Wall clock time and date at job start Fri Apr 10 2020 17:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50707 * 109.46525 * 2 1 4 4 C 1.38351 * 120.34540 * 269.97368 * 3 2 1 5 5 N 1.31933 * 121.07487 * 180.02562 * 4 3 2 6 6 C 1.31694 * 121.87963 * 359.97438 * 5 4 3 7 7 C 1.39523 * 120.56847 * 0.02562 * 6 5 4 8 8 C 1.47835 * 120.55686 * 179.97438 * 7 6 5 9 9 O 1.21553 * 119.99731 * 180.02562 * 8 7 6 10 10 N 1.34780 * 120.00383 * 0.02562 * 8 7 6 11 11 C 1.46495 * 120.00069 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47116 * 180.02562 * 11 10 8 13 13 H 1.09008 * 109.47369 * 59.99752 * 12 11 10 14 14 O 1.42902 * 109.47131 * 300.00017 * 12 11 10 15 15 C 1.52996 * 109.47395 * 180.02562 * 12 11 10 16 16 N 1.46504 * 109.47555 * 184.99982 * 15 12 11 17 17 C 1.36935 * 120.00386 * 180.02562 * 16 15 12 18 18 H 1.08003 * 119.99856 * 359.97438 * 17 16 15 19 19 C 1.38804 * 119.99996 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00177 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99799 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47452 * 89.99766 * 21 19 17 23 23 H 1.48500 * 109.46977 * 209.99593 * 21 19 17 24 24 H 1.48497 * 109.47159 * 329.99402 * 21 19 17 25 25 C 1.38357 * 120.34678 * 90.00281 * 3 2 1 26 26 H 1.09000 * 109.47340 * 60.00206 * 1 2 3 27 27 H 1.09004 * 109.46720 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47467 * 299.99728 * 1 2 3 29 29 H 1.08996 * 109.47467 * 240.00272 * 2 1 3 30 30 H 1.09000 * 109.47340 * 119.99794 * 2 1 3 31 31 H 1.08000 * 119.46729 * 0.05020 * 4 3 2 32 32 H 1.07998 * 119.71045 * 179.97438 * 6 5 4 33 33 H 0.97000 * 119.99327 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.47278 * 300.00096 * 11 10 8 35 35 H 1.09003 * 109.47287 * 60.00187 * 11 10 8 36 36 H 0.96704 * 114.00331 * 300.00333 * 14 12 11 37 37 H 1.08994 * 109.47046 * 304.99911 * 15 12 11 38 38 H 1.09007 * 109.47310 * 65.00013 * 15 12 11 39 39 H 0.96996 * 119.99480 * 0.02562 * 16 15 12 40 40 H 0.97005 * 120.00028 * 180.02562 * 20 19 17 41 41 H 1.08002 * 120.85586 * 0.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2656 2.0798 -1.1940 5 7 2.7057 3.3234 -1.2108 6 6 2.9417 3.9927 -0.1014 7 6 2.7314 3.3993 1.1437 8 6 2.9970 4.1507 2.3889 9 8 2.8107 3.6236 3.4682 10 7 3.4457 5.4201 2.3273 11 6 3.7084 6.1648 3.5612 12 6 4.2044 7.5697 3.2133 13 1 3.4441 8.0894 2.6300 14 8 5.4082 7.4742 2.4492 15 6 4.4793 8.3473 4.5019 16 7 4.8393 9.7285 4.1716 17 6 5.1310 10.6178 5.1711 18 1 5.0953 10.3011 6.2031 19 6 5.4716 11.9265 4.8581 20 7 5.5146 12.3126 3.6005 21 14 5.8688 13.1398 6.2217 22 1 7.3235 13.0943 6.5166 23 1 5.4941 14.5103 5.7896 24 1 5.1046 12.7796 7.4429 25 6 2.2652 2.0800 1.1940 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.0843 1.5679 -2.1275 32 1 3.3020 5.0094 -0.1560 33 1 3.5940 5.8408 1.4660 34 1 2.7900 6.2381 4.1439 35 1 4.4683 5.6450 4.1446 36 1 6.1300 7.0220 2.9071 37 1 3.5856 8.3441 5.1258 38 1 5.3011 7.8769 5.0419 39 1 4.8710 10.0129 3.2448 40 1 5.7529 13.2271 3.3818 41 1 2.0922 1.5893 2.1405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699050205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:34 Heat of formation + Delta-G solvation = -78.557504 kcal Electronic energy + Delta-G solvation = -22271.303040 eV Core-core repulsion = 18763.888748 eV Total energy + Delta-G solvation = -3507.414292 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77706 -40.33783 -38.90987 -36.14865 -35.83336 -35.28797 -33.44830 -33.13446 -31.06437 -30.27260 -27.35748 -25.69127 -25.20251 -24.08351 -23.04000 -22.78910 -21.27624 -19.31078 -18.93966 -18.12293 -17.83074 -17.23773 -17.15813 -16.44578 -16.41685 -16.06298 -15.66385 -15.39481 -14.99920 -14.88144 -14.70470 -14.50699 -14.23652 -14.14359 -13.84995 -13.63367 -13.27832 -13.15316 -12.96462 -12.75710 -12.44679 -12.16388 -11.98789 -11.89098 -11.81594 -11.47929 -11.00854 -10.93795 -10.92182 -10.49284 -10.29578 -9.99795 -9.01658 -7.95369 -5.24910 -0.44567 0.12160 1.47586 1.49324 1.57785 1.71933 1.93411 2.55671 2.75298 3.23671 3.35787 3.45496 3.57085 3.59294 3.75762 3.77013 3.88552 4.00368 4.07470 4.19937 4.32298 4.41409 4.48106 4.53052 4.60294 4.69391 4.82442 4.93077 4.93504 4.94536 5.11695 5.18959 5.23711 5.31637 5.37040 5.47971 5.54623 6.25769 6.35354 6.78066 6.79404 7.02149 7.32955 8.08219 8.31071 9.27788 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.043510 B = 0.002308 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.373258 B =12126.954107 C =12539.947294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.135 4.135 4 C 0.122 3.878 5 N -0.503 5.503 6 C 0.128 3.872 7 C -0.195 4.195 8 C 0.563 3.437 9 O -0.575 6.575 10 N -0.704 5.704 11 C 0.101 3.899 12 C 0.107 3.893 13 H 0.102 0.898 14 O -0.562 6.562 15 C 0.122 3.878 16 N -0.740 5.740 17 C -0.248 4.248 18 H 0.077 0.923 19 C -0.077 4.077 20 N -0.968 5.968 21 Si 0.975 3.025 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.269 1.269 25 C -0.027 4.027 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.189 0.811 32 H 0.173 0.827 33 H 0.414 0.586 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.386 0.614 37 H 0.035 0.965 38 H 0.032 0.968 39 H 0.377 0.623 40 H 0.251 0.749 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.386 -26.728 -9.679 29.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.137 4.137 4 C -0.034 4.034 5 N -0.211 5.211 6 C -0.030 4.030 7 C -0.200 4.200 8 C 0.350 3.650 9 O -0.456 6.456 10 N -0.356 5.356 11 C -0.023 4.023 12 C 0.047 3.953 13 H 0.120 0.880 14 O -0.369 6.369 15 C -0.005 4.005 16 N -0.383 5.383 17 C -0.380 4.380 18 H 0.095 0.905 19 C -0.269 4.269 20 N -0.618 5.618 21 Si 0.804 3.196 22 H -0.214 1.214 23 H -0.222 1.222 24 H -0.194 1.194 25 C -0.053 4.053 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.206 0.794 32 H 0.190 0.810 33 H 0.252 0.748 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.235 0.765 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.706 -26.293 -9.964 29.434 hybrid contribution 0.565 0.775 1.378 1.678 sum -8.141 -25.518 -8.586 28.127 Atomic orbital electron populations 1.21775 0.94050 1.02887 1.01876 1.20574 0.96500 0.89645 1.04840 1.21191 1.00292 0.99404 0.92814 1.23456 0.91204 0.89700 0.99055 1.67785 1.12763 1.09575 1.30952 1.23202 0.93239 1.00145 0.86444 1.20907 1.07899 0.97061 0.94149 1.18304 0.76524 0.81601 0.88561 1.90761 1.54173 1.69604 1.31041 1.45716 1.66154 1.12971 1.10773 1.21924 1.02172 0.91499 0.86715 1.22106 0.87558 0.92878 0.92711 0.88046 1.86561 1.23263 1.81990 1.45098 1.21410 0.98185 0.85310 0.95600 1.42423 1.83130 1.06685 1.06092 1.19642 1.37585 0.91408 0.89349 0.90521 1.25609 1.03396 0.99431 0.98476 1.69833 1.56550 1.17673 1.17761 0.85117 0.77820 0.78036 0.78624 1.21385 1.22208 1.19370 1.21770 0.91560 0.92155 0.99838 0.92276 0.90600 0.93676 0.88246 0.90082 0.79414 0.81049 0.74825 0.90197 0.90375 0.76533 0.94761 0.94985 0.79122 0.93989 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 71.98 0.71 -0.44 16 2 C -0.08 -0.61 6.09 29.85 0.18 -0.43 16 3 C -0.14 -1.83 5.15 -19.81 -0.10 -1.93 16 4 C 0.12 1.72 10.85 84.70 0.92 2.64 16 5 N -0.50 -9.57 10.35 -194.75 -2.01 -11.58 16 6 C 0.13 2.41 10.71 85.02 0.91 3.32 16 7 C -0.19 -4.07 5.89 -20.00 -0.12 -4.19 16 8 C 0.56 14.08 7.78 86.78 0.68 14.75 16 9 O -0.57 -18.25 16.42 -3.88 -0.06 -18.32 16 10 N -0.70 -15.56 5.40 -465.99 -2.52 -18.07 16 11 C 0.10 2.46 5.34 86.38 0.46 2.92 16 12 C 0.11 3.09 3.09 30.59 0.09 3.18 16 13 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 14 O -0.56 -16.52 13.03 -148.98 -1.94 -18.46 16 15 C 0.12 4.54 5.90 86.38 0.51 5.05 16 16 N -0.74 -37.07 5.55 -343.45 -1.91 -38.98 16 17 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 19 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 20 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 21 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 C -0.03 -0.49 9.39 22.73 0.21 -0.28 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 28 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.10 0.40 8.09 -2.39 -0.02 0.38 16 30 H 0.08 0.61 8.09 -2.39 -0.02 0.59 16 31 H 0.19 1.39 8.06 -2.91 -0.02 1.37 16 32 H 0.17 2.62 6.42 -2.91 -0.02 2.61 16 33 H 0.41 7.76 6.41 -92.71 -0.59 7.17 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.39 9.20 9.05 -74.05 -0.67 8.53 16 37 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.38 20.42 7.67 -92.71 -0.71 19.71 16 40 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 41 H 0.14 2.65 7.74 -2.91 -0.02 2.62 16 Total: -1.00 -73.14 353.05 -1.28 -74.42 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: -0.91 Total: 34.46 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.76 Total: 7.69 kcal Atomic # 7 Polarization: -121.81 SS G_CDS: -6.16 Total: -127.96 kcal Atomic # 8 Polarization: -34.77 SS G_CDS: -2.00 Total: -36.78 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -73.14 -1.28 -74.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699050205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.138 kcal (2) G-P(sol) polarization free energy of solvation -73.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds