Wall clock time and date at job start Fri Apr 10 2020 17:36:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 O 1.21275 * 119.99870 * 239.99982 * 4 2 1 6 6 N 1.34777 * 119.99487 * 60.00428 * 4 2 1 7 7 C 1.46500 * 119.99750 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47364 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.46785 * 60.00155 * 8 7 6 10 10 O 1.42900 * 109.47122 * 300.00373 * 8 7 6 11 11 C 1.53002 * 109.47340 * 179.97438 * 8 7 6 12 12 N 1.46494 * 109.47159 * 185.00526 * 11 8 7 13 13 C 1.36931 * 120.00240 * 180.02562 * 12 11 8 14 14 H 1.08002 * 119.99547 * 0.02562 * 13 12 11 15 15 C 1.38810 * 120.00632 * 179.97438 * 13 12 11 16 16 N 1.31624 * 119.99472 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00504 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46737 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46993 * 120.00323 * 17 15 13 20 20 H 1.48494 * 109.47294 * 240.00531 * 17 15 13 21 21 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 22 22 C 1.38674 * 120.41646 * 239.99831 * 21 2 1 23 23 C 1.38630 * 118.41848 * 179.97438 * 22 21 2 24 24 C 1.38228 * 119.16057 * 0.02562 * 23 22 21 25 25 N 1.31854 * 120.76413 * 359.97438 * 24 23 22 26 26 C 1.31888 * 121.72460 * 359.70401 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.96996 * 120.00263 * 359.97438 * 6 4 2 31 31 H 1.09004 * 109.46923 * 300.00114 * 7 6 4 32 32 H 1.09004 * 109.47042 * 59.99701 * 7 6 4 33 33 H 0.96697 * 113.99983 * 299.99018 * 10 8 7 34 34 H 1.09002 * 109.47125 * 305.00207 * 11 8 7 35 35 H 1.08996 * 109.46735 * 65.00440 * 11 8 7 36 36 H 0.97008 * 120.00233 * 359.97438 * 12 11 8 37 37 H 0.97004 * 119.99780 * 179.97438 * 16 15 13 38 38 H 1.07999 * 120.78850 * 359.97438 * 22 21 2 39 39 H 1.08003 * 120.41905 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.61418 * 179.97438 * 24 23 22 41 41 H 1.08005 * 119.61426 * 180.31006 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1946 -0.9409 -3.6507 8 6 1.6843 -0.2200 -4.9000 9 1 2.0478 0.8077 -4.9004 10 8 0.2553 -0.2198 -4.8995 11 6 2.1943 -0.9412 -6.1492 12 7 1.8065 -0.1848 -7.3424 13 6 2.1550 -0.6410 -8.5855 14 1 2.7155 -1.5586 -8.6864 15 6 1.7872 0.0754 -9.7161 16 7 1.1037 1.1936 -9.5931 17 14 2.2633 -0.5465 -11.4120 18 1 3.0235 -1.8152 -11.2785 19 1 1.0364 -0.7870 -12.2135 20 1 3.1079 0.4679 -12.0921 21 6 2.0324 -0.7105 1.2305 22 6 2.8302 -0.0449 2.1489 23 6 3.2688 -0.7381 3.2665 24 6 2.8994 -2.0605 3.4266 25 7 2.1393 -2.6615 2.5324 26 6 1.6987 -2.0314 1.4608 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.1488 0.5385 -2.5436 31 1 3.2846 -0.9414 -3.6509 32 1 1.8308 -1.9685 -3.6506 33 1 -0.1382 -1.1031 -4.8992 34 1 3.2807 -1.0192 -6.1057 35 1 1.7599 -1.9398 -6.1950 36 1 1.3021 0.6388 -7.2518 37 1 0.8469 1.6944 -10.3832 38 1 3.1033 0.9889 1.9972 39 1 3.8912 -0.2512 4.0026 40 1 3.2373 -2.6077 4.2943 41 1 1.0738 -2.5555 0.7528 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753933949.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:36:10 Heat of formation + Delta-G solvation = -47.835396 kcal Electronic energy + Delta-G solvation = -22594.863047 eV Core-core repulsion = 19088.780966 eV Total energy + Delta-G solvation = -3506.082081 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.87561 -39.55611 -37.69555 -34.89376 -34.45336 -34.03466 -32.39972 -31.35948 -30.19282 -28.90254 -25.82391 -24.93617 -23.80679 -23.04821 -22.08826 -21.46832 -20.08633 -17.69970 -17.40234 -17.17293 -16.72805 -16.23778 -15.96729 -15.69404 -14.90748 -14.82539 -14.49114 -14.18205 -14.07224 -13.74660 -13.62234 -13.33427 -13.10250 -12.96300 -12.76134 -12.59066 -12.34394 -11.95749 -11.78905 -11.67385 -10.99236 -10.85695 -10.66703 -10.20028 -10.16182 -9.94491 -9.82365 -9.66894 -9.53133 -9.20263 -9.16469 -8.93884 -6.97222 -5.79342 -3.09080 0.85109 1.04038 2.48164 3.00369 3.41506 3.47177 3.49451 3.62122 4.05836 4.34146 4.39695 4.51890 4.61088 4.64772 4.68470 4.76697 4.80872 4.86261 4.95242 5.19533 5.23622 5.31069 5.44498 5.52775 5.53777 5.58388 5.70291 5.77538 5.82309 5.90845 5.98608 6.15422 6.32624 6.44281 6.47543 6.63172 7.37873 7.66343 7.76084 7.87839 8.08924 8.38781 9.50579 10.06643 10.42258 11.43061 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.044756 B = 0.002358 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.465055 B =11871.243164 C =12105.852261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.067 4.067 3 H 0.107 0.893 4 C 0.514 3.486 5 O -0.535 6.535 6 N -0.718 5.718 7 C 0.089 3.911 8 C 0.089 3.911 9 H 0.105 0.895 10 O -0.553 6.553 11 C 0.127 3.873 12 N -0.726 5.726 13 C -0.243 4.243 14 H 0.071 0.929 15 C -0.013 4.013 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.118 4.118 22 C -0.069 4.069 23 C -0.176 4.176 24 C 0.095 3.905 25 N -0.486 5.486 26 C 0.134 3.866 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.406 0.594 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.373 0.627 34 H 0.028 0.972 35 H 0.023 0.977 36 H 0.388 0.612 37 H 0.255 0.745 38 H 0.133 0.867 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -0.483 26.280 26.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.089 4.089 3 H 0.125 0.875 4 C 0.299 3.701 5 O -0.412 6.412 6 N -0.370 5.370 7 C -0.035 4.035 8 C 0.029 3.971 9 H 0.123 0.877 10 O -0.358 6.358 11 C -0.002 4.002 12 N -0.371 5.371 13 C -0.374 4.374 14 H 0.089 0.911 15 C -0.209 4.209 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.120 4.120 22 C -0.095 4.095 23 C -0.196 4.196 24 C -0.062 4.062 25 N -0.194 5.194 26 C -0.023 4.023 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.241 0.759 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.220 0.780 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.223 0.777 37 H 0.065 0.935 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.449 -1.542 26.335 26.384 hybrid contribution 0.180 0.677 -1.204 1.392 sum 0.629 -0.865 25.131 25.154 Atomic orbital electron populations 1.21828 0.91467 1.03392 1.03374 1.20231 0.98064 1.00257 0.90382 0.87486 1.20410 0.80422 0.84764 0.84463 1.90743 1.37582 1.26170 1.86686 1.45892 1.53509 1.32368 1.05211 1.22113 1.00267 0.96845 0.84287 1.22396 0.81411 1.00963 0.92291 0.87741 1.86572 1.18622 1.33725 1.96836 1.21200 0.97567 0.94599 0.86810 1.42244 1.66801 1.27815 1.00227 1.19261 1.28983 1.05591 0.83589 0.91146 1.24770 1.00830 0.97390 0.97933 1.69689 1.43216 1.16489 1.28426 0.86103 0.77614 0.77838 0.84533 1.20535 1.21802 1.21809 1.20329 0.99588 0.96019 0.96052 1.21468 0.94646 1.00162 0.93239 1.22090 1.02117 0.96350 0.99055 1.22786 0.93721 0.92307 0.97376 1.67725 1.10470 1.38433 1.02807 1.22518 0.95666 0.90841 0.93300 0.90951 0.91150 0.91640 0.75919 0.90448 0.91010 0.77967 0.95380 0.95895 0.77734 0.93510 0.84866 0.84794 0.82892 0.83198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.90 37.16 0.33 -0.59 16 2 C -0.07 -0.55 2.92 -92.92 -0.27 -0.82 16 3 H 0.11 0.65 7.93 -51.93 -0.41 0.24 16 4 C 0.51 5.88 7.03 -10.98 -0.08 5.80 16 5 O -0.54 -8.31 15.15 5.56 0.08 -8.22 16 6 N -0.72 -7.57 5.34 -60.29 -0.32 -7.89 16 7 C 0.09 1.11 5.34 -4.04 -0.02 1.09 16 8 C 0.09 1.30 3.08 -26.73 -0.08 1.22 16 9 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 10 O -0.55 -8.20 13.03 -35.23 -0.46 -8.66 16 11 C 0.13 2.41 5.90 -4.04 -0.02 2.38 16 12 N -0.73 -18.15 5.55 -59.91 -0.33 -18.48 16 13 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -28.16 13.06 55.49 0.72 -27.44 16 17 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 C -0.12 -1.14 4.40 -104.48 -0.46 -1.60 16 22 C -0.07 -0.57 9.81 -39.28 -0.39 -0.95 16 23 C -0.18 -1.37 10.11 -39.44 -0.40 -1.77 16 24 C 0.09 0.88 11.18 -17.55 -0.20 0.68 16 25 N -0.49 -5.82 10.36 -13.25 -0.14 -5.95 16 26 C 0.13 1.53 9.13 -17.55 -0.16 1.37 16 27 H 0.07 0.41 7.56 -51.93 -0.39 0.02 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.46 7.40 -51.93 -0.38 0.08 16 30 H 0.41 3.60 7.76 -40.82 -0.32 3.28 16 31 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.37 4.58 9.05 45.56 0.41 5.00 16 34 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.39 10.36 7.67 -40.82 -0.31 10.05 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 38 H 0.13 0.76 8.00 -52.49 -0.42 0.34 16 39 H 0.13 0.66 8.06 -52.48 -0.42 0.23 16 40 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.15 1.68 7.53 -52.48 -0.40 1.28 16 LS Contribution 350.67 15.07 5.28 5.28 Total: -1.00 -35.13 350.67 -7.32 -42.45 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -5.15 Total: 12.15 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.99 Total: -0.59 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.07 Total: -59.76 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.37 Total: -16.88 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.13 -7.32 -42.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753933949.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.380 kcal (2) G-P(sol) polarization free energy of solvation -35.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds