Wall clock time and date at job start Fri Apr 10 2020 17:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42892 * 109.47754 * 2 1 4 4 C 1.35665 * 117.00596 * 180.02562 * 3 2 1 5 5 C 1.38813 * 119.64772 * 180.02562 * 4 3 2 6 6 C 1.38553 * 119.26425 * 179.97438 * 5 4 3 7 7 C 1.38552 * 118.55488 * 0.02562 * 6 5 4 8 8 C 1.38884 * 119.22834 * 359.97438 * 7 6 5 9 9 N 1.39392 * 119.65861 * 180.02562 * 8 7 6 10 10 C 1.34774 * 119.99601 * 174.84196 * 9 8 7 11 11 O 1.21579 * 120.00331 * 5.07733 * 10 9 8 12 12 N 1.34780 * 119.99645 * 185.08478 * 10 9 8 13 13 C 1.46500 * 120.00321 * 359.97438 * 12 10 9 14 14 C 1.46500 * 119.99659 * 179.97438 * 12 10 9 15 15 H 1.08991 * 109.47453 * 359.97438 * 14 12 10 16 16 C 1.53005 * 109.47246 * 239.99550 * 14 12 10 17 17 C 1.50698 * 109.46944 * 119.99923 * 14 12 10 18 18 H 1.07998 * 120.00418 * 359.97438 * 17 14 12 19 19 C 1.37880 * 120.00353 * 179.97438 * 17 14 12 20 20 N 1.31517 * 119.99915 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00473 * 179.97438 * 19 17 14 22 22 H 1.48499 * 109.47126 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47181 * 120.00196 * 21 19 17 24 24 H 1.48493 * 109.47339 * 240.00325 * 21 19 17 25 25 N 1.32301 * 119.64102 * 359.73038 * 4 3 2 26 26 H 1.09002 * 109.46779 * 299.99897 * 1 2 3 27 27 H 1.09003 * 109.47100 * 59.99201 * 1 2 3 28 28 H 1.08999 * 109.47549 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46779 * 240.00103 * 2 1 3 30 30 H 1.09001 * 109.47408 * 120.00371 * 2 1 3 31 31 H 1.08004 * 120.36723 * 359.95711 * 5 4 3 32 32 H 1.07998 * 120.72339 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.38175 * 179.97438 * 7 6 5 34 34 H 0.96996 * 120.00272 * 354.83906 * 9 8 7 35 35 H 1.09001 * 109.46918 * 89.99742 * 13 12 10 36 36 H 1.08994 * 109.47518 * 210.00237 * 13 12 10 37 37 H 1.09002 * 109.47030 * 330.00318 * 13 12 10 38 38 H 1.08993 * 109.47181 * 180.02562 * 16 14 12 39 39 H 1.09001 * 109.47285 * 300.00334 * 16 14 12 40 40 H 1.09004 * 109.46607 * 60.00219 * 16 14 12 41 41 H 0.96995 * 120.00433 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3471 0.0000 4 6 3.3514 1.5249 -0.0005 5 6 3.8741 2.8109 0.0000 6 6 5.2488 2.9832 0.0000 7 6 6.0573 1.8580 -0.0011 8 6 5.4688 0.6001 -0.0016 9 7 6.2737 -0.5380 -0.0021 10 6 5.7137 -1.7594 0.1023 11 8 4.5034 -1.8752 0.1041 12 7 6.4953 -2.8526 0.2051 13 6 7.9537 -2.7132 0.2026 14 6 5.8866 -4.1802 0.3192 15 1 4.8010 -4.0847 0.3037 16 6 6.3222 -4.8297 1.6342 17 6 6.3323 -5.0382 -0.8367 18 1 7.0018 -4.6349 -1.5820 19 6 5.8856 -6.3383 -0.9428 20 7 5.0700 -6.8295 -0.0355 21 14 6.4376 -7.4017 -2.3760 22 1 7.3471 -6.6195 -3.2513 23 1 7.1540 -8.5955 -1.8595 24 1 5.2510 -7.8356 -3.1562 25 7 4.1507 0.4707 0.0044 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.2164 3.6676 0.0001 32 1 5.6808 3.9730 0.0008 33 1 7.1327 1.9581 -0.0016 34 1 7.2368 -0.4509 -0.0777 35 1 8.3084 -2.5874 1.2256 36 1 8.4034 -3.6065 -0.2306 37 1 8.2344 -1.8418 -0.3890 38 1 5.8697 -5.8177 1.7189 39 1 7.4079 -4.9253 1.6501 40 1 5.9998 -4.2091 2.4703 41 1 4.7553 -7.7439 -0.1103 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097143242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:37:19 Heat of formation + Delta-G solvation = -30.082648 kcal Electronic energy + Delta-G solvation = -23854.324629 eV Core-core repulsion = 20349.012365 eV Total energy + Delta-G solvation = -3505.312264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.98697 -40.83027 -39.04383 -37.20568 -35.83356 -34.67702 -33.21612 -32.69953 -31.34719 -29.85564 -27.62168 -27.30408 -25.37895 -24.30859 -23.66385 -22.65583 -20.77138 -19.99093 -18.74979 -18.30284 -18.08559 -17.33382 -16.98895 -16.84343 -16.53690 -16.40999 -15.87316 -15.11245 -14.98097 -14.76051 -14.39779 -14.19701 -14.08129 -13.55969 -13.42992 -13.40180 -13.16647 -13.00371 -12.89446 -12.72529 -12.61774 -12.45342 -12.21477 -12.10913 -12.00375 -11.35597 -11.31726 -11.15934 -10.55048 -10.54324 -10.13271 -9.37928 -8.92946 -8.14363 -6.30801 0.22442 0.46829 1.40446 1.41924 1.52441 1.60054 2.10985 2.22243 2.41570 2.91260 2.98280 3.13730 3.54186 4.03853 4.04897 4.10248 4.19370 4.32485 4.38919 4.46908 4.51165 4.67976 4.71628 4.86627 4.88518 4.90661 4.95797 4.99505 5.06396 5.13100 5.28199 5.33371 5.40672 5.51370 5.65522 5.69925 5.88990 6.13023 6.17037 6.31474 6.77206 6.84847 7.24622 7.37915 7.71659 8.90174 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.017323 B = 0.004335 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.997154 B = 6456.942224 C = 7448.504539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 O -0.315 6.315 4 C 0.313 3.687 5 C -0.226 4.226 6 C -0.002 4.002 7 C -0.235 4.235 8 C 0.389 3.611 9 N -0.659 5.659 10 C 0.680 3.320 11 O -0.588 6.588 12 N -0.614 5.614 13 C 0.079 3.921 14 C 0.280 3.720 15 H 0.007 0.993 16 C -0.130 4.130 17 C -0.536 4.536 18 H 0.061 0.939 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.966 3.034 22 H -0.265 1.265 23 H -0.273 1.273 24 H -0.287 1.287 25 N -0.576 5.576 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.163 0.837 32 H 0.195 0.805 33 H 0.177 0.823 34 H 0.429 0.571 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.015 0.985 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 19.594 0.609 20.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.002 3.998 3 O -0.223 6.223 4 C 0.134 3.866 5 C -0.248 4.248 6 C -0.027 4.027 7 C -0.259 4.259 8 C 0.157 3.843 9 N -0.311 5.311 10 C 0.381 3.619 11 O -0.463 6.463 12 N -0.349 5.349 13 C -0.063 4.063 14 C 0.178 3.822 15 H 0.025 0.975 16 C -0.188 4.188 17 C -0.575 4.575 18 H 0.080 0.920 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.791 3.209 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.214 1.214 25 N -0.305 5.305 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.180 0.820 32 H 0.212 0.788 33 H 0.194 0.806 34 H 0.271 0.729 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.034 0.966 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.712 18.544 0.689 18.754 hybrid contribution 0.671 -0.817 -0.616 1.224 sum 3.384 17.726 0.073 18.046 Atomic orbital electron populations 1.21785 0.90252 1.03739 1.03907 1.22421 0.96310 0.80398 1.00689 1.86152 1.17482 1.30669 1.87968 1.20156 0.83925 0.90245 0.92278 1.21321 0.97435 0.94390 1.11680 1.21680 0.90766 1.00325 0.89954 1.21679 1.03315 0.89196 1.11661 1.18307 0.86413 0.86656 0.92888 1.42843 1.10714 1.02615 1.74929 1.16331 0.85505 0.81158 0.78889 1.90927 1.13933 1.84855 1.56600 1.47523 1.07285 1.05600 1.74538 1.21815 0.78896 1.03441 1.02157 1.18424 0.92575 0.77023 0.94212 0.97539 1.21866 1.00105 1.01374 0.95493 1.21608 1.29530 0.97178 1.09165 0.92038 1.25732 0.94841 0.99057 0.98831 1.70034 1.33595 1.16187 1.35845 0.85393 0.77925 0.78580 0.79003 1.18888 1.19855 1.21354 1.67039 1.06014 1.34494 1.22982 0.90627 0.90647 0.89650 0.94362 0.94268 0.81978 0.78836 0.80598 0.72920 0.91535 0.90646 0.89750 0.91342 0.93243 0.96559 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 10.28 71.98 0.74 -2.78 16 2 C 0.08 2.73 6.03 71.98 0.43 3.17 16 3 O -0.31 -10.64 10.11 -89.82 -0.91 -11.55 16 4 C 0.31 10.50 7.48 84.76 0.63 11.13 16 5 C -0.23 -5.17 10.04 22.48 0.23 -4.95 16 6 C 0.00 -0.04 10.16 22.42 0.23 0.19 16 7 C -0.23 -4.73 9.93 22.50 0.22 -4.51 16 8 C 0.39 12.52 7.42 132.86 0.99 13.50 16 9 N -0.66 -21.44 5.27 -322.27 -1.70 -23.13 16 10 C 0.68 30.39 8.24 179.05 1.48 31.86 16 11 O -0.59 -32.33 13.93 -3.96 -0.06 -32.38 16 12 N -0.61 -26.64 2.75 -844.86 -2.33 -28.96 16 13 C 0.08 2.42 9.24 127.77 1.18 3.60 16 14 C 0.28 14.92 2.64 44.25 0.12 15.03 16 15 H 0.01 0.43 6.90 -2.39 -0.02 0.41 16 16 C -0.13 -6.38 8.97 71.98 0.65 -5.73 16 17 C -0.54 -29.41 7.99 25.60 0.20 -29.21 16 18 H 0.06 3.27 7.33 -2.91 -0.02 3.25 16 19 C 0.01 0.82 5.30 84.65 0.45 1.27 16 20 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 21 Si 0.97 43.37 29.54 68.60 2.03 45.40 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 N -0.58 -22.67 6.73 -306.13 -2.06 -24.73 16 26 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.67 8.14 -2.39 -0.02 1.66 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.55 8.11 -2.39 -0.02 1.53 16 30 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 31 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 32 H 0.19 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.43 9.71 6.39 -92.71 -0.59 9.12 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.48 7.02 -2.39 -0.02 2.46 16 37 H 0.08 1.86 6.29 -2.39 -0.02 1.84 16 38 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 39 H 0.05 2.17 7.67 -2.39 -0.02 2.16 16 40 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -79.80 341.76 3.21 -76.59 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.45 Total: 19.42 kcal Atomic # 6 Polarization: 25.04 SS G_CDS: 7.54 Total: 32.58 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -5.84 Total: -130.05 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -0.96 Total: -43.93 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -79.80 3.21 -76.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097143242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.504 kcal (2) G-P(sol) polarization free energy of solvation -79.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds