Wall clock time and date at job start Fri Apr 10 2020 17:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.46825 * 180.02562 * 9 7 2 11 11 C 1.36330 * 125.86554 * 85.02228 * 10 9 7 12 12 C 1.35119 * 108.89839 * 179.97438 * 11 10 9 13 13 C 1.40983 * 108.24273 * 0.02562 * 12 11 10 14 14 N 1.33302 * 126.36269 * 179.97438 * 13 12 11 15 15 C 1.32907 * 119.99922 * 0.02562 * 14 13 12 16 16 O 1.21591 * 119.99854 * 359.97438 * 15 14 13 17 17 C 1.50706 * 120.00376 * 180.02562 * 15 14 13 18 18 H 1.08998 * 109.46400 * 299.99887 * 17 15 14 19 19 C 1.53001 * 109.46771 * 59.99355 * 17 15 14 20 20 C 1.53002 * 109.46581 * 179.97438 * 19 17 15 21 21 C 1.52994 * 109.47520 * 300.00408 * 20 19 17 22 22 C 1.52995 * 109.47172 * 59.99817 * 21 20 19 23 23 H 1.09003 * 109.47334 * 60.00265 * 22 21 20 24 24 O 1.42907 * 109.47162 * 179.97438 * 22 21 20 25 25 C 1.52996 * 109.46872 * 179.97438 * 17 15 14 26 26 N 1.37287 * 107.28136 * 359.76606 * 13 12 11 27 27 H 0.97001 * 126.34516 * 180.25142 * 26 13 12 28 28 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 30 30 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 31 31 H 1.08000 * 125.55114 * 359.97438 * 11 10 9 32 32 H 1.08004 * 125.88570 * 180.02562 * 12 11 10 33 33 H 1.08995 * 109.47430 * 300.00456 * 19 17 15 34 34 H 1.09001 * 109.46731 * 60.00917 * 19 17 15 35 35 H 1.09004 * 109.47041 * 179.97438 * 20 19 17 36 36 H 1.09010 * 109.46838 * 60.00770 * 20 19 17 37 37 H 1.09003 * 109.46774 * 299.99740 * 21 20 19 38 38 H 1.08999 * 109.47323 * 180.02562 * 21 20 19 39 39 H 0.96697 * 113.99905 * 300.00217 * 24 22 21 40 40 H 1.08994 * 109.47452 * 299.99643 * 25 17 15 41 41 H 1.09002 * 109.47464 * 60.00540 * 25 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 4.1763 -3.3600 -1.0998 12 6 4.6397 -4.5669 -0.7071 13 6 4.7647 -4.5562 0.6972 14 7 5.1906 -5.5626 1.4605 15 6 5.5475 -6.7149 0.9025 16 8 5.4850 -6.8512 -0.3041 17 6 6.0285 -7.8530 1.7654 18 1 6.9158 -7.5412 2.3164 19 6 4.9271 -8.2454 2.7523 20 6 5.4152 -9.4013 3.6279 21 6 5.7589 -10.6014 2.7434 22 6 6.8601 -10.2089 1.7566 23 1 7.7477 -9.8976 2.3075 24 8 7.1816 -11.3300 0.9308 25 6 6.3720 -9.0534 0.8813 26 7 4.3708 -3.3150 1.1321 27 1 4.3514 -3.0077 2.0520 28 1 -0.4850 0.8400 -0.0004 29 1 3.8753 -0.6803 -0.8889 30 1 3.8746 -0.6799 0.8911 31 1 3.9778 -3.0650 -2.1196 32 1 4.8741 -5.3971 -1.3569 33 1 4.6820 -7.3903 3.3821 34 1 4.0398 -8.5572 2.2013 35 1 4.6308 -9.6806 4.3314 36 1 6.3028 -9.0900 4.1790 37 1 4.8713 -10.9127 2.1925 38 1 6.1062 -11.4250 3.3673 39 1 7.4988 -12.1011 1.4205 40 1 5.4844 -9.3650 0.3307 41 1 7.1565 -8.7741 0.1780 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439281276.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:16 Heat of formation + Delta-G solvation = -0.484385 kcal Electronic energy + Delta-G solvation = -22986.407381 eV Core-core repulsion = 19482.378594 eV Total energy + Delta-G solvation = -3504.028787 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98309 -39.53457 -37.90519 -35.45469 -34.29850 -32.95741 -31.26056 -31.18586 -30.76421 -29.43116 -27.22860 -24.14846 -22.65416 -22.27808 -21.54480 -21.31529 -19.97958 -18.95863 -17.47602 -17.22157 -16.87071 -15.84263 -15.52349 -15.08069 -15.00810 -14.62730 -14.45862 -14.25546 -14.00977 -13.66310 -13.05994 -13.04634 -13.00153 -12.71937 -12.51729 -12.33967 -12.16712 -11.56696 -11.53228 -11.09589 -11.06914 -10.80046 -10.68188 -10.49606 -10.40761 -10.10282 -9.83889 -9.71221 -9.25076 -9.13288 -9.08649 -8.37764 -7.01384 -6.55753 -4.64888 1.54378 1.91265 2.91094 2.93466 2.97381 3.04386 3.93470 3.95324 4.18513 4.26607 4.62649 4.71497 4.72512 4.93308 5.11685 5.14236 5.20678 5.29298 5.37970 5.49443 5.54863 5.61462 5.68101 5.84248 5.91032 6.00506 6.01805 6.04535 6.20795 6.21178 6.26585 6.40211 6.49939 6.55615 6.64683 6.88004 7.31873 7.49073 7.56157 7.78659 7.99009 8.26737 8.47527 8.96152 9.32428 10.55747 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038635 B = 0.002747 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.552303 B =10192.072234 C =10476.604311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.084 3.916 3 Si 0.875 3.125 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.277 1.277 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.228 3.772 10 N -0.340 5.340 11 C 0.166 3.834 12 C -0.330 4.330 13 C 0.472 3.528 14 N -0.698 5.698 15 C 0.499 3.501 16 O -0.583 6.583 17 C -0.074 4.074 18 H 0.088 0.912 19 C -0.104 4.104 20 C -0.116 4.116 21 C -0.152 4.152 22 C 0.105 3.895 23 H 0.053 0.947 24 O -0.568 6.568 25 C -0.093 4.093 26 N -0.465 5.465 27 H 0.446 0.554 28 H 0.273 0.727 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.190 0.810 32 H 0.185 0.815 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.373 0.627 40 H 0.073 0.927 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.718 -11.494 4.836 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.123 4.123 3 Si 0.700 3.300 4 H -0.193 1.193 5 H -0.190 1.190 6 H -0.202 1.202 7 C -0.604 4.604 8 H 0.104 0.896 9 C 0.110 3.890 10 N -0.125 5.125 11 C 0.021 3.979 12 C -0.362 4.362 13 C 0.222 3.778 14 N -0.462 5.462 15 C 0.284 3.716 16 O -0.465 6.465 17 C -0.096 4.096 18 H 0.106 0.894 19 C -0.142 4.142 20 C -0.153 4.153 21 C -0.190 4.190 22 C 0.046 3.954 23 H 0.071 0.929 24 O -0.373 6.373 25 C -0.131 4.131 26 N -0.187 5.187 27 H 0.293 0.707 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.207 0.793 32 H 0.202 0.798 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.219 0.781 40 H 0.092 0.908 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.266 -10.647 4.703 16.198 hybrid contribution 0.248 0.693 0.357 0.819 sum 11.514 -9.954 5.060 16.039 Atomic orbital electron populations 1.69856 1.06260 1.27942 1.46968 1.24829 0.94871 0.98993 0.93586 0.86889 0.80191 0.83584 0.79316 1.19305 1.18956 1.20241 1.21236 0.87756 0.95955 1.55450 0.89633 1.20365 0.96913 0.71977 0.99749 1.47503 1.56236 1.11984 0.96765 1.22902 0.92479 0.90493 0.92062 1.22515 1.18157 1.00217 0.95271 1.19259 0.84838 0.83700 0.89978 1.68737 1.38295 1.01941 1.37209 1.20627 0.77349 0.86816 0.86790 1.90536 1.53776 1.84730 1.17489 1.20756 0.99577 0.92973 0.96262 0.89395 1.21432 0.97371 0.98222 0.97171 1.21502 1.01234 0.94935 0.97658 1.22288 1.00185 0.98322 0.98156 1.21845 0.95737 0.86782 0.91013 0.92923 1.86552 1.88068 1.24923 1.37742 1.21253 1.02570 0.92022 0.97286 1.44518 1.61287 1.09427 1.03492 0.70697 0.91650 0.92103 0.93283 0.79279 0.79764 0.90202 0.92067 0.91648 0.91833 0.91125 0.92134 0.78067 0.90802 0.90992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.73 13.96 55.43 0.77 -22.96 16 2 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 3 Si 0.87 17.66 27.47 -169.99 -4.67 12.99 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.26 -4.96 6.54 56.52 0.37 -4.59 16 6 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 7 C -0.57 -13.55 9.94 -34.44 -0.34 -13.89 16 8 H 0.09 2.36 8.06 -52.49 -0.42 1.93 16 9 C 0.23 4.29 5.26 -5.19 -0.03 4.26 16 10 N -0.34 -5.99 3.63 -62.23 -0.23 -6.22 16 11 C 0.17 2.69 11.46 -16.66 -0.19 2.50 16 12 C -0.33 -5.98 9.51 -39.65 -0.38 -6.36 16 13 C 0.47 8.87 8.07 -155.18 -1.25 7.62 16 14 N -0.70 -13.23 10.31 -11.59 -0.12 -13.35 16 15 C 0.50 9.36 7.04 -11.81 -0.08 9.28 16 16 O -0.58 -12.27 12.89 5.29 0.07 -12.20 16 17 C -0.07 -1.09 2.60 -91.77 -0.24 -1.33 16 18 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 19 C -0.10 -1.34 5.11 -26.73 -0.14 -1.48 16 20 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 21 C -0.15 -1.46 5.54 -26.74 -0.15 -1.61 16 22 C 0.10 1.17 3.47 -26.76 -0.09 1.07 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 O -0.57 -6.40 13.32 -35.23 -0.47 -6.87 16 25 C -0.09 -1.33 4.14 -26.76 -0.11 -1.44 16 26 N -0.46 -7.95 7.37 31.32 0.23 -7.72 16 27 H 0.45 6.60 8.96 -182.55 -1.64 4.96 16 28 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.06 1.04 7.57 -51.93 -0.39 0.65 16 30 H 0.05 0.89 7.20 -51.93 -0.37 0.51 16 31 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 32 H 0.19 3.53 5.77 -52.48 -0.30 3.23 16 33 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.37 2.39 9.08 45.56 0.41 2.80 16 40 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 41 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 337.49 15.07 5.09 5.09 Total: -1.00 -30.98 337.49 -9.10 -40.08 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -6.52 Total: 11.87 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -3.26 Total: -0.71 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 0.66 Total: -50.25 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.40 Total: -19.07 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -4.67 Total: 12.99 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.98 -9.10 -40.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439281276.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.599 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds