Wall clock time and date at job start Fri Apr 10 2020 17:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.47063 * 2 1 4 4 C 1.38611 * 119.54611 * 125.02305 * 3 2 1 5 5 C 1.38581 * 119.34640 * 179.97438 * 4 3 2 6 6 C 1.38631 * 118.49375 * 359.75080 * 5 4 3 7 7 C 1.39270 * 119.05655 * 0.46966 * 6 5 4 8 8 C 1.48171 * 119.71925 * 179.79699 * 7 6 5 9 9 O 1.21512 * 120.00026 * 359.72498 * 8 7 6 10 10 N 1.34784 * 119.99714 * 179.72571 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47001 * 180.02562 * 11 10 8 13 13 H 1.08996 * 109.47766 * 59.99412 * 12 11 10 14 14 O 1.42903 * 109.46998 * 299.99996 * 12 11 10 15 15 C 1.52997 * 109.47535 * 180.02562 * 12 11 10 16 16 N 1.46492 * 109.47518 * 184.99810 * 15 12 11 17 17 C 1.36936 * 120.00195 * 179.97438 * 16 15 12 18 18 H 1.07999 * 120.00142 * 359.97438 * 17 16 15 19 19 C 1.38816 * 120.00021 * 179.97438 * 17 16 15 20 20 N 1.31620 * 120.00260 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00022 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47148 * 89.99838 * 21 19 17 23 23 H 1.48501 * 109.47419 * 210.00097 * 21 19 17 24 24 H 1.48508 * 109.47102 * 330.00155 * 21 19 17 25 25 N 1.31490 * 119.55308 * 304.99830 * 3 2 1 26 26 H 1.09005 * 109.47084 * 300.00113 * 1 2 3 27 27 H 1.09004 * 109.46975 * 59.99697 * 1 2 3 28 28 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.46822 * 240.00409 * 2 1 3 30 30 H 1.08996 * 109.47116 * 119.99984 * 2 1 3 31 31 H 1.07994 * 120.32657 * 359.97438 * 4 3 2 32 32 H 1.08009 * 120.75108 * 179.97438 * 5 4 3 33 33 H 1.08000 * 120.47432 * 180.27166 * 6 5 4 34 34 H 0.96995 * 120.00015 * 359.72530 * 10 8 7 35 35 H 1.09005 * 109.47306 * 299.99972 * 11 10 8 36 36 H 1.09002 * 109.47518 * 60.00210 * 11 10 8 37 37 H 0.96709 * 113.99921 * 299.99966 * 14 12 11 38 38 H 1.09002 * 109.46798 * 304.99621 * 15 12 11 39 39 H 1.08998 * 109.47296 * 64.99355 * 15 12 11 40 40 H 0.96997 * 119.99957 * 359.97438 * 16 15 12 41 41 H 0.96996 * 120.00200 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9126 1.8346 0.9875 5 6 3.3724 3.1419 0.9832 6 6 2.9354 3.9934 -0.0197 7 6 2.0467 3.5107 -0.9772 8 6 1.5667 4.4093 -2.0531 9 8 1.9445 5.5634 -2.0945 10 7 0.7108 3.9464 -2.9859 11 6 0.2358 4.8350 -4.0493 12 6 -0.7177 4.0675 -4.9673 13 1 -1.5678 3.7068 -4.3884 14 8 -0.0301 2.9566 -5.5464 15 6 -1.2133 4.9953 -6.0783 16 7 -2.2163 4.2973 -6.8863 17 6 -2.8059 4.9338 -7.9457 18 1 -2.5318 5.9505 -8.1854 19 6 -3.7559 4.2721 -8.7117 20 7 -4.0904 3.0331 -8.4194 21 14 -4.5607 5.1406 -10.1565 22 1 -3.7632 4.8994 -11.3857 23 1 -5.9359 4.6137 -10.3473 24 1 -4.6227 6.5993 -9.8851 25 7 1.6300 2.2510 -0.9370 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.2370 1.1450 1.7527 32 1 4.0584 3.4885 1.7420 33 1 3.2768 5.0173 -0.0562 34 1 0.4123 3.0241 -2.9551 35 1 -0.2890 5.6822 -3.6075 36 1 1.0860 5.1960 -4.6280 37 1 0.7397 3.2037 -6.0770 38 1 -1.6592 5.8861 -5.6358 39 1 -0.3744 5.2849 -6.7111 40 1 -2.4628 3.3842 -6.6708 41 1 -4.7544 2.5709 -8.9544 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753913797.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:01 Heat of formation + Delta-G solvation = -77.127872 kcal Electronic energy + Delta-G solvation = -22557.697072 eV Core-core repulsion = 19050.344774 eV Total energy + Delta-G solvation = -3507.352298 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73540 -40.30581 -38.92896 -36.12267 -35.42682 -35.13328 -33.57496 -33.16742 -31.10458 -30.48100 -27.42626 -25.83576 -25.22597 -24.12637 -22.80801 -22.30573 -21.64086 -19.42639 -19.04903 -17.94428 -17.37709 -17.25627 -16.77630 -16.49828 -16.45656 -16.18345 -15.73243 -15.41937 -15.18009 -14.93590 -14.76438 -14.50001 -14.24921 -14.06719 -13.83383 -13.31226 -13.21336 -12.97187 -12.86942 -12.75679 -12.38565 -12.16806 -12.00622 -11.96039 -11.82767 -11.50783 -11.02998 -10.96447 -10.92215 -10.48803 -10.29626 -9.95804 -9.02556 -7.95425 -5.25431 -0.38235 0.23003 1.47182 1.49339 1.57787 1.64066 1.95405 2.55452 2.81009 2.98763 3.35262 3.45406 3.54880 3.63304 3.82653 3.98017 4.01695 4.09197 4.17653 4.36056 4.38385 4.43160 4.49093 4.55765 4.58094 4.65693 4.88087 4.91595 5.04707 5.08846 5.13026 5.17818 5.22300 5.27676 5.43409 5.47433 5.64160 6.25353 6.32355 6.75084 6.80547 7.05181 7.32373 8.07086 8.30510 9.27931 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025179 B = 0.002731 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.785142 B =10250.359729 C =11178.561145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C 0.114 3.886 4 C -0.136 4.136 5 C -0.073 4.073 6 C -0.127 4.127 7 C 0.056 3.944 8 C 0.565 3.435 9 O -0.570 6.570 10 N -0.695 5.695 11 C 0.099 3.901 12 C 0.108 3.892 13 H 0.097 0.903 14 O -0.563 6.563 15 C 0.124 3.876 16 N -0.741 5.741 17 C -0.249 4.249 18 H 0.077 0.923 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.976 3.024 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.269 1.269 25 N -0.475 5.475 26 H 0.051 0.949 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.179 0.821 32 H 0.179 0.821 33 H 0.146 0.854 34 H 0.417 0.583 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.385 0.615 38 H 0.036 0.964 39 H 0.033 0.967 40 H 0.376 0.624 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.208 -4.689 23.511 29.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.027 4.027 4 C -0.156 4.156 5 C -0.099 4.099 6 C -0.148 4.148 7 C -0.081 4.081 8 C 0.351 3.649 9 O -0.450 6.450 10 N -0.346 5.346 11 C -0.025 4.025 12 C 0.048 3.952 13 H 0.115 0.885 14 O -0.369 6.369 15 C -0.003 4.003 16 N -0.384 5.384 17 C -0.381 4.381 18 H 0.095 0.905 19 C -0.269 4.269 20 N -0.619 5.619 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.221 1.221 24 H -0.193 1.193 25 N -0.187 5.187 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.130 0.870 31 H 0.196 0.804 32 H 0.196 0.804 33 H 0.164 0.836 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.234 0.766 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.208 0.792 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 16.373 -4.298 22.983 28.544 hybrid contribution -0.006 0.462 -0.734 0.867 sum 16.367 -3.836 22.249 27.886 Atomic orbital electron populations 1.21677 0.94693 1.02443 1.01553 1.20608 0.96483 0.88911 1.04795 1.21856 0.93832 0.96755 0.90281 1.22676 0.96141 0.97398 0.99339 1.22045 0.97846 0.92833 0.97131 1.22267 0.95985 1.02392 0.94147 1.20928 0.98893 0.91522 0.96801 1.18283 0.78671 0.86336 0.81579 1.90749 1.59303 1.18827 1.76114 1.45720 1.45700 1.16209 1.26938 1.21973 0.98442 0.93205 0.88926 1.22088 0.93765 0.86986 0.92332 0.88501 1.86574 1.46970 1.33242 1.70146 1.21391 0.92121 0.94690 0.92117 1.42432 1.46789 1.15214 1.33943 1.19652 1.16048 0.97249 1.05109 0.90475 1.25628 1.01192 0.97195 1.02863 1.69840 1.36632 1.12490 1.42938 0.85102 0.77155 0.78041 0.79207 1.21313 1.22132 1.19337 1.67255 1.23776 1.02583 1.25124 0.93026 0.93803 0.90874 0.89880 0.87023 0.80394 0.80395 0.83646 0.74510 0.90086 0.90241 0.76625 0.94660 0.94864 0.79179 0.93957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.77 71.98 0.70 -1.42 16 2 C -0.07 -0.82 6.33 29.85 0.19 -0.64 16 3 C 0.11 1.85 6.18 42.70 0.26 2.11 16 4 C -0.14 -1.44 9.72 22.44 0.22 -1.22 16 5 C -0.07 -0.84 10.17 22.45 0.23 -0.61 16 6 C -0.13 -2.40 9.63 22.61 0.22 -2.19 16 7 C 0.06 1.36 6.75 41.90 0.28 1.64 16 8 C 0.57 16.40 7.81 86.88 0.68 17.08 16 9 O -0.57 -19.35 16.32 -3.75 -0.06 -19.42 16 10 N -0.70 -19.02 5.44 -465.65 -2.53 -21.55 16 11 C 0.10 2.73 5.34 86.38 0.46 3.19 16 12 C 0.11 3.45 3.09 30.59 0.09 3.55 16 13 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 14 O -0.56 -18.46 13.02 -148.98 -1.94 -20.40 16 15 C 0.12 4.85 5.90 86.38 0.51 5.35 16 16 N -0.74 -38.27 5.55 -343.47 -1.91 -40.18 16 17 C -0.25 -14.11 9.99 84.03 0.84 -13.27 16 18 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 20 N -0.97 -60.52 13.06 21.65 0.28 -60.24 16 21 Si 0.98 46.68 29.55 68.60 2.03 48.70 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 N -0.47 -10.74 9.05 -173.07 -1.57 -12.31 16 26 H 0.05 0.73 8.14 -2.38 -0.02 0.72 16 27 H 0.04 0.85 7.94 -2.39 -0.02 0.84 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 0.58 7.87 -2.39 -0.02 0.56 16 31 H 0.18 0.46 7.95 -2.91 -0.02 0.44 16 32 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 33 H 0.15 2.71 7.64 -2.91 -0.02 2.69 16 34 H 0.42 11.25 7.67 -92.71 -0.71 10.54 16 35 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.38 10.34 9.05 -74.05 -0.67 9.67 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.38 21.07 7.67 -92.71 -0.71 20.36 16 41 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -74.71 354.61 -1.57 -76.28 By element: Atomic # 1 Polarization: 40.53 SS G_CDS: -1.03 Total: 39.51 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.15 Total: 9.60 kcal Atomic # 7 Polarization: -128.55 SS G_CDS: -5.72 Total: -134.27 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -2.00 Total: -39.82 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.70 kcal Total: -74.71 -1.57 -76.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753913797.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.845 kcal (2) G-P(sol) polarization free energy of solvation -74.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds