Wall clock time and date at job start Fri Apr 10 2020 17:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34868 * 119.10499 * 2 1 4 4 C 1.41665 * 119.34325 * 180.02562 * 3 2 1 5 5 O 1.22087 * 121.06903 * 179.97438 * 4 3 2 6 6 C 1.47102 * 117.86021 * 0.27704 * 4 3 2 7 7 C 1.47288 * 120.88302 * 179.71828 * 6 4 3 8 8 O 1.21626 * 119.99842 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00399 * 179.97438 * 7 6 4 10 10 C 1.46506 * 120.00249 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46934 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47081 * 65.00325 * 11 10 9 13 13 C 1.52995 * 109.46895 * 184.99964 * 11 10 9 14 14 N 1.46494 * 109.47445 * 305.00056 * 11 10 9 15 15 C 1.36936 * 120.00400 * 154.99924 * 14 11 10 16 16 H 1.08001 * 119.99990 * 0.02562 * 15 14 11 17 17 C 1.38815 * 120.00303 * 179.97438 * 15 14 11 18 18 N 1.31620 * 119.99844 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99928 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47243 * 89.99752 * 19 17 15 21 21 H 1.48502 * 109.46839 * 209.99772 * 19 17 15 22 22 H 1.48496 * 109.47059 * 329.99764 * 19 17 15 23 23 C 1.37991 * 118.23577 * 359.45000 * 6 4 3 24 24 N 1.34346 * 120.37285 * 0.56018 * 23 6 4 25 25 C 1.46493 * 118.80393 * 179.68391 * 24 23 6 26 26 H 1.08997 * 109.47652 * 95.91952 * 1 2 3 27 27 H 1.08999 * 109.47228 * 215.92693 * 1 2 3 28 28 H 1.09005 * 109.46896 * 335.92033 * 1 2 3 29 29 H 1.08002 * 120.32530 * 0.04932 * 3 2 1 30 30 H 0.97005 * 119.99994 * 0.02562 * 9 7 6 31 31 H 1.08997 * 109.46906 * 300.00366 * 10 9 7 32 32 H 1.08998 * 109.46881 * 60.00637 * 10 9 7 33 33 H 1.09000 * 109.47419 * 299.99930 * 13 11 10 34 34 H 1.08997 * 109.47496 * 60.00276 * 13 11 10 35 35 H 1.09000 * 109.47627 * 179.97438 * 13 11 10 36 36 H 0.97000 * 120.00059 * 335.00318 * 14 11 10 37 37 H 0.96996 * 119.99765 * 179.97438 * 18 17 15 38 38 H 1.08000 * 119.81532 * 180.24667 * 23 6 4 39 39 H 1.09007 * 109.46903 * 264.04928 * 25 24 23 40 40 H 1.08992 * 109.47802 * 24.05219 * 25 24 23 41 41 H 1.09002 * 109.47110 * 144.05927 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2326 -0.0010 6 6 4.2724 -0.1134 -0.0074 7 6 5.7436 -0.1849 -0.0146 8 8 6.4021 0.8377 -0.0144 9 7 6.3600 -1.3833 -0.0203 10 6 7.8233 -1.4544 -0.0268 11 6 8.2626 -2.9200 -0.0331 12 1 7.9469 -3.3900 -0.9645 13 6 9.7860 -2.9962 0.0858 14 7 7.6490 -3.6186 1.0989 15 6 7.4541 -4.9729 1.0436 16 1 7.7533 -5.5261 0.1656 17 6 6.8731 -5.6350 2.1165 18 7 6.6854 -6.9366 2.0631 19 14 6.3563 -4.6783 3.6354 20 1 4.9526 -4.2202 3.4781 21 1 6.4604 -5.5534 4.8307 22 1 7.2452 -3.5009 3.8050 23 6 3.5075 -1.2618 -0.0012 24 7 2.1663 -1.1847 -0.0006 25 6 1.3880 -2.4258 -0.0010 26 1 -0.3634 -0.1060 -1.0221 27 1 -0.3633 -0.8322 0.6030 28 1 -0.3633 0.9383 0.4193 29 1 1.6137 2.1083 0.0008 30 1 5.8348 -2.1989 -0.0200 31 1 8.2072 -0.9566 -0.9172 32 1 8.2150 -0.9612 0.8627 33 1 10.2427 -2.4764 -0.7565 34 1 10.1018 -2.5262 1.0172 35 1 10.0991 -4.0403 0.0818 36 1 7.3805 -3.1219 1.8877 37 1 6.2798 -7.3993 2.8129 38 1 3.9898 -2.2282 -0.0020 39 1 1.1042 -2.6763 -1.0233 40 1 1.9900 -3.2325 0.4170 41 1 0.4903 -2.2919 0.6026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752881330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:49 Heat of formation + Delta-G solvation = -19.399817 kcal Electronic energy + Delta-G solvation = -23661.074159 eV Core-core repulsion = 20156.225138 eV Total energy + Delta-G solvation = -3504.849022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31383 -39.12001 -37.75586 -36.32652 -33.89977 -33.38233 -32.68614 -31.77514 -29.49790 -28.50225 -27.07808 -25.72113 -24.20791 -23.38164 -21.75295 -20.43197 -20.19901 -18.31302 -17.75382 -17.47099 -16.28845 -16.25063 -15.79645 -15.36880 -15.27793 -14.51893 -14.46726 -14.03168 -13.77588 -13.71653 -13.48841 -13.33950 -13.15745 -12.83244 -12.63452 -12.58782 -12.27821 -12.13203 -12.06336 -11.94118 -11.63685 -11.03493 -10.84542 -10.43157 -10.11709 -9.78528 -9.71032 -9.62530 -9.11673 -9.03823 -8.65855 -8.00411 -7.42349 -5.90231 -3.26561 0.79572 1.21659 2.19545 3.17522 3.22312 3.33431 3.35613 3.50807 3.89610 3.95938 4.26971 4.38861 4.45977 4.55237 4.67374 4.89053 4.93518 5.01857 5.06988 5.19672 5.26077 5.34881 5.39434 5.43342 5.58979 5.66523 5.80899 6.02913 6.10570 6.19001 6.32076 6.40355 6.43023 6.64862 6.68691 6.78288 6.98392 7.86808 7.93493 8.20316 8.28710 8.67587 9.07246 9.79644 10.00117 11.27677 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.005178 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.133654 B = 5405.893490 C = 6804.790050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 C -0.273 4.273 4 C 0.409 3.591 5 O -0.484 6.484 6 C -0.299 4.299 7 C 0.569 3.431 8 O -0.522 6.522 9 N -0.724 5.724 10 C 0.115 3.885 11 C 0.165 3.835 12 H 0.062 0.938 13 C -0.163 4.163 14 N -0.749 5.749 15 C -0.244 4.244 16 H 0.092 0.908 17 C 0.008 3.992 18 N -0.932 5.932 19 Si 0.879 3.121 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.276 1.276 23 C 0.176 3.824 24 N -0.470 5.470 25 C 0.045 3.955 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.151 0.849 30 H 0.400 0.600 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.172 0.828 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.081 8.155 -5.670 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.049 3.951 3 C -0.297 4.297 4 C 0.295 3.705 5 O -0.366 6.366 6 C -0.310 4.310 7 C 0.355 3.645 8 O -0.398 6.398 9 N -0.377 5.377 10 C -0.010 4.010 11 C 0.055 3.945 12 H 0.080 0.920 13 C -0.223 4.223 14 N -0.393 5.393 15 C -0.374 4.374 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.579 5.579 19 Si 0.709 3.291 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.202 1.202 23 C 0.046 3.954 24 N -0.156 5.156 25 C -0.096 4.096 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.110 0.890 29 H 0.168 0.832 30 H 0.237 0.763 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.189 0.811 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.394 9.047 -5.744 17.945 hybrid contribution -0.608 -0.185 1.303 1.450 sum -15.002 8.862 -4.441 17.981 Atomic orbital electron populations 1.21183 0.88131 1.05003 1.04075 1.20284 0.94853 0.85063 0.94873 1.22253 0.96348 0.97088 1.14005 1.18137 0.88196 0.87888 0.76288 1.90805 1.69977 1.33231 1.42549 1.22563 0.94548 0.94993 1.18916 1.17492 0.86100 0.83699 0.77167 1.90821 1.65906 1.34096 1.48971 1.45930 1.08074 1.07884 1.75849 1.21709 0.79361 0.98025 1.01883 1.20496 0.92300 0.89208 0.92465 0.91964 1.22322 0.97546 1.02154 1.00314 1.42888 1.74019 1.06062 1.16378 1.19088 1.33599 0.82081 1.02643 0.89036 1.24648 1.01220 0.95303 0.97675 1.69697 1.49454 1.06791 1.31985 0.86644 0.78480 0.79512 0.84429 1.21310 1.21697 1.20201 1.22412 0.82124 1.00383 0.90530 1.42592 1.05375 1.07272 1.60409 1.22609 0.97938 0.84500 1.04548 0.89340 0.90057 0.88967 0.83168 0.76347 0.91343 0.91846 0.93761 0.93275 0.91906 0.80479 0.93015 0.81100 0.89786 0.88243 0.88846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.52 9.34 36.00 0.34 -0.18 16 2 C 0.16 1.33 6.64 -82.13 -0.55 0.79 16 3 C -0.27 -3.29 9.57 -39.47 -0.38 -3.66 16 4 C 0.41 7.06 6.96 -34.68 -0.24 6.82 16 5 O -0.48 -10.64 16.41 -15.17 -0.25 -10.89 16 6 C -0.30 -4.78 6.05 -102.71 -0.62 -5.40 16 7 C 0.57 10.67 7.77 -12.58 -0.10 10.57 16 8 O -0.52 -12.03 15.57 -14.76 -0.23 -12.26 16 9 N -0.72 -12.03 5.34 -61.43 -0.33 -12.36 16 10 C 0.11 1.94 5.23 -4.04 -0.02 1.91 16 11 C 0.16 2.94 3.05 -67.94 -0.21 2.73 16 12 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 13 C -0.16 -2.73 9.49 37.15 0.35 -2.38 16 14 N -0.75 -16.12 4.36 -53.43 -0.23 -16.35 16 15 C -0.24 -6.25 10.41 -15.06 -0.16 -6.41 16 16 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 17 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 18 N -0.93 -27.30 13.97 55.49 0.78 -26.52 16 19 Si 0.88 20.75 27.74 -169.99 -4.71 16.04 16 20 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 23 C 0.18 2.01 9.80 -16.54 -0.16 1.85 16 24 N -0.47 -4.01 2.97 -119.75 -0.36 -4.37 16 25 C 0.05 0.21 9.98 59.84 0.60 0.80 16 26 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.20 6.00 -51.93 -0.31 -0.11 16 28 H 0.09 0.32 7.97 -51.93 -0.41 -0.10 16 29 H 0.15 1.54 8.01 -52.49 -0.42 1.12 16 30 H 0.40 6.08 6.21 -40.82 -0.25 5.83 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.36 7.95 5.66 -40.82 -0.23 7.72 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.17 1.65 6.28 -52.49 -0.33 1.32 16 39 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 40 H 0.10 0.47 7.86 -51.93 -0.41 0.06 16 41 H 0.09 0.24 5.94 -51.93 -0.31 -0.07 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -37.84 342.27 -7.06 -44.91 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -5.65 Total: 9.09 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.24 Total: 7.56 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.14 Total: -59.60 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.48 Total: -23.15 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.71 Total: 16.04 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -37.84 -7.06 -44.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752881330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.507 kcal (2) G-P(sol) polarization free energy of solvation -37.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds