Wall clock time and date at job start Fri Apr 10 2020 17:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34868 * 119.10499 * 2 1 4 4 C 1.41665 * 119.34325 * 180.02562 * 3 2 1 5 5 O 1.22087 * 121.06903 * 179.97438 * 4 3 2 6 6 C 1.47102 * 117.86021 * 0.27704 * 4 3 2 7 7 C 1.47288 * 120.88302 * 179.71828 * 6 4 3 8 8 O 1.21626 * 119.99842 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00399 * 179.97438 * 7 6 4 10 10 C 1.46506 * 120.00249 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46934 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47081 * 65.00325 * 11 10 9 13 13 C 1.52995 * 109.46895 * 184.99964 * 11 10 9 14 14 N 1.46494 * 109.47445 * 305.00056 * 11 10 9 15 15 C 1.36936 * 120.00400 * 154.99924 * 14 11 10 16 16 H 1.08001 * 119.99990 * 0.02562 * 15 14 11 17 17 C 1.38815 * 120.00303 * 179.97438 * 15 14 11 18 18 N 1.31620 * 119.99844 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99928 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47243 * 89.99752 * 19 17 15 21 21 H 1.48502 * 109.46839 * 209.99772 * 19 17 15 22 22 H 1.48496 * 109.47059 * 329.99764 * 19 17 15 23 23 C 1.37991 * 118.23577 * 359.45000 * 6 4 3 24 24 N 1.34346 * 120.37285 * 0.56018 * 23 6 4 25 25 C 1.46493 * 118.80393 * 179.68391 * 24 23 6 26 26 H 1.08997 * 109.47652 * 95.91952 * 1 2 3 27 27 H 1.08999 * 109.47228 * 215.92693 * 1 2 3 28 28 H 1.09005 * 109.46896 * 335.92033 * 1 2 3 29 29 H 1.08002 * 120.32530 * 0.04932 * 3 2 1 30 30 H 0.97005 * 119.99994 * 0.02562 * 9 7 6 31 31 H 1.08997 * 109.46906 * 300.00366 * 10 9 7 32 32 H 1.08998 * 109.46881 * 60.00637 * 10 9 7 33 33 H 1.09000 * 109.47419 * 299.99930 * 13 11 10 34 34 H 1.08997 * 109.47496 * 60.00276 * 13 11 10 35 35 H 1.09000 * 109.47627 * 179.97438 * 13 11 10 36 36 H 0.97000 * 120.00059 * 335.00318 * 14 11 10 37 37 H 0.96996 * 119.99765 * 179.97438 * 18 17 15 38 38 H 1.08000 * 119.81532 * 180.24667 * 23 6 4 39 39 H 1.09007 * 109.46903 * 264.04928 * 25 24 23 40 40 H 1.08992 * 109.47802 * 24.05219 * 25 24 23 41 41 H 1.09002 * 109.47110 * 144.05927 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1784 0.0000 4 6 3.5796 1.1843 -0.0006 5 8 4.2053 2.2326 -0.0010 6 6 4.2724 -0.1134 -0.0074 7 6 5.7436 -0.1849 -0.0146 8 8 6.4021 0.8377 -0.0144 9 7 6.3600 -1.3833 -0.0203 10 6 7.8233 -1.4544 -0.0268 11 6 8.2626 -2.9200 -0.0331 12 1 7.9469 -3.3900 -0.9645 13 6 9.7860 -2.9962 0.0858 14 7 7.6490 -3.6186 1.0989 15 6 7.4541 -4.9729 1.0436 16 1 7.7533 -5.5261 0.1656 17 6 6.8731 -5.6350 2.1165 18 7 6.6854 -6.9366 2.0631 19 14 6.3563 -4.6783 3.6354 20 1 4.9526 -4.2202 3.4781 21 1 6.4604 -5.5534 4.8307 22 1 7.2452 -3.5009 3.8050 23 6 3.5075 -1.2618 -0.0012 24 7 2.1663 -1.1847 -0.0006 25 6 1.3880 -2.4258 -0.0010 26 1 -0.3634 -0.1060 -1.0221 27 1 -0.3633 -0.8322 0.6030 28 1 -0.3633 0.9383 0.4193 29 1 1.6137 2.1083 0.0008 30 1 5.8348 -2.1989 -0.0200 31 1 8.2072 -0.9566 -0.9172 32 1 8.2150 -0.9612 0.8627 33 1 10.2427 -2.4764 -0.7565 34 1 10.1018 -2.5262 1.0172 35 1 10.0991 -4.0403 0.0818 36 1 7.3805 -3.1219 1.8877 37 1 6.2798 -7.3993 2.8129 38 1 3.9898 -2.2282 -0.0020 39 1 1.1042 -2.6763 -1.0233 40 1 1.9900 -3.2325 0.4170 41 1 0.4903 -2.2919 0.6026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752881330.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:35:48 Heat of formation + Delta-G solvation = -47.022531 kcal Electronic energy + Delta-G solvation = -23662.271970 eV Core-core repulsion = 20156.225138 eV Total energy + Delta-G solvation = -3506.046833 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24626 -40.46356 -38.98649 -37.92701 -35.31653 -34.46650 -33.88542 -33.28610 -31.19797 -29.33209 -27.73090 -26.98833 -25.38405 -25.07449 -22.79180 -21.84589 -21.53903 -19.92348 -19.02646 -18.58934 -17.26781 -17.10954 -16.95270 -16.81542 -16.70105 -16.04641 -15.70348 -15.49060 -15.00444 -14.77929 -14.55294 -14.32032 -14.22967 -13.85898 -13.85436 -13.77107 -13.44543 -13.35023 -13.25868 -12.84325 -12.71529 -12.53853 -12.48892 -12.13850 -11.77704 -11.70603 -11.21880 -10.99619 -10.52858 -10.34029 -10.07541 -9.33737 -9.07286 -7.98165 -5.31940 -0.24166 0.30059 1.36319 1.43602 1.44924 1.48744 1.87811 2.19168 2.49487 2.76822 3.20007 3.32698 3.55291 3.57744 3.63879 3.78593 3.92256 4.20038 4.22056 4.33132 4.38840 4.44244 4.61012 4.69303 4.71233 4.72978 4.80857 4.83975 4.84841 5.01395 5.13617 5.23073 5.28029 5.37795 5.57005 5.66551 5.78854 5.83328 6.24824 6.59779 7.06341 7.09669 7.30600 7.84451 8.04577 9.22788 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.005178 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.133654 B = 5405.893490 C = 6804.790050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.185 3.815 3 C -0.302 4.302 4 C 0.386 3.614 5 O -0.564 6.564 6 C -0.350 4.350 7 C 0.566 3.434 8 O -0.578 6.578 9 N -0.714 5.714 10 C 0.122 3.878 11 C 0.167 3.833 12 H 0.068 0.932 13 C -0.158 4.158 14 N -0.749 5.749 15 C -0.221 4.221 16 H 0.066 0.934 17 C -0.049 4.049 18 N -0.978 5.978 19 Si 0.938 3.062 20 H -0.264 1.264 21 H -0.304 1.304 22 H -0.272 1.272 23 C 0.214 3.786 24 N -0.456 5.456 25 C 0.031 3.969 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.161 0.839 30 H 0.408 0.592 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.362 0.638 37 H 0.257 0.743 38 H 0.195 0.805 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.226 7.108 -5.763 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 C -0.325 4.325 4 C 0.279 3.721 5 O -0.453 6.453 6 C -0.361 4.361 7 C 0.355 3.645 8 O -0.458 6.458 9 N -0.367 5.367 10 C -0.003 4.003 11 C 0.059 3.941 12 H 0.086 0.914 13 C -0.218 4.218 14 N -0.393 5.393 15 C -0.352 4.352 16 H 0.084 0.916 17 C -0.241 4.241 18 N -0.629 5.629 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.231 1.231 22 H -0.197 1.197 23 C 0.079 3.921 24 N -0.139 5.139 25 C -0.108 4.108 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.120 0.880 29 H 0.178 0.822 30 H 0.246 0.754 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.195 0.805 37 H 0.066 0.934 38 H 0.211 0.789 39 H 0.129 0.871 40 H 0.121 0.879 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.596 7.969 -5.865 20.187 hybrid contribution 0.259 -0.045 1.233 1.261 sum -17.337 7.924 -4.632 19.617 Atomic orbital electron populations 1.21411 0.83704 1.06857 1.06188 1.20928 0.97204 0.83740 0.90341 1.22160 0.93930 0.99400 1.16975 1.18878 0.90367 0.87519 0.75309 1.90751 1.71666 1.35276 1.47585 1.22276 0.93413 0.96276 1.24115 1.17949 0.87368 0.83195 0.75966 1.90778 1.67321 1.35887 1.51837 1.45819 1.07959 1.07699 1.75233 1.21613 0.79686 0.97042 1.01954 1.20619 0.92886 0.89281 0.91301 0.91414 1.22229 0.96478 1.01447 1.01646 1.42866 1.74321 1.04689 1.17409 1.19004 1.31429 0.83481 1.01275 0.91597 1.25244 1.02360 0.95947 1.00571 1.69850 1.51541 1.08610 1.32897 0.85682 0.79312 0.77948 0.80360 1.18952 1.23145 1.19743 1.22585 0.83322 0.99545 0.86676 1.43171 1.04777 1.09193 1.56732 1.23114 0.98445 0.82174 1.07073 0.86890 0.87218 0.87995 0.82176 0.75398 0.90292 0.92887 0.90758 0.93427 0.93556 0.80468 0.93407 0.78880 0.87146 0.87854 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.31 9.34 71.23 0.67 0.36 16 2 C 0.19 2.51 6.64 41.20 0.27 2.79 16 3 C -0.30 -7.10 9.57 22.34 0.21 -6.89 16 4 C 0.39 14.07 6.96 25.44 0.18 14.24 16 5 O -0.56 -27.13 16.41 13.54 0.22 -26.91 16 6 C -0.35 -11.32 6.05 -18.63 -0.11 -11.44 16 7 C 0.57 21.91 7.77 86.62 0.67 22.59 16 8 O -0.58 -28.31 15.57 15.02 0.23 -28.07 16 9 N -0.71 -23.39 5.34 -466.50 -2.49 -25.88 16 10 C 0.12 4.03 5.23 86.38 0.45 4.48 16 11 C 0.17 5.75 3.05 44.99 0.14 5.89 16 12 H 0.07 2.30 8.08 -2.38 -0.02 2.28 16 13 C -0.16 -5.07 9.49 71.98 0.68 -4.38 16 14 N -0.75 -31.20 4.36 -322.95 -1.41 -32.61 16 15 C -0.22 -11.16 10.41 84.03 0.87 -10.29 16 16 H 0.07 3.65 8.06 -2.91 -0.02 3.62 16 17 C -0.05 -2.62 5.50 84.86 0.47 -2.15 16 18 N -0.98 -57.47 13.97 21.65 0.30 -57.17 16 19 Si 0.94 41.94 27.74 68.60 1.90 43.84 16 20 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 21 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.27 -11.82 6.52 99.48 0.65 -11.17 16 23 C 0.21 4.34 9.80 84.25 0.83 5.16 16 24 N -0.46 -5.84 2.97 -532.78 -1.58 -7.42 16 25 C 0.03 0.09 9.98 127.77 1.28 1.37 16 26 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.11 -0.25 6.00 -2.39 -0.01 -0.27 16 28 H 0.10 0.20 7.97 -2.38 -0.02 0.18 16 29 H 0.16 3.28 8.01 -2.91 -0.02 3.26 16 30 H 0.41 11.76 6.21 -92.70 -0.58 11.18 16 31 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 32 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.36 15.26 5.66 -92.71 -0.52 14.74 16 37 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 38 H 0.19 3.04 6.28 -2.91 -0.02 3.02 16 39 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 40 H 0.10 0.38 7.86 -2.39 -0.02 0.36 16 41 H 0.12 -0.28 5.94 -2.39 -0.01 -0.30 16 Total: -1.00 -89.96 342.27 3.69 -86.27 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.10 Total: 26.23 kcal Atomic # 6 Polarization: 15.12 SS G_CDS: 6.60 Total: 21.72 kcal Atomic # 7 Polarization: -117.91 SS G_CDS: -5.18 Total: -123.09 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: 0.46 Total: -54.98 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.90 Total: 43.84 kcal Total: -89.96 3.69 -86.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752881330.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.246 kcal (2) G-P(sol) polarization free energy of solvation -89.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds