Wall clock time and date at job start Fri Apr 10 2020 17:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47493 * 2 1 4 4 C 1.38603 * 119.54608 * 125.02047 * 3 2 1 5 5 C 1.38581 * 119.34596 * 179.97438 * 4 3 2 6 6 C 1.38639 * 118.49329 * 359.72948 * 5 4 3 7 7 C 1.39267 * 119.05523 * 0.53313 * 6 5 4 8 8 C 1.48165 * 119.71851 * 179.73554 * 7 6 5 9 9 O 1.21512 * 120.00489 * 359.72377 * 8 7 6 10 10 N 1.34782 * 119.99787 * 179.72610 * 8 7 6 11 11 C 1.46505 * 120.00001 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47119 * 179.97438 * 11 10 8 13 13 H 1.09001 * 109.46922 * 305.00299 * 12 11 10 14 14 O 1.42905 * 109.46921 * 65.00030 * 12 11 10 15 15 C 1.52997 * 109.47232 * 185.00149 * 12 11 10 16 16 N 1.46500 * 109.47473 * 180.02562 * 15 12 11 17 17 C 1.36933 * 120.00568 * 180.02562 * 16 15 12 18 18 H 1.08006 * 119.99519 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00407 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00176 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00265 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46951 * 89.99797 * 21 19 17 23 23 H 1.48500 * 109.47313 * 210.00112 * 21 19 17 24 24 H 1.48501 * 109.46991 * 330.00153 * 21 19 17 25 25 N 1.31490 * 119.54877 * 305.00346 * 3 2 1 26 26 H 1.09007 * 109.46730 * 59.99644 * 1 2 3 27 27 H 1.08991 * 109.47452 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46984 * 300.00292 * 1 2 3 29 29 H 1.09000 * 109.46984 * 239.99708 * 2 1 3 30 30 H 1.08998 * 109.46596 * 120.00561 * 2 1 3 31 31 H 1.07994 * 120.32459 * 359.95516 * 4 3 2 32 32 H 1.08003 * 120.75235 * 180.02562 * 5 4 3 33 33 H 1.07992 * 120.47063 * 180.28620 * 6 5 4 34 34 H 0.97002 * 119.99790 * 359.97438 * 10 8 7 35 35 H 1.09000 * 109.46646 * 60.00028 * 11 10 8 36 36 H 1.08994 * 109.46912 * 300.00271 * 11 10 8 37 37 H 0.96696 * 114.00036 * 60.00010 * 14 12 11 38 38 H 1.09001 * 109.46832 * 300.00199 * 15 12 11 39 39 H 1.09002 * 109.47153 * 60.00008 * 15 12 11 40 40 H 0.97004 * 119.99396 * 359.97438 * 16 15 12 41 41 H 0.97001 * 120.00803 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.9127 1.8345 0.9875 5 6 3.3725 3.1418 0.9832 6 6 2.9360 3.9931 -0.0201 7 6 2.0466 3.5107 -0.9771 8 6 1.5660 4.4095 -2.0525 9 8 1.9439 5.5636 -2.0940 10 7 0.7095 3.9470 -2.9847 11 6 0.2338 4.8359 -4.0477 12 6 -0.7194 4.0683 -4.9659 13 1 -0.2224 3.1724 -5.3383 14 8 -1.8885 3.6949 -4.2339 15 6 -1.1183 4.9577 -6.1451 16 7 -2.0315 4.2229 -7.0241 17 6 -2.5245 4.8208 -8.1530 18 1 -2.2405 5.8343 -8.3953 19 6 -3.3893 4.1244 -8.9860 20 7 -3.7350 2.8892 -8.6911 21 14 -4.0624 4.9403 -10.5258 22 1 -3.1484 4.6759 -11.6659 23 1 -5.4070 4.3886 -10.8309 24 1 -4.1669 6.4050 -10.3044 25 7 1.6300 2.2509 -0.9370 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.2368 1.1449 1.7528 32 1 4.0592 3.4881 1.7415 33 1 3.2776 5.0169 -0.0567 34 1 0.4080 3.0256 -2.9518 35 1 1.0837 5.1968 -4.6269 36 1 -0.2905 5.6829 -3.6055 37 1 -2.3819 4.4438 -3.8722 38 1 -1.6153 5.8535 -5.7727 39 1 -0.2265 5.2424 -6.7035 40 1 -2.2863 3.3125 -6.8066 41 1 -4.3396 2.4026 -9.2730 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753913798.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:04 Heat of formation + Delta-G solvation = -49.905969 kcal Electronic energy + Delta-G solvation = -22558.284692 eV Core-core repulsion = 19052.112825 eV Total energy + Delta-G solvation = -3506.171868 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93502 -39.28625 -37.56823 -34.58146 -34.41005 -33.98254 -32.83228 -31.26595 -30.32314 -29.05995 -25.97281 -24.93265 -24.20041 -22.56365 -21.65669 -21.39535 -20.59127 -18.29754 -17.13579 -16.89744 -16.53353 -16.02664 -15.87355 -15.45527 -15.23104 -14.72944 -14.48839 -14.41248 -14.07626 -13.77640 -13.57012 -13.45050 -12.96957 -12.71369 -12.55739 -12.32828 -12.25307 -11.82879 -11.74847 -11.38846 -10.94548 -10.81238 -10.62619 -10.43367 -10.27583 -10.15854 -9.85452 -9.76224 -9.45827 -9.37249 -9.05704 -8.88956 -6.92460 -5.74645 -3.04417 0.36257 0.86379 2.57082 2.98602 3.44693 3.49558 3.51504 3.58781 3.75064 4.23723 4.47219 4.56752 4.61412 4.71298 4.76156 4.89140 4.93008 5.04240 5.07029 5.13510 5.27276 5.46282 5.56907 5.59519 5.63457 5.65461 5.72239 5.80756 5.83565 5.97179 6.05669 6.21292 6.24982 6.38756 6.52348 6.69546 7.31229 7.60399 7.69626 7.97939 8.10763 8.43502 9.55122 10.11963 10.48004 11.47676 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.025277 B = 0.002730 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.453162 B =10253.528786 C =11187.714749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C 0.131 3.869 4 C -0.151 4.151 5 C -0.079 4.079 6 C -0.120 4.120 7 C 0.087 3.913 8 C 0.567 3.433 9 O -0.538 6.538 10 N -0.698 5.698 11 C 0.087 3.913 12 C 0.089 3.911 13 H 0.105 0.895 14 O -0.551 6.551 15 C 0.127 3.873 16 N -0.726 5.726 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 N -0.453 5.453 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.416 0.584 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.373 0.627 38 H 0.023 0.977 39 H 0.029 0.971 40 H 0.389 0.611 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.231 -3.872 22.941 27.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.010 4.010 4 C -0.171 4.171 5 C -0.105 4.105 6 C -0.141 4.141 7 C -0.051 4.051 8 C 0.352 3.648 9 O -0.415 6.415 10 N -0.349 5.349 11 C -0.037 4.037 12 C 0.030 3.970 13 H 0.123 0.877 14 O -0.355 6.355 15 C -0.002 4.002 16 N -0.371 5.371 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 N -0.165 5.165 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.097 0.903 31 H 0.157 0.843 32 H 0.160 0.840 33 H 0.166 0.834 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.220 0.780 38 H 0.041 0.959 39 H 0.046 0.954 40 H 0.224 0.776 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.047 -3.783 21.921 26.309 hybrid contribution -0.091 0.621 0.008 0.628 sum 13.956 -3.162 21.929 26.185 Atomic orbital electron populations 1.21699 0.93670 1.02097 1.02959 1.20525 0.97417 0.89815 1.03331 1.21348 0.93233 0.96228 0.90170 1.22219 0.98159 0.96953 0.99801 1.21622 0.98126 0.93206 0.97571 1.22122 0.96294 1.01878 0.93771 1.21157 0.96715 0.91091 0.96176 1.17885 0.79286 0.86360 0.81297 1.90785 1.58210 1.17473 1.75071 1.45795 1.45426 1.16373 1.27352 1.22201 0.99021 0.93416 0.89041 1.22384 0.85235 0.98946 0.90485 0.87736 1.86591 1.39423 1.36946 1.72559 1.21193 0.94384 0.93972 0.90637 1.42234 1.53915 1.15817 1.25108 1.19216 1.21683 0.97449 0.99096 0.91222 1.24760 1.00414 0.96362 0.99350 1.69679 1.38846 1.10200 1.39066 0.86181 0.78209 0.78413 0.83310 1.21694 1.21733 1.20763 1.67336 1.22865 1.02579 1.23741 0.91131 0.92085 0.92961 0.89646 0.90267 0.84308 0.84035 0.83438 0.74752 0.90178 0.90788 0.77989 0.95909 0.95353 0.77607 0.93477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.77 37.16 0.36 -0.77 16 2 C -0.07 -0.50 6.33 -27.88 -0.18 -0.68 16 3 C 0.13 1.18 6.18 -82.60 -0.51 0.67 16 4 C -0.15 -1.07 9.72 -39.32 -0.38 -1.45 16 5 C -0.08 -0.58 10.17 -39.31 -0.40 -0.98 16 6 C -0.12 -1.19 9.63 -39.05 -0.38 -1.57 16 7 C 0.09 1.06 6.75 -83.01 -0.56 0.50 16 8 C 0.57 8.04 7.81 -12.18 -0.10 7.95 16 9 O -0.54 -8.93 16.32 5.35 0.09 -8.84 16 10 N -0.70 -9.37 5.49 -61.15 -0.34 -9.70 16 11 C 0.09 1.21 5.31 -4.04 -0.02 1.18 16 12 C 0.09 1.42 3.09 -26.73 -0.08 1.34 16 13 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 14 O -0.55 -9.10 13.03 -35.23 -0.46 -9.56 16 15 C 0.13 2.49 5.92 -4.04 -0.02 2.47 16 16 N -0.73 -18.59 5.49 -59.91 -0.33 -18.92 16 17 C -0.24 -6.90 9.99 -15.07 -0.15 -7.05 16 18 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.57 13.06 55.49 0.72 -27.85 16 21 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 N -0.45 -5.17 9.05 -6.06 -0.05 -5.22 16 26 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.36 7.87 -51.93 -0.41 -0.05 16 31 H 0.14 0.56 7.95 -52.49 -0.42 0.15 16 32 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 33 H 0.15 1.39 7.64 -52.49 -0.40 0.99 16 34 H 0.42 5.41 7.80 -40.82 -0.32 5.09 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.37 5.17 9.05 45.56 0.41 5.59 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.39 10.68 7.54 -40.82 -0.31 10.37 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -34.17 354.61 -7.76 -41.93 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -5.20 Total: 14.07 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -2.51 Total: 1.15 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 0.00 Total: -61.69 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.37 Total: -18.40 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.17 -7.76 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753913798.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.975 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds