Wall clock time and date at job start Fri Apr 10 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47540 * 332.58375 * 3 2 1 5 5 C 1.34781 * 120.00141 * 179.97438 * 4 3 2 6 6 O 1.21274 * 119.99736 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99818 * 180.02562 * 5 4 3 8 8 N 1.46903 * 109.46992 * 184.74800 * 7 5 4 9 9 C 1.46260 * 111.00027 * 63.93514 * 8 7 5 10 10 C 1.47550 * 114.37435 * 148.55798 * 9 8 7 11 11 C 1.54944 * 109.73267 * 62.21879 * 10 9 8 12 12 N 1.44675 * 109.51630 * 290.51618 * 11 10 9 13 13 C 1.34774 * 118.54975 * 269.08100 * 12 11 10 14 14 O 1.21687 * 120.00500 * 179.97438 * 13 12 11 15 15 C 1.46372 * 120.00014 * 0.02562 * 13 12 11 16 16 H 1.08001 * 120.00140 * 5.45219 * 15 13 12 17 17 C 1.40057 * 120.00094 * 185.45833 * 15 13 12 18 18 N 1.30670 * 120.00079 * 5.16446 * 17 15 13 19 19 Si 1.86804 * 119.99793 * 185.16730 * 17 15 13 20 20 H 1.48500 * 109.46878 * 264.99849 * 19 17 15 21 21 H 1.48498 * 109.47394 * 25.00117 * 19 17 15 22 22 H 1.48500 * 109.47162 * 145.00381 * 19 17 15 23 23 C 1.47776 * 122.90361 * 89.36507 * 12 11 10 24 24 C 1.44764 * 110.99942 * 300.43999 * 8 7 5 25 25 H 4.40637 * 5.51455 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.47043 * 212.58353 * 3 2 1 27 27 H 1.09001 * 109.47138 * 92.58835 * 3 2 1 28 28 H 0.96997 * 120.00066 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.47626 * 64.74852 * 7 5 4 30 30 H 1.09001 * 109.47281 * 304.74268 * 7 5 4 31 31 H 1.09003 * 108.50586 * 27.29386 * 9 8 7 32 32 H 1.09004 * 108.50645 * 269.82468 * 9 8 7 33 33 H 1.08994 * 109.42702 * 302.13265 * 10 9 8 34 34 H 1.09006 * 109.42374 * 182.29784 * 10 9 8 35 35 H 1.09004 * 109.45879 * 170.50885 * 11 10 9 36 36 H 1.08996 * 109.45714 * 50.52892 * 11 10 9 37 37 H 0.97003 * 120.00004 * 180.02562 * 18 17 15 38 38 H 1.09009 * 109.06424 * 78.36950 * 23 12 11 39 39 H 1.09001 * 109.06523 * 197.29234 * 23 12 11 40 40 H 1.09006 * 109.43476 * 337.92411 * 24 8 7 41 41 H 1.08995 * 109.43253 * 97.83602 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2251 0.6359 5 6 4.4601 -1.4433 0.7489 6 8 5.2477 -0.6247 0.3244 7 6 4.9630 -2.7046 1.4025 8 7 6.4276 -2.6527 1.5046 9 6 6.8537 -1.5617 2.3805 10 6 8.1043 -1.8257 3.1177 11 6 9.2711 -2.0181 2.1164 12 7 9.0927 -3.2622 1.3998 13 6 9.6498 -4.3813 1.9034 14 8 9.5161 -5.4422 1.3225 15 6 10.4149 -4.3209 3.1498 16 1 10.4596 -3.3997 3.7119 17 6 11.0892 -5.4575 3.6134 18 7 11.1196 -6.5417 2.8847 19 14 11.9449 -5.4235 5.2736 20 1 13.3785 -5.0854 5.0847 21 1 11.3049 -4.4009 6.1396 22 1 11.8316 -6.7575 5.9163 23 6 8.3317 -3.3590 0.1367 24 6 7.0345 -2.5239 0.1966 25 1 -1.0498 -0.0005 0.0000 26 1 3.0089 0.8668 0.5535 27 1 3.0092 0.0472 -1.0266 28 1 2.5049 -1.8801 0.9751 29 1 4.6709 -3.5663 0.8024 30 1 4.5323 -2.7936 2.3999 31 1 6.0607 -1.3682 3.1029 32 1 6.9915 -0.6657 1.7752 33 1 7.9882 -2.7286 3.7171 34 1 8.3239 -0.9825 3.7726 35 1 10.2155 -2.0444 2.6601 36 1 9.2824 -1.1895 1.4085 37 1 11.5863 -7.3291 3.2060 38 1 8.9541 -2.9985 -0.6825 39 1 8.0755 -4.4027 -0.0455 40 1 6.3384 -2.8799 -0.5629 41 1 7.2721 -1.4769 0.0087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490974677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:18 Heat of formation + Delta-G solvation = 8.810565 kcal Electronic energy + Delta-G solvation = -23879.876985 eV Core-core repulsion = 20376.251257 eV Total energy + Delta-G solvation = -3503.625728 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42305 -38.43087 -36.62222 -35.53754 -33.73405 -32.95343 -32.59657 -31.74446 -29.58847 -27.53614 -26.04203 -25.44611 -24.41411 -21.43853 -21.00246 -20.25404 -18.95649 -18.63305 -17.06807 -16.53499 -16.24917 -15.91843 -15.64247 -15.25619 -14.95596 -14.62736 -14.10853 -14.02606 -13.79784 -13.49665 -13.16852 -12.98221 -12.64979 -12.16067 -11.90293 -11.56631 -11.27098 -11.21560 -10.99177 -10.95563 -10.90021 -10.81628 -10.56279 -10.39049 -10.27665 -10.13821 -9.97211 -9.81555 -9.35961 -8.73523 -7.90496 -7.39553 -6.95024 -6.08512 -4.49530 2.01533 2.31495 2.47059 3.19592 3.24217 3.27121 3.30841 3.83469 4.06950 4.20087 4.65874 4.68881 4.82589 5.08649 5.17201 5.20976 5.27265 5.41282 5.44869 5.62427 5.73489 5.88815 5.91797 6.00328 6.04593 6.19148 6.22935 6.30924 6.40276 6.63298 6.76266 6.80116 7.00122 7.04820 7.11981 7.36462 7.49549 7.56742 7.93792 8.01117 8.32594 8.52355 9.15251 9.64013 10.72256 10.93074 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033648 B = 0.003278 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.941119 B = 8539.114713 C = 8712.040446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.208 4.208 3 C 0.228 3.772 4 N -0.733 5.733 5 C 0.481 3.519 6 O -0.532 6.532 7 C 0.040 3.960 8 N -0.495 5.495 9 C 0.066 3.934 10 C -0.140 4.140 11 C 0.136 3.864 12 N -0.627 5.627 13 C 0.561 3.439 14 O -0.583 6.583 15 C -0.542 4.542 16 H 0.072 0.928 17 C 0.088 3.912 18 N -0.771 5.771 19 Si 0.902 3.098 20 H -0.274 1.274 21 H -0.264 1.264 22 H -0.280 1.280 23 C 0.129 3.871 24 C 0.051 3.949 25 H 0.222 0.778 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.403 0.597 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.266 0.734 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.060 0.940 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.531 12.209 -2.207 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.208 4.208 3 C 0.105 3.895 4 N -0.388 5.388 5 C 0.267 3.733 6 O -0.408 6.408 7 C -0.092 4.092 8 N -0.216 5.216 9 C -0.061 4.061 10 C -0.180 4.180 11 C 0.011 3.989 12 N -0.364 5.364 13 C 0.366 3.634 14 O -0.466 6.466 15 C -0.579 4.579 16 H 0.090 0.910 17 C -0.131 4.131 18 N -0.400 5.400 19 Si 0.727 3.273 20 H -0.200 1.200 21 H -0.189 1.189 22 H -0.206 1.206 23 C 0.004 3.996 24 C -0.079 4.079 25 H 0.238 0.762 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.238 0.762 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.736 11.596 -2.668 20.535 hybrid contribution -0.628 0.632 0.665 1.112 sum -17.363 12.228 -2.003 21.332 Atomic orbital electron populations 1.25028 0.95959 0.98098 1.00099 1.22988 0.94332 1.02296 1.01224 1.18058 0.82976 0.88835 0.99583 1.46269 1.07841 1.22452 1.62231 1.22657 0.81513 0.90053 0.79101 1.90713 1.54724 1.47113 1.48243 1.22595 0.90491 0.94140 1.02013 1.61228 1.02390 1.45682 1.12306 1.20999 0.97730 0.91865 0.95509 1.21464 0.95467 1.02164 0.98865 1.21120 0.97752 0.86688 0.93379 1.47548 1.56123 1.08726 1.23995 1.18204 0.78544 0.81340 0.85301 1.90560 1.63982 1.29042 1.63049 1.21018 1.32282 0.97673 1.06887 0.91002 1.25719 0.94927 0.94919 0.97491 1.70017 1.32710 1.01922 1.35372 0.86458 0.79763 0.78196 0.82919 1.20007 1.18862 1.20561 1.21525 0.90173 1.00849 0.87047 1.22498 0.96459 0.99950 0.88946 0.76152 0.89233 0.89197 0.76236 0.87524 0.87915 0.93410 0.93574 0.90323 0.91851 0.90099 0.93987 0.92336 0.94409 0.90156 0.92185 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 19.25 29.55 0.57 -0.54 16 2 C -0.21 -1.65 13.46 -37.12 -0.50 -2.15 16 3 C 0.23 1.96 6.15 -6.83 -0.04 1.91 16 4 N -0.73 -6.45 5.54 -63.16 -0.35 -6.80 16 5 C 0.48 5.68 7.15 -10.99 -0.08 5.60 16 6 O -0.53 -8.08 12.56 5.56 0.07 -8.01 16 7 C 0.04 0.48 5.48 -4.98 -0.03 0.45 16 8 N -0.49 -8.12 4.38 -240.79 -1.05 -9.17 16 9 C 0.07 1.06 4.08 -6.80 -0.03 1.03 16 10 C -0.14 -2.44 6.02 -28.33 -0.17 -2.61 16 11 C 0.14 2.70 5.12 -3.99 -0.02 2.68 16 12 N -0.63 -14.75 2.53 -173.65 -0.44 -15.19 16 13 C 0.56 16.25 7.55 -12.99 -0.10 16.15 16 14 O -0.58 -19.24 14.35 5.20 0.07 -19.17 16 15 C -0.54 -15.34 8.60 -35.63 -0.31 -15.64 16 16 H 0.07 1.86 5.98 -52.49 -0.31 1.55 16 17 C 0.09 2.50 5.49 -17.36 -0.10 2.40 16 18 N -0.77 -23.47 11.88 55.55 0.66 -22.81 16 19 Si 0.90 20.39 29.56 -169.99 -5.03 15.36 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.13 2.68 6.49 -2.61 -0.02 2.67 16 24 C 0.05 0.86 4.14 -4.24 -0.02 0.85 16 25 H 0.22 0.64 7.80 -54.10 -0.42 0.22 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.40 2.63 8.45 -40.82 -0.34 2.29 16 29 H 0.11 1.14 8.07 -51.93 -0.42 0.72 16 30 H 0.10 1.04 7.93 -51.93 -0.41 0.63 16 31 H 0.05 0.68 7.55 -51.93 -0.39 0.29 16 32 H 0.05 0.77 6.02 -51.93 -0.31 0.46 16 33 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.67 5.92 -51.93 -0.31 1.36 16 36 H 0.04 0.75 8.09 -51.93 -0.42 0.33 16 37 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 38 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.08 1.88 6.96 -51.93 -0.36 1.52 16 40 H 0.06 0.93 7.47 -51.93 -0.39 0.54 16 41 H 0.06 0.98 6.08 -51.93 -0.32 0.67 16 LS Contribution 336.40 15.07 5.07 5.07 Total: -1.00 -36.99 336.40 -7.48 -44.47 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -5.66 Total: 3.46 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -0.83 Total: 12.78 kcal Atomic # 7 Polarization: -52.79 SS G_CDS: -1.18 Total: -53.97 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: 0.14 Total: -27.17 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.99 -7.48 -44.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490974677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.281 kcal (2) G-P(sol) polarization free energy of solvation -36.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds