Wall clock time and date at job start Fri Apr 10 2020 17:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.46525 * 2 1 4 4 C 1.38351 * 120.34540 * 269.97368 * 3 2 1 5 5 N 1.31933 * 121.07487 * 180.02562 * 4 3 2 6 6 C 1.31694 * 121.87963 * 359.97438 * 5 4 3 7 7 C 1.39523 * 120.56847 * 0.02562 * 6 5 4 8 8 C 1.47835 * 120.55686 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99731 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00383 * 0.02562 * 8 7 6 11 11 C 1.46495 * 120.00069 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47116 * 180.02562 * 11 10 8 13 13 H 1.09008 * 109.47369 * 59.99752 * 12 11 10 14 14 O 1.42902 * 109.47131 * 300.00017 * 12 11 10 15 15 C 1.52996 * 109.47395 * 180.02562 * 12 11 10 16 16 N 1.46504 * 109.47555 * 184.99982 * 15 12 11 17 17 C 1.36935 * 120.00386 * 180.02562 * 16 15 12 18 18 H 1.08003 * 119.99856 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99996 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00177 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47452 * 89.99766 * 21 19 17 23 23 H 1.48500 * 109.46977 * 209.99593 * 21 19 17 24 24 H 1.48497 * 109.47159 * 329.99402 * 21 19 17 25 25 C 1.38357 * 120.34678 * 90.00281 * 3 2 1 26 26 H 1.09000 * 109.47340 * 60.00206 * 1 2 3 27 27 H 1.09004 * 109.46720 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47467 * 299.99728 * 1 2 3 29 29 H 1.08996 * 109.47467 * 240.00272 * 2 1 3 30 30 H 1.09000 * 109.47340 * 119.99794 * 2 1 3 31 31 H 1.08000 * 119.46729 * 0.05020 * 4 3 2 32 32 H 1.07998 * 119.71045 * 179.97438 * 6 5 4 33 33 H 0.97000 * 119.99327 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47278 * 300.00096 * 11 10 8 35 35 H 1.09003 * 109.47287 * 60.00187 * 11 10 8 36 36 H 0.96704 * 114.00331 * 300.00333 * 14 12 11 37 37 H 1.08994 * 109.47046 * 304.99911 * 15 12 11 38 38 H 1.09007 * 109.47310 * 65.00013 * 15 12 11 39 39 H 0.96996 * 119.99480 * 0.02562 * 16 15 12 40 40 H 0.97005 * 120.00028 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.85586 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2656 2.0798 -1.1940 5 7 2.7057 3.3234 -1.2108 6 6 2.9417 3.9927 -0.1014 7 6 2.7314 3.3993 1.1437 8 6 2.9970 4.1507 2.3889 9 8 2.8107 3.6236 3.4682 10 7 3.4457 5.4201 2.3273 11 6 3.7084 6.1648 3.5612 12 6 4.2044 7.5697 3.2133 13 1 3.4441 8.0894 2.6300 14 8 5.4082 7.4742 2.4492 15 6 4.4793 8.3473 4.5019 16 7 4.8393 9.7285 4.1716 17 6 5.1310 10.6178 5.1711 18 1 5.0953 10.3011 6.2031 19 6 5.4716 11.9265 4.8581 20 7 5.5146 12.3126 3.6005 21 14 5.8688 13.1398 6.2217 22 1 7.3235 13.0943 6.5166 23 1 5.4941 14.5103 5.7896 24 1 5.1046 12.7796 7.4429 25 6 2.2652 2.0800 1.1940 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0843 1.5679 -2.1275 32 1 3.3020 5.0094 -0.1560 33 1 3.5940 5.8408 1.4660 34 1 2.7900 6.2381 4.1439 35 1 4.4683 5.6450 4.1446 36 1 6.1300 7.0220 2.9071 37 1 3.5856 8.3441 5.1258 38 1 5.3011 7.8769 5.0419 39 1 4.8710 10.0129 3.2448 40 1 5.7529 13.2271 3.3818 41 1 2.0922 1.5893 2.1405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699050205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:35 Heat of formation + Delta-G solvation = -51.557632 kcal Electronic energy + Delta-G solvation = -22270.132237 eV Core-core repulsion = 18763.888748 eV Total energy + Delta-G solvation = -3506.243489 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98943 -39.39181 -37.64222 -35.28009 -34.46447 -34.04104 -32.61569 -31.33747 -30.29167 -29.01807 -25.92135 -24.92484 -24.15452 -22.67188 -22.26930 -21.47795 -20.35251 -18.17819 -17.31179 -17.15454 -17.02593 -16.08900 -16.05060 -15.45810 -15.05144 -14.86855 -14.48233 -14.29772 -14.14417 -13.83366 -13.67944 -13.42892 -13.10038 -13.00429 -12.73467 -12.63447 -12.36124 -11.97980 -11.90331 -11.50832 -10.98612 -10.83295 -10.67852 -10.49245 -10.19559 -10.16423 -9.85612 -9.75936 -9.53960 -9.44438 -9.18524 -8.92501 -6.96333 -5.78038 -3.07973 0.29663 0.81381 2.61759 2.90345 3.42653 3.47635 3.49499 3.49947 3.91379 4.20772 4.37084 4.46836 4.52219 4.54628 4.62015 4.69877 4.79769 4.86778 4.93159 5.06462 5.18291 5.29401 5.41566 5.46615 5.53455 5.57517 5.64456 5.73194 5.74186 5.84180 5.90287 6.13591 6.17570 6.27415 6.47710 6.63276 7.29384 7.48291 7.66620 7.87891 7.98998 8.39945 9.51666 10.07735 10.43357 11.44244 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.043510 B = 0.002308 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.373258 B =12126.954107 C =12539.947294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 C -0.143 4.143 4 C 0.122 3.878 5 N -0.482 5.482 6 C 0.131 3.869 7 C -0.181 4.181 8 C 0.561 3.439 9 O -0.538 6.538 10 N -0.713 5.713 11 C 0.089 3.911 12 C 0.088 3.912 13 H 0.106 0.894 14 O -0.553 6.553 15 C 0.127 3.873 16 N -0.726 5.726 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.012 4.012 20 N -0.930 5.930 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.017 4.017 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.159 0.841 32 H 0.161 0.839 33 H 0.405 0.595 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.374 0.626 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.389 0.611 40 H 0.256 0.744 41 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.089 -25.143 -9.357 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.145 4.145 4 C -0.035 4.035 5 N -0.190 5.190 6 C -0.028 4.028 7 C -0.186 4.186 8 C 0.347 3.653 9 O -0.416 6.416 10 N -0.365 5.365 11 C -0.035 4.035 12 C 0.028 3.972 13 H 0.124 0.876 14 O -0.357 6.357 15 C -0.001 4.001 16 N -0.371 5.371 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.043 4.043 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.177 0.823 32 H 0.178 0.822 33 H 0.241 0.759 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.221 0.779 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.223 0.777 40 H 0.066 0.934 41 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.409 -24.672 -9.653 27.795 hybrid contribution 0.501 0.414 1.314 1.466 sum -7.907 -24.258 -8.339 26.842 Atomic orbital electron populations 1.21779 0.94289 1.02156 1.02455 1.20495 0.96453 0.91269 1.03581 1.20939 1.01482 0.98338 0.93747 1.22915 0.92628 0.90290 0.97696 1.67732 1.11878 1.08455 1.30917 1.23051 0.93359 0.99587 0.86779 1.21029 1.06167 0.96534 0.94854 1.18030 0.77349 0.81619 0.88350 1.90784 1.52379 1.68814 1.29634 1.45832 1.66665 1.13255 1.10742 1.22167 1.02218 0.92827 0.86277 1.22420 0.87612 0.92279 0.94870 0.87600 1.86581 1.22722 1.81660 1.44783 1.21195 0.98020 0.87627 0.93290 1.42234 1.83029 1.04608 1.07197 1.19212 1.39165 0.90751 0.88422 0.91190 1.24768 1.02415 0.97430 0.96270 1.69676 1.54710 1.17619 1.15771 0.86171 0.78080 0.80798 0.81001 1.21674 1.21721 1.20743 1.21624 0.91341 0.92311 0.99018 0.92401 0.91956 0.92379 0.90349 0.90455 0.82345 0.82156 0.75855 0.90115 0.90748 0.77914 0.95328 0.95864 0.77709 0.93446 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.08 -0.41 6.09 -27.88 -0.17 -0.58 16 3 C -0.14 -1.09 5.15 -104.53 -0.54 -1.63 16 4 C 0.12 0.98 10.85 -17.47 -0.19 0.79 16 5 N -0.48 -4.94 10.35 -12.91 -0.13 -5.07 16 6 C 0.13 1.29 10.71 -17.13 -0.18 1.11 16 7 C -0.18 -1.93 5.89 -104.82 -0.62 -2.54 16 8 C 0.56 7.09 7.78 -12.33 -0.10 7.00 16 9 O -0.54 -8.52 16.42 5.32 0.09 -8.43 16 10 N -0.71 -8.15 5.40 -61.26 -0.33 -8.48 16 11 C 0.09 1.13 5.34 -4.05 -0.02 1.10 16 12 C 0.09 1.30 3.09 -26.74 -0.08 1.22 16 13 H 0.11 1.62 8.14 -51.92 -0.42 1.20 16 14 O -0.55 -8.38 13.03 -35.23 -0.46 -8.84 16 15 C 0.13 2.42 5.90 -4.04 -0.02 2.39 16 16 N -0.73 -18.19 5.55 -59.91 -0.33 -18.53 16 17 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 21 Si 0.91 22.41 29.55 -169.99 -5.02 17.39 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.02 -0.16 9.39 -38.87 -0.37 -0.52 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 31 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.16 1.30 6.42 -52.49 -0.34 0.96 16 33 H 0.41 3.99 6.41 -40.82 -0.26 3.73 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.37 4.68 9.05 45.56 0.41 5.10 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.39 10.42 7.67 -40.82 -0.31 10.11 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.15 1.34 7.74 -52.49 -0.41 0.94 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -34.32 353.05 -7.41 -41.73 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.10 Total: 11.90 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -2.17 Total: 0.54 kcal Atomic # 7 Polarization: -59.54 SS G_CDS: -0.07 Total: -59.62 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.37 Total: -17.27 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.32 -7.41 -41.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699050205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.825 kcal (2) G-P(sol) polarization free energy of solvation -34.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds