Wall clock time and date at job start Fri Apr 10 2020 17:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.36330 * 125.86591 * 85.02184 * 10 9 7 12 12 C 1.35118 * 108.90231 * 179.97438 * 11 10 9 13 13 C 1.40988 * 108.23969 * 359.97438 * 12 11 10 14 14 N 1.33301 * 126.36056 * 180.02562 * 13 12 11 15 15 C 1.32908 * 119.99776 * 359.97255 * 14 13 12 16 16 O 1.21592 * 120.00060 * 0.02562 * 15 14 13 17 17 C 1.50705 * 119.99766 * 180.02562 * 15 14 13 18 18 H 1.09002 * 109.47174 * 299.99625 * 17 15 14 19 19 C 1.52997 * 109.47370 * 59.99933 * 17 15 14 20 20 C 1.53005 * 109.47014 * 180.02562 * 19 17 15 21 21 C 1.52998 * 109.47079 * 300.00001 * 20 19 17 22 22 C 1.52997 * 109.47199 * 60.00112 * 21 20 19 23 23 H 1.09001 * 109.47168 * 180.02562 * 22 21 20 24 24 O 1.42898 * 109.47278 * 59.99884 * 22 21 20 25 25 C 1.52998 * 109.46903 * 180.02562 * 17 15 14 26 26 N 1.37290 * 107.28200 * 359.75538 * 13 12 11 27 27 H 0.97001 * 126.34483 * 180.25769 * 26 13 12 28 28 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 30 30 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 31 31 H 1.08003 * 125.54785 * 359.95425 * 11 10 9 32 32 H 1.08001 * 125.88443 * 179.97438 * 12 11 10 33 33 H 1.08996 * 109.46919 * 299.99966 * 19 17 15 34 34 H 1.09000 * 109.47175 * 60.00270 * 19 17 15 35 35 H 1.09000 * 109.46932 * 60.00117 * 20 19 17 36 36 H 1.08998 * 109.46687 * 179.97438 * 20 19 17 37 37 H 1.08997 * 109.46815 * 180.02562 * 21 20 19 38 38 H 1.09002 * 109.46863 * 300.00100 * 21 20 19 39 39 H 0.96699 * 114.00180 * 60.00058 * 24 22 21 40 40 H 1.09000 * 109.47333 * 299.99541 * 25 17 15 41 41 H 1.08998 * 109.47480 * 60.00011 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9999 -2.5754 -0.0013 11 6 4.1761 -3.3591 -1.1028 12 6 4.6396 -4.5665 -0.7112 13 6 4.7657 -4.5566 0.6930 14 7 5.1929 -5.5633 1.4552 15 6 5.5490 -6.7153 0.8962 16 8 5.4855 -6.8508 -0.3105 17 6 6.0314 -7.8536 1.7580 18 1 6.9195 -7.5421 2.3077 19 6 4.9316 -8.2467 2.7463 20 6 5.4217 -9.4020 3.6217 21 6 5.7650 -10.6021 2.7370 22 6 6.8648 -10.2090 1.7486 23 1 7.1091 -11.0639 1.1180 24 8 8.0290 -9.7999 2.4693 25 6 6.3749 -9.0533 0.8728 26 7 4.3727 -3.3155 1.1290 27 1 4.3543 -3.0086 2.0490 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.6797 -0.8895 30 1 3.8746 -0.6808 0.8905 31 1 3.9774 -3.0633 -2.1223 32 1 4.8731 -5.3963 -1.3618 33 1 4.6873 -7.3918 3.3769 34 1 4.0435 -8.5583 2.1966 35 1 6.3096 -9.0899 4.1714 36 1 4.6383 -9.6816 4.3261 37 1 6.1137 -11.4252 3.3606 38 1 4.8770 -10.9140 2.1872 39 1 8.3951 -10.4842 3.0462 40 1 5.4870 -9.3651 0.3227 41 1 7.1586 -8.7731 0.1690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439281272.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:13 Heat of formation + Delta-G solvation = -21.889342 kcal Electronic energy + Delta-G solvation = -23125.191956 eV Core-core repulsion = 19620.234981 eV Total energy + Delta-G solvation = -3504.956976 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.39281 -40.74901 -39.12072 -36.04459 -35.75017 -34.63306 -32.72271 -32.59450 -31.83187 -30.68419 -28.83357 -25.43292 -24.15068 -23.36775 -22.85478 -22.61424 -20.88541 -20.17707 -19.29084 -18.44667 -17.67743 -17.19640 -16.93549 -16.60869 -16.42034 -15.93037 -15.63710 -15.36328 -15.10317 -14.81221 -14.65060 -14.43013 -14.25656 -13.81292 -13.79561 -13.39924 -13.18451 -13.14940 -12.61647 -12.56327 -12.29507 -12.11944 -11.84752 -11.74368 -11.55672 -11.27796 -11.20810 -10.94036 -10.64675 -10.55362 -10.48018 -9.85101 -8.50085 -8.42758 -6.58549 0.12487 0.52852 1.38381 1.39158 1.48328 1.50113 2.24552 2.69207 2.86652 2.90983 3.42100 3.49094 3.82658 3.85222 3.99390 4.11431 4.25216 4.30537 4.34067 4.41170 4.53878 4.54854 4.56209 4.66977 4.75252 4.83833 4.98372 5.09156 5.12121 5.12953 5.20458 5.25931 5.26682 5.34385 5.44766 5.55169 5.86900 5.99096 6.10800 6.46171 6.54843 6.83459 7.04692 7.07736 7.87577 8.72138 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.037870 B = 0.002809 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.187376 B = 9965.247588 C =10186.470139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.266 1.266 5 H -0.224 1.224 6 H -0.285 1.285 7 C -0.568 4.568 8 H 0.033 0.967 9 C 0.233 3.767 10 N -0.344 5.344 11 C 0.182 3.818 12 C -0.347 4.347 13 C 0.452 3.548 14 N -0.709 5.709 15 C 0.481 3.519 16 O -0.614 6.614 17 C -0.066 4.066 18 H 0.088 0.912 19 C -0.097 4.097 20 C -0.108 4.108 21 C -0.147 4.147 22 C 0.111 3.889 23 H 0.072 0.928 24 O -0.580 6.580 25 C -0.092 4.092 26 N -0.462 5.462 27 H 0.454 0.546 28 H 0.274 0.726 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.229 0.771 32 H 0.174 0.826 33 H 0.061 0.939 34 H 0.046 0.954 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.392 0.608 40 H 0.070 0.930 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.202 -12.618 4.097 18.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.177 4.177 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.147 1.147 6 H -0.211 1.211 7 C -0.606 4.606 8 H 0.051 0.949 9 C 0.115 3.885 10 N -0.129 5.129 11 C 0.037 3.963 12 C -0.378 4.378 13 C 0.203 3.797 14 N -0.473 5.473 15 C 0.268 3.732 16 O -0.499 6.499 17 C -0.087 4.087 18 H 0.106 0.894 19 C -0.135 4.135 20 C -0.146 4.146 21 C -0.185 4.185 22 C 0.052 3.948 23 H 0.090 0.910 24 O -0.388 6.388 25 C -0.130 4.130 26 N -0.185 5.185 27 H 0.303 0.697 28 H 0.083 0.917 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.245 0.755 32 H 0.191 0.809 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.242 0.758 40 H 0.089 0.911 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 12.861 -11.659 4.134 17.844 hybrid contribution -0.532 0.410 0.028 0.672 sum 12.328 -11.249 4.162 17.201 Atomic orbital electron populations 1.70034 1.08748 1.29083 1.49467 1.25842 0.95550 1.03450 0.92897 0.85708 0.80081 0.77495 0.79629 1.19080 1.14679 1.21062 1.21410 0.90605 0.93917 1.54634 0.94907 1.20326 0.93380 0.72763 1.02033 1.47528 1.56127 1.12028 0.97192 1.23463 0.90319 0.89339 0.93182 1.22425 1.19518 1.00899 0.95006 1.19554 0.85267 0.84188 0.90698 1.68857 1.38509 1.02313 1.37594 1.21596 0.76658 0.87795 0.87106 1.90483 1.55329 1.85366 1.18703 1.20727 0.99652 0.92133 0.96208 0.89431 1.21344 0.96135 0.99115 0.96887 1.21429 1.01497 0.94164 0.97465 1.22246 0.99388 0.98365 0.98486 1.21755 0.85309 0.95325 0.92383 0.90985 1.86525 1.44396 1.45122 1.62767 1.21355 1.00667 0.94222 0.96798 1.44549 1.60965 1.08993 1.03982 0.69736 0.91714 0.88490 0.91509 0.75475 0.80900 0.92031 0.93477 0.91239 0.90755 0.89072 0.90971 0.75844 0.91126 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.28 13.96 21.45 0.30 -51.98 16 2 C 0.02 1.15 5.47 84.66 0.46 1.62 16 3 Si 0.95 35.02 27.47 68.60 1.88 36.90 16 4 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 5 H -0.22 -6.84 6.54 99.48 0.65 -6.19 16 6 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 7 C -0.57 -27.23 9.94 25.60 0.25 -26.97 16 8 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 9 C 0.23 8.22 5.26 85.63 0.45 8.67 16 10 N -0.34 -11.78 3.63 -350.79 -1.27 -13.06 16 11 C 0.18 5.73 11.46 83.28 0.95 6.68 16 12 C -0.35 -12.86 9.51 22.22 0.21 -12.65 16 13 C 0.45 17.68 8.07 133.83 1.08 18.76 16 14 N -0.71 -28.70 10.31 -309.87 -3.19 -31.90 16 15 C 0.48 19.36 7.04 87.95 0.62 19.98 16 16 O -0.61 -27.15 12.89 -4.01 -0.05 -27.20 16 17 C -0.07 -2.11 2.45 -11.54 -0.03 -2.14 16 18 H 0.09 2.90 7.68 -2.39 -0.02 2.88 16 19 C -0.10 -2.68 5.11 30.59 0.16 -2.52 16 20 C -0.11 -2.13 5.78 30.60 0.18 -1.95 16 21 C -0.15 -2.36 5.64 30.59 0.17 -2.19 16 22 C 0.11 2.16 3.77 30.61 0.12 2.28 16 23 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 24 O -0.58 -11.34 11.97 -148.98 -1.78 -13.12 16 25 C -0.09 -2.60 4.24 30.61 0.13 -2.47 16 26 N -0.46 -15.94 7.37 -54.81 -0.40 -16.35 16 27 H 0.45 13.61 8.96 -213.28 -1.91 11.69 16 28 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.10 2.93 7.20 -2.38 -0.02 2.92 16 30 H 0.07 2.14 7.57 -2.39 -0.02 2.12 16 31 H 0.23 5.15 8.06 -2.91 -0.02 5.13 16 32 H 0.17 6.89 5.77 -2.91 -0.02 6.87 16 33 H 0.06 1.85 8.05 -2.39 -0.02 1.83 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.37 7.68 -2.39 -0.02 1.35 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.39 3.76 9.08 -74.06 -0.67 3.09 16 40 H 0.07 2.05 8.10 -2.39 -0.02 2.03 16 41 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 Total: -1.00 -70.88 335.42 -1.35 -72.22 By element: Atomic # 1 Polarization: 38.97 SS G_CDS: -1.58 Total: 37.39 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 4.76 Total: 7.09 kcal Atomic # 7 Polarization: -108.71 SS G_CDS: -4.57 Total: -113.28 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.83 Total: -40.32 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 1.88 Total: 36.90 kcal Total: -70.88 -1.35 -72.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439281272.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.335 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds