Wall clock time and date at job start Fri Apr 10 2020 17:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17390 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47540 * 332.58375 * 3 2 1 5 5 C 1.34781 * 120.00141 * 179.97438 * 4 3 2 6 6 O 1.21274 * 119.99736 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99818 * 180.02562 * 5 4 3 8 8 N 1.46903 * 109.46992 * 184.74800 * 7 5 4 9 9 C 1.46260 * 111.00027 * 63.93514 * 8 7 5 10 10 C 1.47550 * 114.37435 * 148.55798 * 9 8 7 11 11 C 1.54944 * 109.73267 * 62.21879 * 10 9 8 12 12 N 1.44675 * 109.51630 * 290.51618 * 11 10 9 13 13 C 1.34774 * 118.54975 * 269.08100 * 12 11 10 14 14 O 1.21687 * 120.00500 * 179.97438 * 13 12 11 15 15 C 1.46372 * 120.00014 * 0.02562 * 13 12 11 16 16 H 1.08001 * 120.00140 * 5.45219 * 15 13 12 17 17 C 1.40057 * 120.00094 * 185.45833 * 15 13 12 18 18 N 1.30670 * 120.00079 * 5.16446 * 17 15 13 19 19 Si 1.86804 * 119.99793 * 185.16730 * 17 15 13 20 20 H 1.48500 * 109.46878 * 264.99849 * 19 17 15 21 21 H 1.48498 * 109.47394 * 25.00117 * 19 17 15 22 22 H 1.48500 * 109.47162 * 145.00381 * 19 17 15 23 23 C 1.47776 * 122.90361 * 89.36507 * 12 11 10 24 24 C 1.44764 * 110.99942 * 300.43999 * 8 7 5 25 25 H 4.40637 * 5.51455 * 180.02562 * 4 1 2 26 26 H 1.09005 * 109.47043 * 212.58353 * 3 2 1 27 27 H 1.09001 * 109.47138 * 92.58835 * 3 2 1 28 28 H 0.96997 * 120.00066 * 0.02562 * 4 3 2 29 29 H 1.08996 * 109.47626 * 64.74852 * 7 5 4 30 30 H 1.09001 * 109.47281 * 304.74268 * 7 5 4 31 31 H 1.09003 * 108.50586 * 27.29386 * 9 8 7 32 32 H 1.09004 * 108.50645 * 269.82468 * 9 8 7 33 33 H 1.08994 * 109.42702 * 302.13265 * 10 9 8 34 34 H 1.09006 * 109.42374 * 182.29784 * 10 9 8 35 35 H 1.09004 * 109.45879 * 170.50885 * 11 10 9 36 36 H 1.08996 * 109.45714 * 50.52892 * 11 10 9 37 37 H 0.97003 * 120.00004 * 180.02562 * 18 17 15 38 38 H 1.09009 * 109.06424 * 78.36950 * 23 12 11 39 39 H 1.09001 * 109.06523 * 197.29234 * 23 12 11 40 40 H 1.09006 * 109.43476 * 337.92411 * 24 8 7 41 41 H 1.08995 * 109.43253 * 97.83602 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1349 -1.2251 0.6359 5 6 4.4601 -1.4433 0.7489 6 8 5.2477 -0.6247 0.3244 7 6 4.9630 -2.7046 1.4025 8 7 6.4276 -2.6527 1.5046 9 6 6.8537 -1.5617 2.3805 10 6 8.1043 -1.8257 3.1177 11 6 9.2711 -2.0181 2.1164 12 7 9.0927 -3.2622 1.3998 13 6 9.6498 -4.3813 1.9034 14 8 9.5161 -5.4422 1.3225 15 6 10.4149 -4.3209 3.1498 16 1 10.4596 -3.3997 3.7119 17 6 11.0892 -5.4575 3.6134 18 7 11.1196 -6.5417 2.8847 19 14 11.9449 -5.4235 5.2736 20 1 13.3785 -5.0854 5.0847 21 1 11.3049 -4.4009 6.1396 22 1 11.8316 -6.7575 5.9163 23 6 8.3317 -3.3590 0.1367 24 6 7.0345 -2.5239 0.1966 25 1 -1.0498 -0.0005 0.0000 26 1 3.0089 0.8668 0.5535 27 1 3.0092 0.0472 -1.0266 28 1 2.5049 -1.8801 0.9751 29 1 4.6709 -3.5663 0.8024 30 1 4.5323 -2.7936 2.3999 31 1 6.0607 -1.3682 3.1029 32 1 6.9915 -0.6657 1.7752 33 1 7.9882 -2.7286 3.7171 34 1 8.3239 -0.9825 3.7726 35 1 10.2155 -2.0444 2.6601 36 1 9.2824 -1.1895 1.4085 37 1 11.5863 -7.3291 3.2060 38 1 8.9541 -2.9985 -0.6825 39 1 8.0755 -4.4027 -0.0455 40 1 6.3384 -2.8799 -0.5629 41 1 7.2721 -1.4769 0.0087 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490974677.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:18 Heat of formation + Delta-G solvation = -20.050812 kcal Electronic energy + Delta-G solvation = -23881.128508 eV Core-core repulsion = 20376.251257 eV Total energy + Delta-G solvation = -3504.877251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.49048 -39.99724 -38.22906 -36.47226 -35.41796 -34.65014 -33.61386 -33.42151 -30.84350 -28.78867 -27.82203 -26.85969 -25.76292 -23.21036 -22.07458 -21.36367 -20.60556 -19.51451 -18.33242 -17.89770 -17.73304 -17.27383 -17.02109 -16.53037 -16.24895 -15.99051 -15.78511 -15.16334 -14.96165 -14.76366 -14.40126 -14.29572 -14.20317 -13.80316 -13.41666 -13.23283 -12.87398 -12.78833 -12.59602 -12.41499 -12.19076 -11.97698 -11.95868 -11.87596 -11.62009 -11.50819 -11.37738 -11.25573 -10.85372 -10.14245 -9.64947 -9.13545 -8.87775 -8.21491 -6.71890 1.41539 1.42360 1.43993 1.53804 1.59405 1.80926 2.29147 2.52014 2.55786 2.81908 3.11323 3.33606 3.71385 3.82633 4.03014 4.11118 4.22618 4.29312 4.36843 4.47794 4.53194 4.55757 4.62733 4.76206 4.81882 4.84175 4.98079 5.00373 5.03915 5.11506 5.17946 5.31281 5.44058 5.55047 5.94932 6.07048 6.20694 6.29489 6.47447 6.55342 6.57929 6.97425 7.15820 7.59037 8.59948 8.78568 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.033648 B = 0.003278 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.941119 B = 8539.114713 C = 8712.040446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.249 4.249 3 C 0.231 3.769 4 N -0.717 5.717 5 C 0.487 3.513 6 O -0.568 6.568 7 C 0.040 3.960 8 N -0.523 5.523 9 C 0.071 3.929 10 C -0.130 4.130 11 C 0.130 3.870 12 N -0.625 5.625 13 C 0.543 3.457 14 O -0.638 6.638 15 C -0.562 4.562 16 H 0.091 0.909 17 C 0.029 3.971 18 N -0.827 5.827 19 Si 0.991 3.009 20 H -0.263 1.263 21 H -0.247 1.247 22 H -0.276 1.276 23 C 0.126 3.874 24 C 0.073 3.927 25 H 0.253 0.747 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.416 0.584 29 H 0.119 0.881 30 H 0.126 0.874 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.271 0.729 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.074 0.926 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.291 14.020 -0.546 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.249 4.249 3 C 0.109 3.891 4 N -0.371 5.371 5 C 0.273 3.727 6 O -0.447 6.447 7 C -0.091 4.091 8 N -0.245 5.245 9 C -0.056 4.056 10 C -0.169 4.169 11 C 0.006 3.994 12 N -0.360 5.360 13 C 0.349 3.651 14 O -0.526 6.526 15 C -0.599 4.599 16 H 0.109 0.891 17 C -0.186 4.186 18 N -0.457 5.457 19 Si 0.811 3.189 20 H -0.188 1.188 21 H -0.170 1.170 22 H -0.201 1.201 23 C 0.002 3.998 24 C -0.057 4.057 25 H 0.270 0.730 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.253 0.747 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.093 0.907 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.565 13.467 -1.010 22.957 hybrid contribution -0.207 0.109 0.067 0.244 sum -18.773 13.576 -0.942 23.187 Atomic orbital electron populations 1.25853 0.96709 0.95991 0.98026 1.23020 0.94535 1.04225 1.03126 1.17953 0.83839 0.88285 0.99063 1.46083 1.07112 1.22788 1.61162 1.22422 0.82118 0.89459 0.78747 1.90702 1.55814 1.48177 1.49991 1.22656 0.87898 0.94761 1.03783 1.61101 1.05212 1.46326 1.11823 1.20917 0.97568 0.91471 0.95668 1.21392 0.95227 1.01979 0.98290 1.21324 0.98490 0.85461 0.94145 1.47427 1.55334 1.08668 1.24577 1.18628 0.78875 0.81875 0.85726 1.90508 1.66073 1.31472 1.64566 1.21483 1.32345 0.98878 1.07168 0.89065 1.26965 0.95345 0.93997 1.02265 1.70198 1.34162 1.03112 1.38188 0.85107 0.78545 0.78684 0.76576 1.18786 1.17023 1.20101 1.21653 0.92229 0.99810 0.86126 1.22197 0.94623 0.98688 0.90162 0.73031 0.89693 0.89839 0.74743 0.86275 0.85622 0.91268 0.93802 0.93288 0.88697 0.91197 0.91908 0.91899 0.93910 0.93497 0.90728 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 19.25 74.32 1.43 -0.04 16 2 C -0.25 -3.48 13.46 31.13 0.42 -3.06 16 3 C 0.23 3.69 6.15 84.58 0.52 4.21 16 4 N -0.72 -11.26 5.54 -472.14 -2.61 -13.87 16 5 C 0.49 10.61 7.15 87.66 0.63 11.24 16 6 O -0.57 -16.49 12.56 -3.01 -0.04 -16.53 16 7 C 0.04 0.89 5.48 85.56 0.47 1.35 16 8 N -0.52 -16.60 4.38 -915.73 -4.01 -20.60 16 9 C 0.07 2.13 4.08 84.72 0.35 2.48 16 10 C -0.13 -4.33 6.02 29.56 0.18 -4.15 16 11 C 0.13 5.09 5.12 87.38 0.45 5.53 16 12 N -0.63 -30.11 2.53 -821.52 -2.08 -32.18 16 13 C 0.54 32.68 7.55 86.36 0.65 33.34 16 14 O -0.64 -44.39 14.35 -4.31 -0.06 -44.45 16 15 C -0.56 -32.39 8.60 24.83 0.21 -32.18 16 16 H 0.09 4.72 5.98 -2.91 -0.02 4.70 16 17 C 0.03 1.63 5.49 85.31 0.47 2.10 16 18 N -0.83 -51.97 11.88 21.84 0.26 -51.71 16 19 Si 0.99 41.88 29.56 68.60 2.03 43.91 16 20 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 21 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 22 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 23 C 0.13 5.42 6.49 86.61 0.56 5.99 16 24 C 0.07 2.45 4.14 87.18 0.36 2.81 16 25 H 0.25 0.46 7.80 -4.43 -0.03 0.42 16 26 H 0.09 1.42 8.14 -2.38 -0.02 1.41 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.42 4.43 8.45 -92.71 -0.78 3.65 16 29 H 0.12 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.13 2.18 7.93 -2.39 -0.02 2.16 16 31 H 0.07 1.78 7.55 -2.39 -0.02 1.76 16 32 H 0.04 1.37 6.02 -2.39 -0.01 1.35 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.07 2.86 5.92 -2.38 -0.01 2.85 16 36 H 0.06 2.19 8.09 -2.39 -0.02 2.17 16 37 H 0.27 15.48 8.29 -92.71 -0.77 14.71 16 38 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.05 2.32 6.96 -2.39 -0.02 2.30 16 40 H 0.07 2.27 7.47 -2.38 -0.02 2.25 16 41 H 0.05 1.89 6.08 -2.39 -0.01 1.87 16 Total: -1.00 -84.24 336.40 0.45 -83.79 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.27 Total: 22.04 kcal Atomic # 6 Polarization: 22.92 SS G_CDS: 6.69 Total: 29.61 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -8.44 Total: -118.37 kcal Atomic # 8 Polarization: -60.88 SS G_CDS: -0.10 Total: -60.98 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -84.24 0.45 -83.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490974677.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.738 kcal (2) G-P(sol) polarization free energy of solvation -84.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds