02562 * 13 12 11 15 15 C 1.32908 * 119.99776 * 359.97255 * 14 13 12 16 16 O 1.21592 * 120.00060 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99766 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.47174 * 299.99625 * 17 15 14 19 19 C 1.52997 * 109.47370 * 59.99933 * 17 15 14 20 20 C 1.53005 * 109.47014 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.47079 * 300.00001 * 20 19 17 22 22 C 1.52997 * 109.47199 * 60.00112 * 21 20 19 23 23 H 1.09001 * 109.47168 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47278 * 59.99884 * 22 21 20 25 25 C 1.52998 * 109.46903 * 180.02562 * 17 15 14 26 26 N 1.37290 * 107.28200 * 359.75538 * 13 12 11 27 27 H 0.97001 * 126.34483 * 180.25769 * 26 13 12 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 30 30 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 31 31 H 1.08003 * 125.54785 * 359.95425 * 11 10 9 32 32 H 1.08001 * 125.88443 * 179.97438 * 12 11 10 33 33 H 1.08996 * 109.46919 * 299.99966 * 19 17 15 34 34 H 1.09000 * 109.47175 * 60.00270 * 19 17 15 35 35 H 1.09000 * 109.46932 * 60.00117 * 20 19 17 36 36 H 1.08998 * 109.46687 * 179.97438 * 20 19 17 37 37 H 1.08997 * 109.46815 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46863 * 300.00100 * 21 20 19 39 39 H 0.96699 * 114.00180 * 60.00058 * 24 22 21 40 40 H 1.09000 * 109.47333 * 299.99541 * 25 17 15 41 41 H 1.08998 * 109.47480 * 60.00011 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0013 11 6 4.1761 -3.3591 -1.1028 12 6 4.6396 -4.5665 -0.7112 13 6 4.7657 -4.5566 0.6930 14 7 5.1929 -5.5633 1.4552 15 6 5.5490 -6.7153 0.8962 16 8 5.4855 -6.8508 -0.3105 17 6 6.0314 -7.8536 1.7580 18 1 6.9195 -7.5421 2.3077 19 6 4.9316 -8.2467 2.7463 20 6 5.4217 -9.4020 3.6217 21 6 5.7650 -10.6021 2.7370 22 6 6.8648 -10.2090 1.7486 23 1 7.1091 -11.0639 1.1180 24 8 8.0290 -9.7999 2.4693 25 6 6.3749 -9.0533 0.8728 26 7 4.3727 -3.3155 1.1290 27 1 4.3543 -3.0086 2.0490 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 -0.8895 30 1 3.8746 -0.6808 0.8905 31 1 3.9774 -3.0633 -2.1223 32 1 4.8731 -5.3963 -1.3618 33 1 4.6873 -7.3918 3.3769 34 1 4.0435 -8.5583 2.1966 35 1 6.3096 -9.0899 4.1714 36 1 4.6383 -9.6816 4.3261 37 1 6.1137 -11.4252 3.3606 38 1 4.8770 -10.9140 2.1872 39 1 8.3951 -10.4842 3.0462 40 1 5.4870 -9.3651 0.3227 41 1 7.1586 -8.7731 0.1690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439281272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:14 Heat of formation + Delta-G solvation = 1.216934 kcal Electronic energy + Delta-G solvation = -23124.189993 eV Core-core repulsion = 19620.234981 eV Total energy + Delta-G solvation = -3503.955012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.94256 -39.55958 -37.91532 -34.95737 -34.25085 -32.92844 -31.21572 -31.14873 -30.71002 -29.67572 -27.20658 -24.08849 -22.61931 -22.36877 -21.49002 -21.25778 -19.84681 -18.82775 -17.45794 -16.96462 -16.79304 -15.89914 -15.67407 -15.05494 -14.96612 -14.67663 -14.39071 -14.15711 -13.81539 -13.69899 -13.06559 -12.97124 -12.82826 -12.58525 -12.42717 -12.24533 -12.22772 -11.61425 -11.50865 -11.07746 -11.04002 -10.81573 -10.74420 -10.55267 -10.17230 -10.07858 -9.68490 -9.67675 -9.17438 -9.09974 -9.07012 -8.31909 -6.97041 -6.54570 -4.63477 1.58561 1.95226 2.94021 2.95500 2.98678 3.05471 3.94718 4.12192 4.22951 4.34058 4.63552 4.73800 4.76409 4.85982 5.09261 5.16277 5.34585 5.37374 5.47926 5.57155 5.61406 5.66395 5.79808 5.86946 5.93549 6.03346 6.04618 6.11809 6.24210 6.25935 6.34457 6.44445 6.59699 6.61878 6.68576 6.89670 7.35445 7.52931 7.60085 7.81977 8.01520 8.31918 8.48890 8.97516 9.38619 10.56985 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037870 B = 0.002809 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.187376 B = 9965.247588 C =10186.470139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.084 3.916 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.228 3.772 10 N -0.341 5.341 11 C 0.165 3.835 12 C -0.330 4.330 13 C 0.472 3.528 14 N -0.697 5.697 15 C 0.497 3.503 16 O -0.588 6.588 17 C -0.072 4.072 18 H 0.095 0.905 19 C -0.101 4.101 20 C -0.114 4.114 21 C -0.152 4.152 22 C 0.105 3.895 23 H 0.052 0.948 24 O -0.562 6.562 25 C -0.093 4.093 26 N -0.466 5.466 27 H 0.446 0.554 28 H 0.273 0.727 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.190 0.810 32 H 0.185 0.815 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.371 0.629 40 H 0.078 0.922 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.289 -12.798 3.692 17.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.196 1.196 5 H -0.188 1.188 6 H -0.202 1.202 7 C -0.604 4.604 8 H 0.104 0.896 9 C 0.110 3.890 10 N -0.126 5.126 11 C 0.020 3.980 12 C -0.362 4.362 13 C 0.222 3.778 14 N -0.461 5.461 15 C 0.283 3.717 16 O -0.470 6.470 17 C -0.094 4.094 18 H 0.113 0.887 19 C -0.139 4.139 20 C -0.151 4.151 21 C -0.190 4.190 22 C 0.046 3.954 23 H 0.070 0.930 24 O -0.367 6.367 25 C -0.131 4.131 26 N -0.189 5.189 27 H 0.293 0.707 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.207 0.793 32 H 0.202 0.798 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.217 0.783 40 H 0.096 0.904 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.913 -11.814 3.700 16.503 hybrid contribution 0.123 0.505 0.164 0.545 sum 11.036 -11.309 3.864 16.267 Atomic orbital electron populations 1.69857 1.06267 1.27923 1.47029 1.24829 0.94872 0.98991 0.93591 0.86888 0.80274 0.83589 0.79211 1.19555 1.18774 1.20179 1.21242 0.87783 0.95946 1.55388 0.89639 1.20369 0.96891 0.72007 0.99713 1.47494 1.56301 1.11983 0.96799 1.22883 0.92552 0.90518 0.92008 1.22509 1.18208 1.00178 0.95302 1.19296 0.84812 0.83738 0.89976 1.68779 1.38070 1.01978 1.37261 1.20823 0.77005 0.86979 0.86852 1.90510 1.54055 1.84885 1.17597 1.20737 0.99620 0.92787 0.96214 0.88735 1.21381 0.97066 0.98216 0.97216 1.21459 1.01086 0.94931 0.97633 1.22264 0.99779 0.98260 0.98720 1.21858 0.84744 0.96648 0.92140 0.93010 1.86578 1.44371 1.43551 1.62158 1.21382 1.01516 0.93494 0.96703 1.44531 1.61371 1.09454 1.03504 0.70724 0.91664 0.91708 0.93729 0.79338 0.79803 0.90539 0.92533 0.91369 0.92287 0.92168 0.91117 0.78319 0.90371 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.87 13.96 55.43 0.77 -23.10 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 17.81 27.47 -169.99 -4.67 13.14 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.26 -4.92 6.54 56.52 0.37 -4.55 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.57 -13.66 9.94 -34.44 -0.34 -14.00 16 8 H 0.09 2.37 8.06 -52.49 -0.42 1.95 16 9 C 0.23 4.35 5.26 -5.19 -0.03 4.33 16 10 N -0.34 -6.12 3.63 -62.23 -0.23 -6.35 16 11 C 0.17 2.73 11.46 -16.66 -0.19 2.54 16 12 C -0.33 -6.09 9.51 -39.65 -0.38 -6.47 16 13 C 0.47 9.10 8.07 -155.18 -1.25 7.84 16 14 N -0.70 -13.72 10.31 -11.59 -0.12 -13.84 16 15 C 0.50 9.64 7.04 -11.81 -0.08 9.56 16 16 O -0.59 -12.47 12.89 5.28 0.07 -12.40 16 17 C -0.07 -1.13 2.45 -91.77 -0.22 -1.36 16 18 H 0.09 1.53 7.68 -51.93 -0.40 1.13 16 19 C -0.10 -1.39 5.11 -26.73 -0.14 -1.52 16 20 C -0.11 -1.22 5.78 -26.73 -0.15 -1.37 16 21 C -0.15 -1.43 5.64 -26.73 -0.15 -1.58 16 22 C 0.10 1.11 3.77 -26.70 -0.10 1.01 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 O -0.56 -6.03 11.97 -35.23 -0.42 -6.46 16 25 C -0.09 -1.29 4.24 -26.70 -0.11 -1.41 16 26 N -0.47 -8.17 7.37 31.33 0.23 -7.94 16 27 H 0.45 6.80 8.96 -182.55 -1.64 5.16 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.07 1.15 7.20 -51.93 -0.37 0.78 16 30 H 0.04 0.81 7.57 -51.93 -0.39 0.41 16 31 H 0.19 2.41 8.06 -52.48 -0.42 1.99 16 32 H 0.19 3.56 5.77 -52.49 -0.30 3.26 16 33 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.37 2.31 9.08 45.56 0.41 2.72 16 40 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 41 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 LS Contribution 335.42 15.07 5.05 5.05 Total: -1.00 -31.01 335.42 -9.04 -40.05 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -6.48 Total: 12.27 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -3.25 Total: -0.43 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.66 Total: -51.22 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.35 Total: -18.86 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -4.67 Total: 13.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.01 -9.04 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439281272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.267 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds