Wall clock time and date at job start Fri Apr 10 2020 17:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47063 * 2 1 4 4 C 1.38611 * 119.54611 * 125.02305 * 3 2 1 5 5 C 1.38581 * 119.34640 * 179.97438 * 4 3 2 6 6 C 1.38631 * 118.49375 * 359.75080 * 5 4 3 7 7 C 1.39270 * 119.05655 * 0.46966 * 6 5 4 8 8 C 1.48171 * 119.71925 * 179.79699 * 7 6 5 9 9 O 1.21512 * 120.00026 * 359.72498 * 8 7 6 10 10 N 1.34784 * 119.99714 * 179.72571 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47001 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.47766 * 59.99412 * 12 11 10 14 14 O 1.42903 * 109.46998 * 299.99996 * 12 11 10 15 15 C 1.52997 * 109.47535 * 180.02562 * 12 11 10 16 16 N 1.46492 * 109.47518 * 184.99810 * 15 12 11 17 17 C 1.36936 * 120.00195 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00142 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00021 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00260 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47148 * 89.99838 * 21 19 17 23 23 H 1.48501 * 109.47419 * 210.00097 * 21 19 17 24 24 H 1.48508 * 109.47102 * 330.00155 * 21 19 17 25 25 N 1.31490 * 119.55308 * 304.99830 * 3 2 1 26 26 H 1.09005 * 109.47084 * 300.00113 * 1 2 3 27 27 H 1.09004 * 109.46975 * 59.99697 * 1 2 3 28 28 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46822 * 240.00409 * 2 1 3 30 30 H 1.08996 * 109.47116 * 119.99984 * 2 1 3 31 31 H 1.07994 * 120.32657 * 359.97438 * 4 3 2 32 32 H 1.08009 * 120.75108 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.47432 * 180.27166 * 6 5 4 34 34 H 0.96995 * 120.00015 * 359.72530 * 10 8 7 35 35 H 1.09005 * 109.47306 * 299.99972 * 11 10 8 36 36 H 1.09002 * 109.47518 * 60.00210 * 11 10 8 37 37 H 0.96709 * 113.99921 * 299.99966 * 14 12 11 38 38 H 1.09002 * 109.46798 * 304.99621 * 15 12 11 39 39 H 1.08998 * 109.47296 * 64.99355 * 15 12 11 40 40 H 0.96997 * 119.99957 * 359.97438 * 16 15 12 41 41 H 0.96996 * 120.00200 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9126 1.8346 0.9875 5 6 3.3724 3.1419 0.9832 6 6 2.9354 3.9934 -0.0197 7 6 2.0467 3.5107 -0.9772 8 6 1.5667 4.4093 -2.0531 9 8 1.9445 5.5634 -2.0945 10 7 0.7108 3.9464 -2.9859 11 6 0.2358 4.8350 -4.0493 12 6 -0.7177 4.0675 -4.9673 13 1 -1.5678 3.7068 -4.3884 14 8 -0.0301 2.9566 -5.5464 15 6 -1.2133 4.9953 -6.0783 16 7 -2.2163 4.2973 -6.8863 17 6 -2.8059 4.9338 -7.9457 18 1 -2.5318 5.9505 -8.1854 19 6 -3.7559 4.2721 -8.7117 20 7 -4.0904 3.0331 -8.4194 21 14 -4.5607 5.1406 -10.1565 22 1 -3.7632 4.8994 -11.3857 23 1 -5.9359 4.6137 -10.3473 24 1 -4.6227 6.5993 -9.8851 25 7 1.6300 2.2510 -0.9370 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2370 1.1450 1.7527 32 1 4.0584 3.4885 1.7420 33 1 3.2768 5.0173 -0.0562 34 1 0.4123 3.0241 -2.9551 35 1 -0.2890 5.6822 -3.6075 36 1 1.0860 5.1960 -4.6280 37 1 0.7397 3.2037 -6.0770 38 1 -1.6592 5.8861 -5.6358 39 1 -0.3744 5.2849 -6.7111 40 1 -2.4628 3.3842 -6.6708 41 1 -4.7544 2.5709 -8.9544 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753913797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:02 Heat of formation + Delta-G solvation = -49.989197 kcal Electronic energy + Delta-G solvation = -22556.520251 eV Core-core repulsion = 19050.344774 eV Total energy + Delta-G solvation = -3506.175477 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93371 -39.28793 -37.57391 -34.57703 -34.40507 -33.99824 -32.82915 -31.27870 -30.32365 -29.05880 -25.97239 -24.93382 -24.20057 -22.55715 -21.65705 -21.39863 -20.59822 -18.29962 -17.14219 -16.89387 -16.53494 -16.01036 -15.89806 -15.46888 -15.17301 -14.81474 -14.45589 -14.40529 -14.09235 -13.73924 -13.61514 -13.42232 -12.97475 -12.69909 -12.58432 -12.34758 -12.23533 -11.83191 -11.75280 -11.39328 -10.95552 -10.80977 -10.62675 -10.43453 -10.27469 -10.16869 -9.84895 -9.76429 -9.46684 -9.37098 -9.05455 -8.89149 -6.92811 -5.74987 -3.04686 0.36379 0.86552 2.57201 2.98609 3.44629 3.49487 3.51400 3.58904 3.75226 4.23767 4.47179 4.57016 4.61451 4.71278 4.76163 4.89146 4.92922 5.04129 5.06858 5.13525 5.26160 5.46214 5.56793 5.59482 5.64155 5.65433 5.72221 5.80691 5.83598 5.96920 6.04436 6.20715 6.25013 6.38895 6.52473 6.69094 7.31664 7.60929 7.69522 7.96287 8.11215 8.43103 9.54693 10.11388 10.47148 11.47394 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025179 B = 0.002731 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.785142 B =10250.359729 C =11178.561145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C 0.131 3.869 4 C -0.151 4.151 5 C -0.079 4.079 6 C -0.120 4.120 7 C 0.087 3.913 8 C 0.567 3.433 9 O -0.538 6.538 10 N -0.698 5.698 11 C 0.087 3.913 12 C 0.089 3.911 13 H 0.106 0.894 14 O -0.551 6.551 15 C 0.128 3.872 16 N -0.726 5.726 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 N -0.453 5.453 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.416 0.584 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.373 0.627 38 H 0.029 0.971 39 H 0.023 0.977 40 H 0.389 0.611 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.739 -4.472 21.834 27.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.010 4.010 4 C -0.171 4.171 5 C -0.105 4.105 6 C -0.141 4.141 7 C -0.051 4.051 8 C 0.352 3.648 9 O -0.415 6.415 10 N -0.349 5.349 11 C -0.037 4.037 12 C 0.029 3.971 13 H 0.123 0.877 14 O -0.356 6.356 15 C -0.001 4.001 16 N -0.371 5.371 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 N -0.165 5.165 26 H 0.070 0.930 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.220 0.780 38 H 0.047 0.953 39 H 0.041 0.959 40 H 0.223 0.777 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.870 -4.111 21.298 26.299 hybrid contribution 0.368 0.436 -0.323 0.656 sum 15.239 -3.675 20.975 26.186 Atomic orbital electron populations 1.21699 0.93724 1.02103 1.02892 1.20522 0.97385 0.89827 1.03351 1.21350 0.93251 0.96228 0.90152 1.22221 0.98157 0.96954 0.99803 1.21620 0.98124 0.93206 0.97578 1.22122 0.96300 1.01874 0.93775 1.21158 0.96740 0.91083 0.96157 1.17887 0.79282 0.86348 0.81321 1.90785 1.58104 1.17477 1.75183 1.45774 1.45762 1.16299 1.27094 1.22188 0.98822 0.93620 0.89094 1.22401 0.93548 0.87741 0.93375 0.87652 1.86597 1.46302 1.32906 1.69778 1.21198 0.93160 0.94198 0.91566 1.42240 1.45630 1.15516 1.33691 1.19219 1.16488 0.96931 1.04810 0.91205 1.24765 0.99996 0.96349 0.99786 1.69677 1.35706 1.10875 1.41555 0.86177 0.78662 0.78597 0.82656 1.21690 1.21734 1.20753 1.67336 1.22928 1.02565 1.23670 0.92969 0.91195 0.92068 0.89609 0.90263 0.84310 0.84037 0.83439 0.74676 0.90162 0.90814 0.78045 0.95339 0.95882 0.77696 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.77 37.16 0.36 -0.76 16 2 C -0.07 -0.50 6.33 -27.88 -0.18 -0.68 16 3 C 0.13 1.18 6.18 -82.60 -0.51 0.67 16 4 C -0.15 -1.07 9.72 -39.32 -0.38 -1.45 16 5 C -0.08 -0.58 10.17 -39.31 -0.40 -0.98 16 6 C -0.12 -1.19 9.63 -39.05 -0.38 -1.57 16 7 C 0.09 1.06 6.75 -83.01 -0.56 0.50 16 8 C 0.57 8.04 7.81 -12.18 -0.10 7.95 16 9 O -0.54 -8.93 16.32 5.36 0.09 -8.85 16 10 N -0.70 -9.37 5.44 -61.14 -0.33 -9.70 16 11 C 0.09 1.20 5.34 -4.04 -0.02 1.18 16 12 C 0.09 1.42 3.09 -26.73 -0.08 1.34 16 13 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 14 O -0.55 -9.02 13.02 -35.23 -0.46 -9.48 16 15 C 0.13 2.50 5.90 -4.05 -0.02 2.48 16 16 N -0.73 -18.60 5.55 -59.91 -0.33 -18.93 16 17 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 21 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 N -0.45 -5.17 9.05 -6.06 -0.05 -5.23 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.66 7.94 -51.93 -0.41 0.25 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.36 7.87 -51.93 -0.41 -0.05 16 31 H 0.14 0.56 7.95 -52.49 -0.42 0.15 16 32 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 33 H 0.15 1.39 7.64 -52.49 -0.40 0.99 16 34 H 0.42 5.44 7.67 -40.82 -0.31 5.13 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.37 5.07 9.05 45.56 0.41 5.48 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.39 10.65 7.67 -40.82 -0.31 10.34 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -34.17 354.61 -7.76 -41.93 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -5.20 Total: 14.01 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -2.51 Total: 1.16 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: 0.00 Total: -61.70 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.37 Total: -18.33 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.17 -7.76 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753913797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.061 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds