Wall clock time and date at job start Fri Apr 10 2020 17:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42892 * 109.47754 * 2 1 4 4 C 1.35665 * 117.00596 * 180.02562 * 3 2 1 5 5 C 1.38813 * 119.64772 * 180.02562 * 4 3 2 6 6 C 1.38553 * 119.26425 * 179.97438 * 5 4 3 7 7 C 1.38552 * 118.55488 * 0.02562 * 6 5 4 8 8 C 1.38884 * 119.22834 * 359.97438 * 7 6 5 9 9 N 1.39392 * 119.65861 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99601 * 174.84196 * 9 8 7 11 11 O 1.21579 * 120.00331 * 5.07733 * 10 9 8 12 12 N 1.34780 * 119.99645 * 185.08478 * 10 9 8 13 13 C 1.46500 * 120.00321 * 359.97438 * 12 10 9 14 14 C 1.46500 * 119.99659 * 179.97438 * 12 10 9 15 15 H 1.08991 * 109.47453 * 359.97438 * 14 12 10 16 16 C 1.53005 * 109.47246 * 239.99550 * 14 12 10 17 17 C 1.50698 * 109.46944 * 119.99923 * 14 12 10 18 18 H 1.07998 * 120.00418 * 359.97438 * 17 14 12 19 19 C 1.37880 * 120.00353 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99915 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00473 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47181 * 120.00196 * 21 19 17 24 24 H 1.48493 * 109.47339 * 240.00325 * 21 19 17 25 25 N 1.32301 * 119.64102 * 359.73038 * 4 3 2 26 26 H 1.09002 * 109.46779 * 299.99897 * 1 2 3 27 27 H 1.09003 * 109.47100 * 59.99201 * 1 2 3 28 28 H 1.08999 * 109.47549 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46779 * 240.00103 * 2 1 3 30 30 H 1.09001 * 109.47408 * 120.00371 * 2 1 3 31 31 H 1.08004 * 120.36723 * 359.95711 * 5 4 3 32 32 H 1.07998 * 120.72339 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.38175 * 179.97438 * 7 6 5 34 34 H 0.96996 * 120.00272 * 354.83906 * 9 8 7 35 35 H 1.09001 * 109.46918 * 89.99742 * 13 12 10 36 36 H 1.08994 * 109.47518 * 210.00237 * 13 12 10 37 37 H 1.09002 * 109.47030 * 330.00318 * 13 12 10 38 38 H 1.08993 * 109.47181 * 180.02562 * 16 14 12 39 39 H 1.09001 * 109.47285 * 300.00334 * 16 14 12 40 40 H 1.09004 * 109.46607 * 60.00219 * 16 14 12 41 41 H 0.96995 * 120.00433 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.3514 1.5249 -0.0005 5 6 3.8741 2.8109 0.0000 6 6 5.2488 2.9832 0.0000 7 6 6.0573 1.8580 -0.0011 8 6 5.4688 0.6001 -0.0016 9 7 6.2737 -0.5380 -0.0021 10 6 5.7137 -1.7594 0.1023 11 8 4.5034 -1.8752 0.1041 12 7 6.4953 -2.8526 0.2051 13 6 7.9537 -2.7132 0.2026 14 6 5.8866 -4.1802 0.3192 15 1 4.8010 -4.0847 0.3037 16 6 6.3222 -4.8297 1.6342 17 6 6.3323 -5.0382 -0.8367 18 1 7.0018 -4.6349 -1.5820 19 6 5.8856 -6.3383 -0.9428 20 7 5.0700 -6.8295 -0.0355 21 14 6.4376 -7.4017 -2.3760 22 1 7.3471 -6.6195 -3.2513 23 1 7.1540 -8.5955 -1.8595 24 1 5.2510 -7.8356 -3.1562 25 7 4.1507 0.4707 0.0044 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.2164 3.6676 0.0001 32 1 5.6808 3.9730 0.0008 33 1 7.1327 1.9581 -0.0016 34 1 7.2368 -0.4509 -0.0777 35 1 8.3084 -2.5874 1.2256 36 1 8.4034 -3.6065 -0.2306 37 1 8.2344 -1.8418 -0.3890 38 1 5.8697 -5.8177 1.7189 39 1 7.4079 -4.9253 1.6501 40 1 5.9998 -4.2091 2.4703 41 1 4.7553 -7.7439 -0.1103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097143242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:20 Heat of formation + Delta-G solvation = -7.736740 kcal Electronic energy + Delta-G solvation = -23853.355638 eV Core-core repulsion = 20349.012365 eV Total energy + Delta-G solvation = -3504.343273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73634 -39.39008 -37.79446 -35.49602 -34.33736 -32.81715 -32.10885 -31.46844 -29.64752 -28.55899 -26.16952 -25.22694 -24.17817 -23.11182 -22.35203 -21.11049 -19.21528 -18.67633 -17.19749 -16.81215 -16.32120 -16.06684 -15.93170 -15.37275 -14.98295 -14.95241 -14.12936 -13.80347 -13.70602 -13.30693 -13.08119 -12.84182 -12.53813 -12.41926 -12.17641 -12.11981 -11.68959 -11.53489 -11.27946 -11.07457 -10.88242 -10.74020 -10.65177 -10.27579 -10.18011 -10.16637 -9.80114 -9.29525 -9.17189 -8.77446 -8.42827 -7.90949 -7.53502 -6.08033 -4.15781 1.34498 1.46075 2.92819 3.25178 3.26304 3.33595 3.36469 3.71726 4.20371 4.25687 4.41827 4.70944 5.04554 5.09419 5.23386 5.23869 5.25567 5.32083 5.40783 5.57015 5.64826 5.90270 5.94630 5.98400 6.06846 6.16856 6.25275 6.26282 6.34311 6.65090 6.79647 6.86663 6.96222 7.09613 7.46203 7.47645 7.65672 7.75095 8.02302 8.17126 8.25623 8.65793 8.86017 9.26966 9.51592 10.97269 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.004335 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.997154 B = 6456.942224 C = 7448.504539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 O -0.311 6.311 4 C 0.355 3.645 5 C -0.240 4.240 6 C -0.014 4.014 7 C -0.261 4.261 8 C 0.432 3.568 9 N -0.674 5.674 10 C 0.686 3.314 11 O -0.534 6.534 12 N -0.606 5.606 13 C 0.084 3.916 14 C 0.274 3.726 15 H 0.065 0.935 16 C -0.146 4.146 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.887 5.887 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.283 1.283 25 N -0.526 5.526 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.410 0.590 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.011 0.989 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.750 16.767 1.215 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.007 4.007 3 O -0.218 6.218 4 C 0.175 3.825 5 C -0.262 4.262 6 C -0.040 4.040 7 C -0.286 4.286 8 C 0.198 3.802 9 N -0.324 5.324 10 C 0.387 3.613 11 O -0.406 6.406 12 N -0.342 5.342 13 C -0.060 4.060 14 C 0.173 3.827 15 H 0.082 0.918 16 C -0.205 4.205 17 C -0.564 4.564 18 H 0.078 0.922 19 C -0.138 4.138 20 N -0.525 5.525 21 Si 0.726 3.274 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.209 1.209 25 N -0.255 5.255 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.154 0.846 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.248 0.752 35 H 0.062 0.938 36 H 0.104 0.896 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.048 0.952 40 H 0.030 0.970 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.184 15.653 1.294 15.708 hybrid contribution 1.409 -0.099 -0.824 1.636 sum 1.593 15.554 0.470 15.642 Atomic orbital electron populations 1.21817 0.93533 1.02858 1.02542 1.22614 0.93876 0.80306 1.03925 1.86169 1.16791 1.31430 1.87390 1.19624 0.84116 0.89075 0.89725 1.20847 0.95739 0.95474 1.14174 1.21020 0.92037 0.98450 0.92473 1.21195 1.01041 0.91108 1.15226 1.17800 0.86811 0.85423 0.90151 1.43256 1.09827 1.04180 1.75151 1.16101 0.86080 0.79823 0.79299 1.90956 1.11451 1.83733 1.54429 1.47668 1.05118 1.07014 1.74410 1.21544 0.82432 1.02107 0.99931 1.18876 0.95427 0.74763 0.93596 0.91754 1.22096 0.99268 1.02976 0.96112 1.21367 1.29563 0.96764 1.08728 0.92244 1.24883 0.94849 0.97696 0.96322 1.69888 1.32642 1.15839 1.34145 0.86440 0.78486 0.80182 0.82264 1.19868 1.20947 1.20920 1.67276 1.04076 1.32215 1.21967 0.92085 0.92080 0.90269 0.91052 0.90979 0.84623 0.84220 0.84827 0.75202 0.93844 0.89616 0.93739 0.88779 0.95213 0.97032 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 10.28 37.16 0.38 -1.44 16 2 C 0.07 1.09 6.03 37.16 0.22 1.31 16 3 O -0.31 -5.02 10.11 -18.70 -0.19 -5.21 16 4 C 0.36 5.86 7.48 -17.14 -0.13 5.73 16 5 C -0.24 -3.06 10.04 -39.25 -0.39 -3.45 16 6 C -0.01 -0.15 10.16 -39.35 -0.40 -0.55 16 7 C -0.26 -3.16 9.93 -39.23 -0.39 -3.55 16 8 C 0.43 7.11 7.42 -154.69 -1.15 5.96 16 9 N -0.67 -11.19 5.27 -15.83 -0.08 -11.28 16 10 C 0.69 14.79 8.24 -86.92 -0.72 14.08 16 11 O -0.53 -13.61 13.93 5.30 0.07 -13.53 16 12 N -0.61 -12.92 2.75 -181.01 -0.50 -13.42 16 13 C 0.08 1.36 9.24 59.85 0.55 1.91 16 14 C 0.27 6.97 2.64 -69.08 -0.18 6.79 16 15 H 0.06 1.91 6.90 -51.93 -0.36 1.56 16 16 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 17 C -0.53 -14.08 7.99 -34.44 -0.28 -14.36 16 18 H 0.06 1.57 7.33 -52.49 -0.38 1.19 16 19 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 20 N -0.89 -24.95 11.32 55.43 0.63 -24.33 16 21 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 N -0.53 -9.95 6.73 -12.44 -0.08 -10.03 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 30 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 32 H 0.14 0.96 8.06 -52.49 -0.42 0.53 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.41 5.17 6.39 -40.82 -0.26 4.91 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 1.48 7.02 -51.93 -0.36 1.11 16 37 H 0.04 0.56 6.29 -51.93 -0.33 0.23 16 38 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 39 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -32.92 341.76 -8.03 -40.95 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.77 Total: 4.83 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -2.23 Total: 10.95 kcal Atomic # 7 Polarization: -59.02 SS G_CDS: -0.04 Total: -59.06 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.12 Total: -18.74 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.92 -8.03 -40.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097143242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.210 kcal (2) G-P(sol) polarization free energy of solvation -32.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds