Wall clock time and date at job start Fri Apr 10 2020 17:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46510 * 2 1 4 4 C 1.52993 * 109.47408 * 119.99918 * 2 1 3 5 5 N 1.46505 * 109.46974 * 64.99868 * 4 2 1 6 6 C 1.46760 * 124.34579 * 90.00081 * 5 4 2 7 7 C 1.54476 * 105.47520 * 162.98403 * 6 5 4 8 8 H 1.08998 * 110.97386 * 267.29787 * 7 6 5 9 9 C 1.50701 * 110.97465 * 143.56922 * 7 6 5 10 10 O 1.21294 * 119.99277 * 0.02562 * 9 7 6 11 11 N 1.34774 * 120.00391 * 180.02562 * 9 7 6 12 12 C 1.37094 * 119.99981 * 180.02562 * 11 9 7 13 13 H 1.08002 * 120.00383 * 9.37002 * 12 11 9 14 14 C 1.38952 * 120.00007 * 189.37194 * 12 11 9 15 15 N 1.31414 * 120.00023 * 24.95557 * 14 12 11 16 16 Si 1.86798 * 120.00043 * 204.95114 * 14 12 11 17 17 H 1.48502 * 109.46799 * 89.99936 * 16 14 12 18 18 H 1.48495 * 109.47175 * 210.00032 * 16 14 12 19 19 H 1.48497 * 109.47256 * 330.00477 * 16 14 12 20 20 C 1.46495 * 119.99833 * 0.02562 * 11 9 7 21 21 C 1.47202 * 109.47255 * 89.90679 * 20 11 9 22 22 N 7.54925 * 65.33266 * 165.45484 * 2 1 3 23 23 C 1.54630 * 101.76248 * 25.41453 * 7 6 5 24 24 C 1.34411 * 124.35330 * 269.70318 * 5 4 2 25 25 O 1.21285 * 124.94191 * 0.38376 * 24 5 4 26 26 H 1.08997 * 109.47536 * 59.99842 * 1 2 3 27 27 H 1.09000 * 109.46741 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46983 * 299.99581 * 1 2 3 29 29 H 1.09001 * 109.46983 * 240.00419 * 2 1 3 30 30 H 1.09001 * 109.46799 * 180.02562 * 3 2 1 31 31 H 1.08996 * 109.47447 * 299.99725 * 3 2 1 32 32 H 1.09001 * 109.47156 * 60.00525 * 3 2 1 33 33 H 1.08994 * 109.47285 * 185.00434 * 4 2 1 34 34 H 1.09004 * 109.47104 * 305.00754 * 4 2 1 35 35 H 1.09004 * 110.24547 * 281.98564 * 6 5 4 36 36 H 1.09001 * 110.24981 * 43.89743 * 6 5 4 37 37 H 0.96992 * 119.99877 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.46866 * 209.90309 * 20 11 9 39 39 H 1.09000 * 109.47123 * 329.90450 * 20 11 9 40 40 H 1.09005 * 110.48744 * 93.88372 * 23 7 6 41 41 H 1.09002 * 110.48584 * 216.52226 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1905 6 6 2.4688 -3.1911 0.5843 7 6 1.8956 -4.5176 1.1303 8 1 2.4266 -4.8314 2.0290 9 6 1.9366 -5.5963 0.0787 10 8 2.3820 -5.3526 -1.0229 11 7 1.4785 -6.8317 0.3623 12 6 1.5164 -7.8131 -0.5942 13 1 2.0471 -7.6451 -1.5197 14 6 0.8718 -9.0241 -0.3730 15 7 -0.1425 -9.0860 0.4603 16 14 1.4470 -10.5640 -1.2601 17 1 2.4808 -11.2489 -0.4431 18 1 0.2939 -11.4767 -1.4659 19 1 2.0239 -10.1906 -2.5765 20 6 0.9402 -7.1258 1.6927 21 6 -0.5059 -6.8514 1.7085 22 7 -1.6206 -6.6405 1.7229 23 6 0.4381 -4.1195 1.4592 24 6 0.5063 -2.6260 1.6901 25 8 -0.3500 -1.9689 2.2431 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1263 -0.6442 1.2951 34 1 1.6054 -0.2617 2.1369 35 1 2.3801 -3.1605 -0.5017 36 1 3.5119 -3.0793 0.8802 37 1 -0.5921 -9.9313 0.6150 38 1 1.1135 -8.1752 1.9309 39 1 1.4372 -6.4983 2.4326 40 1 -0.2189 -4.3502 0.6206 41 1 0.0985 -4.6272 2.3620 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522195657.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:30 Heat of formation + Delta-G solvation = -51.459380 kcal Electronic energy + Delta-G solvation = -24342.511354 eV Core-core repulsion = 20836.272125 eV Total energy + Delta-G solvation = -3506.239229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.93514 -40.31637 -37.81555 -37.47645 -36.71528 -36.07050 -33.89200 -32.64948 -29.21806 -28.76202 -28.06642 -27.59378 -26.50906 -23.85023 -21.50316 -20.88979 -20.13848 -19.78296 -18.54487 -18.08793 -17.69226 -17.18148 -16.45511 -16.22443 -15.92153 -15.68058 -15.38981 -15.03470 -14.79132 -14.71793 -14.55790 -14.11377 -13.83469 -13.70524 -13.56547 -13.36339 -13.12147 -13.05010 -12.90050 -12.87892 -12.51127 -12.43421 -12.25005 -12.12632 -12.07089 -11.97230 -11.85862 -11.62637 -11.09703 -10.98747 -10.39430 -9.98566 -9.66740 -8.42160 -5.91111 1.39114 1.46962 1.51130 1.60430 1.79561 1.93363 2.11952 2.31332 2.37760 2.93372 3.01023 3.33435 3.46994 3.65124 3.85500 3.88107 3.92558 3.98525 4.13902 4.16839 4.49415 4.50444 4.58237 4.60539 4.62838 4.73539 4.81482 4.81827 4.94329 4.95231 5.03624 5.04753 5.19499 5.35135 5.39295 5.51042 5.62070 5.98897 6.05114 6.38253 7.06400 7.09826 7.12194 7.36043 7.89883 8.60805 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.026066 B = 0.004319 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.920909 B = 6481.151935 C = 7096.862834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.114 4.114 3 C -0.136 4.136 4 C 0.126 3.874 5 N -0.607 5.607 6 C 0.125 3.875 7 C -0.106 4.106 8 H 0.153 0.847 9 C 0.460 3.540 10 O -0.607 6.607 11 N -0.448 5.448 12 C -0.343 4.343 13 H 0.088 0.912 14 C 0.009 3.991 15 N -0.887 5.887 16 Si 0.983 3.017 17 H -0.259 1.259 18 H -0.290 1.290 19 H -0.277 1.277 20 C 0.217 3.783 21 C 0.259 3.741 22 N -0.509 5.509 23 C -0.140 4.140 24 C 0.521 3.479 25 O -0.566 6.566 26 H 0.057 0.943 27 H 0.021 0.979 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.275 0.725 38 H 0.126 0.874 39 H 0.139 0.861 40 H 0.072 0.928 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.074 11.481 5.156 16.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.133 4.133 3 C -0.194 4.194 4 C 0.005 3.995 5 N -0.339 5.339 6 C 0.002 3.998 7 C -0.127 4.127 8 H 0.170 0.830 9 C 0.249 3.751 10 O -0.493 6.493 11 N -0.166 5.166 12 C -0.470 4.470 13 H 0.106 0.894 14 C -0.194 4.194 15 N -0.526 5.526 16 Si 0.808 3.192 17 H -0.184 1.184 18 H -0.216 1.216 19 H -0.202 1.202 20 C 0.090 3.910 21 C -0.058 4.058 22 N -0.190 5.190 23 C -0.181 4.181 24 C 0.309 3.691 25 O -0.446 6.446 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.139 0.861 37 H 0.085 0.915 38 H 0.144 0.856 39 H 0.157 0.843 40 H 0.090 0.910 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.121 12.168 4.984 15.454 hybrid contribution -0.288 -1.361 -0.860 1.635 sum 7.833 10.807 4.124 13.970 Atomic orbital electron populations 1.21767 0.96481 1.00015 1.01392 1.21549 0.95169 0.98050 0.98560 1.21713 1.01910 0.93425 1.02369 1.21738 1.01899 0.77582 0.98233 1.48373 1.19732 1.09069 1.56744 1.22002 0.96322 0.83022 0.98454 1.22173 0.96044 0.94352 1.00154 0.82959 1.20256 0.83212 0.82726 0.88885 1.90534 1.52033 1.80922 1.25789 1.43785 1.52760 1.09057 1.11029 1.19655 1.33651 0.92881 1.00827 0.89439 1.25808 0.93737 1.01493 0.98328 1.69964 1.16997 1.27646 1.37966 0.85070 0.77846 0.77592 0.78668 1.18359 1.21621 1.20216 1.19232 0.80289 1.05657 0.85826 1.29599 0.95869 0.89189 0.91142 1.80893 1.14238 1.13877 1.10010 1.22337 0.97690 0.94212 1.03852 1.20762 0.81417 0.89917 0.76995 1.90674 1.42445 1.66208 1.45268 0.92391 0.96015 0.93076 0.91350 0.90697 0.92200 0.92172 0.86787 0.90492 0.91238 0.86145 0.91453 0.85592 0.84350 0.90980 0.87460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 8.34 71.98 0.60 -3.02 16 2 C -0.11 -2.31 3.13 -10.79 -0.03 -2.35 16 3 C -0.14 -1.95 9.19 71.98 0.66 -1.29 16 4 C 0.13 2.51 5.38 86.38 0.47 2.97 16 5 N -0.61 -15.52 2.78 -818.02 -2.27 -17.79 16 6 C 0.12 3.09 6.71 86.83 0.58 3.68 16 7 C -0.11 -2.97 2.54 -10.48 -0.03 -3.00 16 8 H 0.15 2.94 7.25 -2.39 -0.02 2.92 16 9 C 0.46 18.23 6.91 87.66 0.61 18.84 16 10 O -0.61 -28.70 15.10 -3.07 -0.05 -28.74 16 11 N -0.45 -18.95 2.58 -645.42 -1.67 -20.62 16 12 C -0.34 -16.79 9.42 84.04 0.79 -16.00 16 13 H 0.09 4.66 7.32 -2.91 -0.02 4.64 16 14 C 0.01 0.42 4.89 84.93 0.41 0.84 16 15 N -0.89 -42.37 9.18 21.66 0.20 -42.17 16 16 Si 0.98 38.39 29.62 68.60 2.03 40.43 16 17 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 18 H -0.29 -11.49 7.11 99.48 0.71 -10.79 16 19 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 20 C 0.22 7.64 4.76 84.58 0.40 8.04 16 21 C 0.26 10.81 10.42 89.46 0.93 11.74 16 22 N -0.51 -23.72 18.53 19.99 0.37 -23.35 16 23 C -0.14 -4.55 4.47 30.59 0.14 -4.42 16 24 C 0.52 16.96 6.62 87.90 0.58 17.54 16 25 O -0.57 -22.02 16.45 -3.05 -0.05 -22.07 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 27 H 0.02 0.69 6.15 -2.39 -0.01 0.68 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.64 7.92 -2.39 -0.02 1.62 16 35 H 0.07 2.11 6.96 -2.38 -0.02 2.09 16 36 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.28 12.76 8.31 -92.71 -0.77 11.99 16 38 H 0.13 4.61 6.36 -2.39 -0.02 4.59 16 39 H 0.14 3.29 6.12 -2.39 -0.01 3.27 16 40 H 0.07 2.87 7.71 -2.38 -0.02 2.85 16 41 H 0.11 3.34 6.40 -2.39 -0.02 3.33 16 Total: -1.00 -68.28 333.96 5.72 -62.56 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 1.04 Total: 18.19 kcal Atomic # 6 Polarization: 27.46 SS G_CDS: 6.11 Total: 33.57 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -3.37 Total: -103.93 kcal Atomic # 8 Polarization: -50.72 SS G_CDS: -0.10 Total: -50.82 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.43 kcal Total: -68.28 5.72 -62.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522195657.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.100 kcal (2) G-P(sol) polarization free energy of solvation -68.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds